Wall clock time and date at job start Tue Mar 31 2020 17:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.54685 * 2 1 4 4 C 1.55221 * 110.64788 * 122.94488 * 2 1 3 5 5 C 1.54806 * 101.98845 * 155.43465 * 4 2 1 6 6 H 1.09008 * 110.48502 * 98.00409 * 5 4 2 7 7 N 1.46495 * 110.49342 * 220.51854 * 5 4 2 8 8 C 1.34770 * 120.00628 * 203.15409 * 7 5 4 9 9 O 1.21353 * 120.00133 * 0.02562 * 8 7 5 10 10 C 1.49455 * 120.00227 * 179.97438 * 8 7 5 11 11 O 1.21346 * 119.99941 * 0.02562 * 10 8 7 12 12 N 1.34775 * 119.99686 * 180.02562 * 10 8 7 13 13 C 1.46503 * 119.99639 * 180.02562 * 12 10 8 14 14 C 1.50708 * 109.47110 * 180.02562 * 13 12 10 15 15 C 1.38637 * 119.74339 * 269.72485 * 14 13 12 16 16 C 1.37625 * 120.24363 * 179.71886 * 15 14 13 17 17 C 1.40714 * 119.74083 * 0.52854 * 16 15 14 18 18 C 1.41402 * 120.24062 * 179.72287 * 17 16 15 19 19 H 1.08004 * 119.99955 * 24.40277 * 18 17 16 20 20 C 1.39935 * 120.00066 * 204.40528 * 18 17 16 21 21 N 1.30827 * 120.00004 * 17.85093 * 20 18 17 22 22 Si 1.86806 * 120.00250 * 197.84974 * 20 18 17 23 23 H 1.48501 * 109.46710 * 59.99633 * 22 20 18 24 24 H 1.48492 * 109.47228 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46902 * 299.99997 * 22 20 18 26 26 C 1.40711 * 119.51692 * 359.75040 * 17 16 15 27 27 C 1.37616 * 119.74417 * 359.97438 * 26 17 16 28 28 C 1.54104 * 104.30482 * 339.26681 * 5 4 2 29 29 O 1.43740 * 107.29369 * 357.89953 * 28 5 4 30 30 H 1.09002 * 109.47147 * 181.42198 * 1 2 3 31 31 H 1.08999 * 109.46957 * 301.42197 * 1 2 3 32 32 H 1.08997 * 109.47792 * 61.42206 * 1 2 3 33 33 H 1.08999 * 110.89051 * 37.30428 * 4 2 1 34 34 H 1.08994 * 111.02580 * 273.63107 * 4 2 1 35 35 H 0.97001 * 119.99549 * 23.16228 * 7 5 4 36 36 H 0.97001 * 120.00364 * 0.02562 * 12 10 8 37 37 H 1.08992 * 109.47119 * 60.00326 * 13 12 10 38 38 H 1.09001 * 109.46979 * 299.99957 * 13 12 10 39 39 H 1.07994 * 119.87969 * 359.97438 * 15 14 13 40 40 H 1.07996 * 120.12493 * 180.28338 * 16 15 14 41 41 H 0.97005 * 119.99577 * 180.02562 * 21 20 18 42 42 H 1.08004 * 120.12731 * 180.02562 * 26 17 16 43 43 H 1.08000 * 119.87505 * 180.02562 * 27 26 17 44 44 H 1.08997 * 109.87877 * 117.32875 * 28 5 4 45 45 H 1.09005 * 109.87333 * 238.32310 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0773 -0.7899 1.2189 5 6 3.4795 -1.2178 0.7215 6 1 4.2423 -0.5364 1.0986 7 7 3.7726 -2.5925 1.1341 8 6 5.0507 -3.0088 1.2322 9 8 5.9588 -2.2446 0.9792 10 6 5.3496 -4.4111 1.6536 11 8 4.4416 -5.1752 1.9071 12 7 6.6278 -4.8271 1.7522 13 6 6.9208 -6.2020 2.1648 14 6 8.4131 -6.4099 2.1959 15 6 9.0685 -6.8611 1.0605 16 6 10.4318 -7.0490 1.0757 17 6 11.1588 -6.7920 2.2528 18 6 12.5590 -6.9871 2.2819 19 1 13.1293 -6.9444 1.3657 20 6 13.2057 -7.2354 3.4977 21 7 12.5161 -7.6315 4.5365 22 14 15.0538 -7.0016 3.6376 23 1 15.3988 -5.5905 3.3293 24 1 15.4910 -7.3284 5.0185 25 1 15.7407 -7.9006 2.6756 26 6 10.4822 -6.3400 3.4007 27 6 9.1193 -6.1537 3.3610 28 6 3.3839 -1.1240 -0.8137 29 8 2.0384 -0.7335 -1.1350 30 1 -0.3633 -1.0274 0.0255 31 1 -0.3633 0.5358 0.8770 32 1 -0.3634 0.4916 -0.9024 33 1 1.4564 -1.6610 1.4282 34 1 2.1549 -0.1492 2.0973 35 1 3.0467 -3.2033 1.3365 36 1 7.3536 -4.2163 1.5500 37 1 6.4714 -6.8976 1.4562 38 1 6.5089 -6.3788 3.1584 39 1 8.5078 -7.0618 0.1597 40 1 10.9410 -7.3961 0.1888 41 1 12.9644 -7.8033 5.3794 42 1 11.0305 -6.1393 4.3093 43 1 8.5979 -5.8064 4.2408 44 1 4.0853 -0.3763 -1.1837 45 1 3.6071 -2.0937 -1.2588 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349274096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:47 Heat of formation + Delta-G solvation = -105.407528 kcal Electronic energy + Delta-G solvation = -26934.816697 eV Core-core repulsion = 22916.529539 eV Total energy + Delta-G solvation = -4018.287158 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.87399 -39.76346 -38.39859 -37.65430 -35.40758 -34.62435 -33.46472 -32.55023 -30.56489 -30.40533 -29.39868 -27.34990 -26.49875 -24.99979 -23.36908 -21.82574 -21.49159 -21.11870 -20.29123 -20.19269 -18.57934 -17.42220 -17.35289 -16.83264 -16.21791 -15.83811 -15.77283 -15.48702 -15.24357 -14.67189 -14.35766 -14.16048 -13.87744 -13.80789 -13.50504 -13.41250 -12.96354 -12.90324 -12.59020 -12.29002 -12.11918 -12.06085 -11.98196 -11.81618 -11.62800 -11.55330 -11.35889 -11.22093 -11.14236 -10.66449 -10.59084 -10.18829 -9.79770 -9.60430 -9.51089 -9.46718 -9.24752 -8.90521 -7.60684 -7.49515 -6.89765 -4.49499 1.42716 2.21001 2.66751 2.95989 3.00279 3.01847 3.09287 3.22562 3.40720 3.74500 3.83565 3.99119 4.27273 4.44466 4.49219 4.57971 4.66871 4.76328 4.87935 5.12560 5.18980 5.28958 5.37427 5.47245 5.54918 5.55700 5.68501 5.69685 5.78870 5.99905 6.13695 6.20300 6.29520 6.45540 6.51343 6.83725 6.89444 6.94751 7.14324 7.22876 7.44452 7.47880 7.68177 7.79627 7.92450 7.96785 8.10878 8.16662 8.50625 8.75621 8.83287 10.04124 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029278 B = 0.001812 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.117177 B =15450.845681 C =15703.951852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 H 0.075 0.925 4 C -0.157 4.157 5 C 0.110 3.890 6 H 0.108 0.892 7 N -0.698 5.698 8 C 0.508 3.492 9 O -0.515 6.515 10 C 0.498 3.502 11 O -0.534 6.534 12 N -0.681 5.681 13 C 0.182 3.818 14 C -0.252 4.252 15 C -0.067 4.067 16 C -0.229 4.229 17 C 0.118 3.882 18 C -0.457 4.457 19 H 0.080 0.920 20 C 0.076 3.924 21 N -0.786 5.786 22 Si 0.910 3.090 23 H -0.262 1.262 24 H -0.277 1.277 25 H -0.264 1.264 26 C -0.170 4.170 27 C -0.079 4.079 28 C 0.037 3.963 29 O -0.372 6.372 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.414 0.586 36 H 0.413 0.587 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.283 0.717 42 H 0.119 0.881 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.725 12.689 -3.903 22.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 H 0.093 0.907 4 C -0.195 4.195 5 C 0.005 3.995 6 H 0.126 0.874 7 N -0.353 5.353 8 C 0.289 3.711 9 O -0.390 6.390 10 C 0.277 3.723 11 O -0.412 6.412 12 N -0.332 5.332 13 C 0.061 3.939 14 C -0.254 4.254 15 C -0.086 4.086 16 C -0.249 4.249 17 C 0.115 3.885 18 C -0.486 4.486 19 H 0.098 0.902 20 C -0.143 4.143 21 N -0.410 5.410 22 Si 0.734 3.266 23 H -0.187 1.187 24 H -0.202 1.202 25 H -0.189 1.189 26 C -0.189 4.189 27 C -0.098 4.098 28 C -0.041 4.041 29 O -0.291 6.291 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.251 0.749 36 H 0.249 0.751 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.094 0.906 42 H 0.137 0.863 43 H 0.107 0.893 44 H 0.089 0.911 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -17.772 12.535 -3.835 22.083 hybrid contribution 1.059 0.009 0.363 1.119 sum -16.713 12.544 -3.472 21.183 Atomic orbital electron populations 1.21777 0.92725 1.03178 1.02710 1.23161 0.95604 0.95413 0.84420 0.90733 1.23537 0.94834 1.01806 0.99370 1.22465 0.98332 0.83830 0.94889 0.87361 1.45816 1.07930 1.13294 1.68214 1.20525 0.83399 0.88942 0.78231 1.90780 1.44924 1.55626 1.47669 1.20006 0.84584 0.87565 0.80109 1.90736 1.45121 1.55573 1.49803 1.46504 1.06517 1.15506 1.64712 1.20133 0.94317 0.80022 0.99413 1.18905 0.92288 1.18016 0.96164 1.20410 0.94442 0.98165 0.95549 1.20963 0.93234 1.11509 0.99195 1.17686 0.93122 0.86757 0.90940 1.19651 0.92644 1.42194 0.94063 0.90215 1.25966 1.01201 0.92027 0.95154 1.69816 1.38660 1.30099 1.02420 0.86328 0.81865 0.80166 0.78203 1.18684 1.20227 1.18879 1.21309 0.92900 1.04654 1.00035 1.20552 0.94699 0.99168 0.95352 1.23641 0.84557 1.01713 0.94232 1.88929 1.27697 1.73704 1.38753 0.91622 0.90926 0.91587 0.89326 0.88961 0.74862 0.75052 0.91689 0.91633 0.89292 0.88799 0.90560 0.86321 0.89326 0.91084 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.66 37.16 0.36 -0.41 16 2 C 0.07 0.48 3.98 -25.55 -0.10 0.38 16 3 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 4 C -0.16 -0.96 6.32 -24.60 -0.16 -1.12 16 5 C 0.11 0.94 3.37 -66.40 -0.22 0.72 16 6 H 0.11 0.97 7.61 -51.92 -0.40 0.58 16 7 N -0.70 -7.11 5.03 -52.75 -0.27 -7.38 16 8 C 0.51 6.80 7.89 -11.59 -0.09 6.71 16 9 O -0.52 -7.96 16.16 5.49 0.09 -7.87 16 10 C 0.50 7.56 7.89 -11.58 -0.09 7.47 16 11 O -0.53 -8.93 16.48 5.50 0.09 -8.84 16 12 N -0.68 -10.88 5.54 -61.90 -0.34 -11.23 16 13 C 0.18 3.16 5.79 -5.19 -0.03 3.13 16 14 C -0.25 -5.13 5.27 -104.33 -0.55 -5.68 16 15 C -0.07 -1.41 9.67 -39.66 -0.38 -1.80 16 16 C -0.23 -5.38 9.80 -38.87 -0.38 -5.76 16 17 C 0.12 3.01 5.58 -106.82 -0.60 2.42 16 18 C -0.46 -11.65 9.05 -37.74 -0.34 -11.99 16 19 H 0.08 1.95 7.91 -52.48 -0.41 1.53 16 20 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 21 N -0.79 -19.55 10.95 55.55 0.61 -18.94 16 22 Si 0.91 17.97 29.60 -169.99 -5.03 12.94 16 23 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 24 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 25 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 26 C -0.17 -4.21 8.70 -38.88 -0.34 -4.54 16 27 C -0.08 -1.73 9.67 -39.66 -0.38 -2.12 16 28 C 0.04 0.34 7.50 37.73 0.28 0.62 16 29 O -0.37 -3.59 11.23 -35.23 -0.40 -3.99 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.51 7.67 -51.93 -0.40 0.11 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.41 3.80 7.84 -40.82 -0.32 3.48 16 36 H 0.41 6.62 7.94 -40.82 -0.32 6.30 16 37 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 38 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 39 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 41 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 42 H 0.12 3.05 6.16 -52.48 -0.32 2.73 16 43 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.09 0.91 7.93 -51.93 -0.41 0.50 16 LS Contribution 382.10 15.07 5.76 5.76 Total: -1.00 -28.37 382.10 -8.97 -37.34 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -6.37 Total: 12.44 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -3.11 Total: -10.24 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.00 Total: -37.54 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.22 Total: -20.69 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.37 -8.97 -37.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349274096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.071 kcal (2) G-P(sol) polarization free energy of solvation -28.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds