Wall clock time and date at job start Tue Mar 31 2020 17:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 110.54855 * 2 1 4 4 C 1.55002 * 110.61474 * 237.12537 * 2 1 3 5 5 C 1.54806 * 102.09156 * 204.47244 * 4 2 1 6 6 H 1.08998 * 110.48869 * 262.20684 * 5 4 2 7 7 N 1.46497 * 110.48773 * 139.55504 * 5 4 2 8 8 C 1.34776 * 120.00190 * 158.78454 * 7 5 4 9 9 O 1.21355 * 119.99679 * 359.97438 * 8 7 5 10 10 C 1.49447 * 120.00419 * 180.02562 * 8 7 5 11 11 O 1.21349 * 119.99858 * 359.97438 * 10 8 7 12 12 N 1.34779 * 120.00162 * 179.97438 * 10 8 7 13 13 C 1.46497 * 119.99933 * 179.97438 * 12 10 8 14 14 C 1.50701 * 109.47227 * 180.02562 * 13 12 10 15 15 C 1.38632 * 119.74921 * 269.73075 * 14 13 12 16 16 C 1.37619 * 120.24450 * 179.72228 * 15 14 13 17 17 C 1.40714 * 119.74616 * 0.51969 * 16 15 14 18 18 C 1.41400 * 120.24410 * 179.72433 * 17 16 15 19 19 H 1.07997 * 119.99393 * 24.40747 * 18 17 16 20 20 C 1.39939 * 120.00132 * 204.40398 * 18 17 16 21 21 N 1.30829 * 119.99987 * 17.85480 * 20 18 17 22 22 Si 1.86802 * 120.00210 * 197.85272 * 20 18 17 23 23 H 1.48504 * 109.46980 * 90.00032 * 22 20 18 24 24 H 1.48500 * 109.47266 * 210.00061 * 22 20 18 25 25 H 1.48505 * 109.46979 * 330.00137 * 22 20 18 26 26 C 1.40714 * 119.51162 * 359.75704 * 17 16 15 27 27 C 1.37618 * 119.74621 * 359.97438 * 26 17 16 28 28 C 1.54106 * 104.18682 * 20.88105 * 5 4 2 29 29 O 1.43740 * 107.42029 * 1.95122 * 28 5 4 30 30 H 1.08999 * 109.47043 * 182.88145 * 1 2 3 31 31 H 1.09003 * 109.46694 * 302.87612 * 1 2 3 32 32 H 1.09000 * 109.47464 * 62.87413 * 1 2 3 33 33 H 1.09000 * 110.90992 * 86.27494 * 4 2 1 34 34 H 1.09003 * 110.90725 * 322.67145 * 4 2 1 35 35 H 0.97004 * 120.00381 * 338.77677 * 7 5 4 36 36 H 0.96998 * 119.99741 * 0.02562 * 12 10 8 37 37 H 1.09004 * 109.47112 * 300.00313 * 13 12 10 38 38 H 1.08996 * 109.47222 * 59.99883 * 13 12 10 39 39 H 1.07998 * 119.87749 * 359.97438 * 15 14 13 40 40 H 1.08001 * 120.12661 * 180.27349 * 16 15 14 41 41 H 0.97003 * 120.00080 * 179.97438 * 21 20 18 42 42 H 1.08002 * 120.12405 * 180.02562 * 26 17 16 43 43 H 1.07996 * 119.87797 * 180.02562 * 27 26 17 44 44 H 1.08995 * 109.88245 * 121.45571 * 28 5 4 45 45 H 1.09000 * 109.87551 * 242.45675 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0757 -0.7875 -1.2184 5 6 3.4794 -1.2156 -0.7256 6 1 4.2406 -0.5315 -1.1007 7 7 3.7724 -2.5891 -1.1424 8 6 5.0491 -3.0160 -1.2071 9 8 5.9561 -2.2623 -0.9204 10 6 5.3480 -4.4170 -1.6328 11 8 4.4411 -5.1704 -1.9199 12 7 6.6248 -4.8437 -1.6980 13 6 6.9178 -6.2172 -2.1148 14 6 8.4084 -6.4387 -2.1030 15 6 9.1507 -6.1838 -3.2457 16 6 10.5133 -6.3771 -3.2446 17 6 11.1510 -6.8456 -2.0811 18 6 12.5496 -7.0535 -2.0700 19 1 13.1812 -6.5132 -2.7597 20 6 13.1153 -7.9591 -1.1655 21 7 12.3636 -8.8575 -0.5829 22 14 14.9437 -7.8853 -0.7900 23 1 15.1766 -6.9742 0.3594 24 1 15.4348 -9.2451 -0.4512 25 1 15.6733 -7.3776 -1.9797 26 6 10.3866 -7.1064 -0.9288 27 6 9.0261 -6.9007 -0.9510 28 6 3.3839 -1.1267 0.8099 29 8 2.0397 -0.7353 1.1356 30 1 -0.3633 -1.0264 0.0517 31 1 -0.3633 0.5579 0.8631 32 1 -0.3634 0.4685 -0.9146 33 1 2.1508 -0.1444 -2.0953 34 1 1.4549 -1.6584 -1.4285 35 1 3.0474 -3.1915 -1.3718 36 1 7.3497 -4.2415 -1.4681 37 1 6.4416 -6.9152 -1.4261 38 1 6.5337 -6.3811 -3.1215 39 1 8.6585 -5.8284 -4.1389 40 1 11.0903 -6.1738 -4.1346 41 1 12.7558 -9.4855 0.0438 42 1 10.8659 -7.4659 -0.0303 43 1 8.4374 -7.0998 -0.0678 44 1 3.6045 -2.0982 1.2519 45 1 4.0873 -0.3819 1.1825 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349274094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:30 Heat of formation + Delta-G solvation = -124.074782 kcal Electronic energy + Delta-G solvation = -26945.863589 eV Core-core repulsion = 22926.766958 eV Total energy + Delta-G solvation = -4019.096631 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -41.89349 -40.64480 -39.68284 -39.19589 -36.64478 -35.87362 -35.04205 -33.10311 -32.16202 -31.25324 -31.18219 -28.92545 -27.07237 -26.39701 -24.76179 -22.92611 -22.46171 -22.30226 -21.86662 -21.30530 -19.74025 -19.25455 -18.19977 -17.70897 -17.28185 -17.04520 -16.89572 -16.62731 -16.46894 -15.90754 -15.73658 -15.61156 -15.15280 -14.98211 -14.70291 -14.37654 -14.26734 -13.84776 -13.62360 -13.48182 -13.42920 -13.33544 -13.00895 -12.88626 -12.82192 -12.77229 -12.61113 -12.40352 -12.22702 -12.16685 -11.86354 -11.51487 -11.31100 -11.07012 -10.87127 -10.78614 -10.32921 -10.22345 -9.41477 -9.30959 -8.68634 -6.38776 0.28529 0.75685 1.12529 1.30564 1.38390 1.51024 1.54463 2.08228 2.18828 2.53367 2.77038 2.86843 3.33258 3.44955 3.70290 3.72767 3.92963 3.97971 4.10594 4.19762 4.27984 4.42022 4.49673 4.50551 4.63208 4.66055 4.72056 4.74215 4.83039 4.92184 5.03231 5.07682 5.13105 5.17178 5.20277 5.30580 5.33796 5.41556 5.66895 5.79959 5.87077 5.95308 6.07247 6.16962 6.33419 6.34767 6.65689 6.67398 6.89592 6.90046 6.98835 8.27949 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.027154 B = 0.001837 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.895552 B =15235.620782 C =15637.820241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.064 3.936 3 H 0.086 0.914 4 C -0.147 4.147 5 C 0.109 3.891 6 H 0.108 0.892 7 N -0.680 5.680 8 C 0.513 3.487 9 O -0.538 6.538 10 C 0.502 3.498 11 O -0.547 6.547 12 N -0.683 5.683 13 C 0.191 3.809 14 C -0.234 4.234 15 C -0.066 4.066 16 C -0.244 4.244 17 C 0.085 3.915 18 C -0.496 4.496 19 H 0.077 0.923 20 C 0.036 3.964 21 N -0.819 5.819 22 Si 0.982 3.018 23 H -0.263 1.263 24 H -0.268 1.268 25 H -0.258 1.258 26 C -0.194 4.194 27 C -0.081 4.081 28 C 0.037 3.963 29 O -0.393 6.393 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.421 0.579 36 H 0.414 0.586 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.119 0.881 40 H 0.099 0.901 41 H 0.290 0.710 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.076 0.924 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.258 14.926 -0.017 24.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.007 3.993 3 H 0.104 0.896 4 C -0.185 4.185 5 C 0.004 3.996 6 H 0.126 0.874 7 N -0.335 5.335 8 C 0.294 3.706 9 O -0.415 6.415 10 C 0.283 3.717 11 O -0.426 6.426 12 N -0.334 5.334 13 C 0.069 3.931 14 C -0.236 4.236 15 C -0.085 4.085 16 C -0.264 4.264 17 C 0.083 3.917 18 C -0.524 4.524 19 H 0.095 0.905 20 C -0.180 4.180 21 N -0.445 5.445 22 Si 0.803 3.197 23 H -0.187 1.187 24 H -0.192 1.192 25 H -0.181 1.181 26 C -0.213 4.213 27 C -0.100 4.100 28 C -0.041 4.041 29 O -0.313 6.313 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.133 0.867 34 H 0.113 0.887 35 H 0.259 0.741 36 H 0.250 0.750 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.137 0.863 40 H 0.117 0.883 41 H 0.100 0.900 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.094 0.906 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.374 14.657 0.323 24.296 hybrid contribution 1.301 -0.418 0.213 1.384 sum -18.072 14.239 0.536 23.014 Atomic orbital electron populations 1.21801 0.91655 1.03096 1.03659 1.23409 0.96502 0.95730 0.83623 0.89617 1.23509 0.92840 1.02346 0.99826 1.22606 0.99913 0.82586 0.94493 0.87448 1.45799 1.07064 1.14404 1.66191 1.20140 0.84180 0.87773 0.78528 1.90783 1.45801 1.56415 1.48514 1.20227 0.83873 0.88195 0.79454 1.90733 1.45376 1.56813 1.49663 1.46286 1.07224 1.15144 1.64730 1.19974 0.91885 0.80978 1.00247 1.19184 0.93943 1.14915 0.95531 1.20718 0.93320 0.97434 0.96998 1.21163 0.94823 1.12902 0.97464 1.18040 0.93915 0.88579 0.91178 1.19916 0.93063 1.21754 1.17715 0.90455 1.26776 1.05340 0.92564 0.93322 1.69870 1.40194 1.12385 1.22012 0.85199 0.76143 0.78706 0.79671 1.18749 1.19207 1.18141 1.21274 0.93771 1.07731 0.98532 1.20785 0.94252 0.98048 0.96942 1.23569 0.84811 1.01081 0.94662 1.88961 1.27781 1.74176 1.40345 0.92168 0.91918 0.88773 0.86741 0.88673 0.74051 0.74974 0.91250 0.90576 0.86297 0.88288 0.89970 0.88130 0.87585 0.90604 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.66 71.98 0.70 -0.51 16 2 C 0.06 0.72 3.97 31.28 0.12 0.84 16 3 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 4 C -0.15 -1.37 6.30 31.90 0.20 -1.17 16 5 C 0.11 1.65 3.34 45.98 0.15 1.80 16 6 H 0.11 1.71 7.67 -2.39 -0.02 1.69 16 7 N -0.68 -12.58 5.04 -439.18 -2.21 -14.80 16 8 C 0.51 12.94 7.88 87.27 0.69 13.63 16 9 O -0.54 -15.98 16.19 -3.26 -0.05 -16.04 16 10 C 0.50 14.33 7.89 87.27 0.69 15.02 16 11 O -0.55 -17.11 16.48 -3.24 -0.05 -17.16 16 12 N -0.68 -20.57 5.54 -468.15 -2.59 -23.16 16 13 C 0.19 6.20 5.79 85.63 0.50 6.69 16 14 C -0.23 -9.23 5.27 -19.67 -0.10 -9.33 16 15 C -0.07 -2.71 9.67 22.22 0.21 -2.49 16 16 C -0.24 -11.52 9.80 22.73 0.22 -11.30 16 17 C 0.09 4.51 5.58 -21.29 -0.12 4.39 16 18 C -0.50 -26.23 9.05 23.46 0.21 -26.01 16 19 H 0.08 3.95 7.91 -2.91 -0.02 3.93 16 20 C 0.04 1.77 5.14 85.25 0.44 2.21 16 21 N -0.82 -42.11 10.95 21.83 0.24 -41.87 16 22 Si 0.98 37.51 29.60 68.60 2.03 39.54 16 23 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 24 H -0.27 -9.70 7.11 99.48 0.71 -9.00 16 25 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 26 C -0.19 -9.91 8.70 22.73 0.20 -9.71 16 27 C -0.08 -3.58 9.67 22.22 0.21 -3.37 16 28 C 0.04 0.66 7.49 72.36 0.54 1.20 16 29 O -0.39 -7.23 11.24 -148.98 -1.68 -8.91 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.09 0.80 7.66 -2.39 -0.02 0.78 16 35 H 0.42 6.77 7.82 -92.71 -0.73 6.04 16 36 H 0.41 12.68 7.94 -92.71 -0.74 11.94 16 37 H 0.07 2.24 8.08 -2.38 -0.02 2.22 16 38 H 0.08 2.35 8.08 -2.39 -0.02 2.33 16 39 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 40 H 0.10 4.44 8.06 -2.91 -0.02 4.41 16 41 H 0.29 13.43 8.30 -92.71 -0.77 12.66 16 42 H 0.10 5.43 6.16 -2.91 -0.02 5.41 16 43 H 0.11 4.21 8.06 -2.91 -0.02 4.19 16 44 H 0.08 1.54 7.93 -2.39 -0.02 1.52 16 45 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -62.32 382.13 0.11 -62.20 By element: Atomic # 1 Polarization: 38.74 SS G_CDS: -0.43 Total: 38.30 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: 4.87 Total: -18.11 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -4.57 Total: -79.83 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -1.78 Total: -42.10 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.54 kcal Total: -62.32 0.11 -62.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349274094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.873 kcal (2) G-P(sol) polarization free energy of solvation -62.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds