Wall clock time and date at job start Tue Mar 31 2020 17:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.54685 * 2 1 4 4 C 1.55221 * 110.64788 * 122.94488 * 2 1 3 5 5 C 1.54806 * 101.98845 * 155.43465 * 4 2 1 6 6 H 1.09008 * 110.48502 * 98.00409 * 5 4 2 7 7 N 1.46495 * 110.49342 * 220.51854 * 5 4 2 8 8 C 1.34770 * 120.00628 * 203.15409 * 7 5 4 9 9 O 1.21353 * 120.00133 * 0.02562 * 8 7 5 10 10 C 1.49455 * 120.00227 * 179.97438 * 8 7 5 11 11 O 1.21346 * 119.99941 * 0.02562 * 10 8 7 12 12 N 1.34775 * 119.99686 * 180.02562 * 10 8 7 13 13 C 1.46503 * 119.99639 * 180.02562 * 12 10 8 14 14 C 1.50708 * 109.47110 * 180.02562 * 13 12 10 15 15 C 1.38637 * 119.74339 * 269.72485 * 14 13 12 16 16 C 1.37625 * 120.24363 * 179.71886 * 15 14 13 17 17 C 1.40714 * 119.74083 * 0.52854 * 16 15 14 18 18 C 1.41402 * 120.24062 * 179.72287 * 17 16 15 19 19 H 1.08004 * 119.99955 * 24.40277 * 18 17 16 20 20 C 1.39935 * 120.00066 * 204.40528 * 18 17 16 21 21 N 1.30827 * 120.00004 * 17.85093 * 20 18 17 22 22 Si 1.86806 * 120.00250 * 197.84974 * 20 18 17 23 23 H 1.48501 * 109.46710 * 59.99633 * 22 20 18 24 24 H 1.48492 * 109.47228 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46902 * 299.99997 * 22 20 18 26 26 C 1.40711 * 119.51692 * 359.75040 * 17 16 15 27 27 C 1.37616 * 119.74417 * 359.97438 * 26 17 16 28 28 C 1.54104 * 104.30482 * 339.26681 * 5 4 2 29 29 O 1.43740 * 107.29369 * 357.89953 * 28 5 4 30 30 H 1.09002 * 109.47147 * 181.42198 * 1 2 3 31 31 H 1.08999 * 109.46957 * 301.42197 * 1 2 3 32 32 H 1.08997 * 109.47792 * 61.42206 * 1 2 3 33 33 H 1.08999 * 110.89051 * 37.30428 * 4 2 1 34 34 H 1.08994 * 111.02580 * 273.63107 * 4 2 1 35 35 H 0.97001 * 119.99549 * 23.16228 * 7 5 4 36 36 H 0.97001 * 120.00364 * 0.02562 * 12 10 8 37 37 H 1.08992 * 109.47119 * 60.00326 * 13 12 10 38 38 H 1.09001 * 109.46979 * 299.99957 * 13 12 10 39 39 H 1.07994 * 119.87969 * 359.97438 * 15 14 13 40 40 H 1.07996 * 120.12493 * 180.28338 * 16 15 14 41 41 H 0.97005 * 119.99577 * 180.02562 * 21 20 18 42 42 H 1.08004 * 120.12731 * 180.02562 * 26 17 16 43 43 H 1.08000 * 119.87505 * 180.02562 * 27 26 17 44 44 H 1.08997 * 109.87877 * 117.32875 * 28 5 4 45 45 H 1.09005 * 109.87333 * 238.32310 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0773 -0.7899 1.2189 5 6 3.4795 -1.2178 0.7215 6 1 4.2423 -0.5364 1.0986 7 7 3.7726 -2.5925 1.1341 8 6 5.0507 -3.0088 1.2322 9 8 5.9588 -2.2446 0.9792 10 6 5.3496 -4.4111 1.6536 11 8 4.4416 -5.1752 1.9071 12 7 6.6278 -4.8271 1.7522 13 6 6.9208 -6.2020 2.1648 14 6 8.4131 -6.4099 2.1959 15 6 9.0685 -6.8611 1.0605 16 6 10.4318 -7.0490 1.0757 17 6 11.1588 -6.7920 2.2528 18 6 12.5590 -6.9871 2.2819 19 1 13.1293 -6.9444 1.3657 20 6 13.2057 -7.2354 3.4977 21 7 12.5161 -7.6315 4.5365 22 14 15.0538 -7.0016 3.6376 23 1 15.3988 -5.5905 3.3293 24 1 15.4910 -7.3284 5.0185 25 1 15.7407 -7.9006 2.6756 26 6 10.4822 -6.3400 3.4007 27 6 9.1193 -6.1537 3.3610 28 6 3.3839 -1.1240 -0.8137 29 8 2.0384 -0.7335 -1.1350 30 1 -0.3633 -1.0274 0.0255 31 1 -0.3633 0.5358 0.8770 32 1 -0.3634 0.4916 -0.9024 33 1 1.4564 -1.6610 1.4282 34 1 2.1549 -0.1492 2.0973 35 1 3.0467 -3.2033 1.3365 36 1 7.3536 -4.2163 1.5500 37 1 6.4714 -6.8976 1.4562 38 1 6.5089 -6.3788 3.1584 39 1 8.5078 -7.0618 0.1597 40 1 10.9410 -7.3961 0.1888 41 1 12.9644 -7.8033 5.3794 42 1 11.0305 -6.1393 4.3093 43 1 8.5979 -5.8064 4.2408 44 1 4.0853 -0.3763 -1.1837 45 1 3.6071 -2.0937 -1.2588 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349274096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:41 Heat of formation + Delta-G solvation = -123.984169 kcal Electronic energy + Delta-G solvation = -26935.622241 eV Core-core repulsion = 22916.529539 eV Total energy + Delta-G solvation = -4019.092702 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 7.10 seconds Orbital eigenvalues (eV) -41.89374 -40.64717 -39.68448 -39.19757 -36.64509 -35.87518 -35.04188 -33.08920 -32.16104 -31.25678 -31.18169 -28.92417 -27.07288 -26.39485 -24.75816 -22.92536 -22.45474 -22.30507 -21.86577 -21.31945 -19.74329 -19.25188 -18.19855 -17.70234 -17.25716 -17.07613 -16.88862 -16.62384 -16.47075 -15.92519 -15.72121 -15.61546 -15.15386 -14.97931 -14.70434 -14.37225 -14.25903 -13.84583 -13.62461 -13.47036 -13.43221 -13.33392 -13.00410 -12.88267 -12.83022 -12.76142 -12.60873 -12.40280 -12.23175 -12.18310 -11.86161 -11.52366 -11.31321 -11.05722 -10.87319 -10.78458 -10.32391 -10.22216 -9.41317 -9.30856 -8.68385 -6.38529 0.28493 0.76210 1.12598 1.31155 1.38493 1.49284 1.55736 2.08163 2.18976 2.53542 2.77188 2.86729 3.34030 3.45156 3.69999 3.72911 3.92495 3.98002 4.10645 4.19588 4.28053 4.42292 4.49802 4.50882 4.63167 4.66202 4.72111 4.74491 4.83146 4.92440 5.03213 5.07662 5.13034 5.17110 5.20201 5.30624 5.33910 5.41661 5.66952 5.80256 5.87533 5.95521 6.07138 6.17035 6.33453 6.34892 6.65630 6.67346 6.89557 6.90126 6.98924 8.28019 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029278 B = 0.001812 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.117177 B =15450.845681 C =15703.951852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.065 3.935 3 H 0.085 0.915 4 C -0.148 4.148 5 C 0.107 3.893 6 H 0.107 0.893 7 N -0.680 5.680 8 C 0.513 3.487 9 O -0.539 6.539 10 C 0.502 3.498 11 O -0.547 6.547 12 N -0.683 5.683 13 C 0.191 3.809 14 C -0.234 4.234 15 C -0.067 4.067 16 C -0.245 4.245 17 C 0.086 3.914 18 C -0.496 4.496 19 H 0.077 0.923 20 C 0.036 3.964 21 N -0.819 5.819 22 Si 0.982 3.018 23 H -0.261 1.261 24 H -0.267 1.267 25 H -0.259 1.259 26 C -0.193 4.193 27 C -0.081 4.081 28 C 0.037 3.963 29 O -0.392 6.392 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.421 0.579 36 H 0.414 0.586 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.290 0.710 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.073 0.927 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.374 13.708 -3.841 24.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.008 3.992 3 H 0.103 0.897 4 C -0.186 4.186 5 C 0.003 3.997 6 H 0.125 0.875 7 N -0.335 5.335 8 C 0.294 3.706 9 O -0.415 6.415 10 C 0.283 3.717 11 O -0.426 6.426 12 N -0.334 5.334 13 C 0.069 3.931 14 C -0.236 4.236 15 C -0.085 4.085 16 C -0.264 4.264 17 C 0.083 3.917 18 C -0.525 4.525 19 H 0.095 0.905 20 C -0.180 4.180 21 N -0.444 5.444 22 Si 0.802 3.198 23 H -0.185 1.185 24 H -0.191 1.191 25 H -0.183 1.183 26 C -0.213 4.213 27 C -0.100 4.100 28 C -0.041 4.041 29 O -0.312 6.312 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.131 0.869 35 H 0.259 0.741 36 H 0.250 0.750 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.136 0.864 40 H 0.117 0.883 41 H 0.101 0.899 42 H 0.119 0.881 43 H 0.125 0.875 44 H 0.091 0.909 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.475 13.562 -3.781 24.031 hybrid contribution 1.323 -0.267 0.282 1.379 sum -18.151 13.296 -3.499 22.771 Atomic orbital electron populations 1.21800 0.91653 1.03189 1.03559 1.23408 0.96488 0.95698 0.83609 0.89670 1.23550 0.92925 1.02300 0.99798 1.22620 0.99887 0.82553 0.94655 0.87520 1.45795 1.06922 1.14158 1.66578 1.20140 0.84195 0.87856 0.78412 1.90782 1.45756 1.55824 1.49172 1.20226 0.83889 0.88266 0.79368 1.90733 1.45357 1.56202 1.50293 1.46289 1.07079 1.14920 1.65096 1.19975 0.91874 0.81046 1.00185 1.19183 0.93918 1.15414 0.95083 1.20719 0.93752 0.97168 0.96894 1.21160 0.94422 1.11972 0.98862 1.18035 0.93846 0.87773 0.92038 1.19890 0.93245 1.44501 0.94893 0.90466 1.26770 1.05745 0.91080 0.94361 1.69864 1.40581 1.30920 1.03041 0.85257 0.75984 0.79968 0.78574 1.18532 1.19139 1.18335 1.21273 0.94134 1.06383 0.99494 1.20783 0.93868 0.98560 0.96751 1.23573 0.84767 1.01185 0.94534 1.88916 1.27718 1.74239 1.40314 0.92087 0.88851 0.91933 0.88692 0.86892 0.74066 0.74973 0.90703 0.91127 0.86413 0.88347 0.89944 0.88074 0.87477 0.90886 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.66 71.98 0.70 -0.50 16 2 C 0.07 0.72 3.98 31.36 0.12 0.85 16 3 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 4 C -0.15 -1.41 6.32 31.97 0.20 -1.20 16 5 C 0.11 1.64 3.37 45.98 0.15 1.79 16 6 H 0.11 1.73 7.61 -2.38 -0.02 1.71 16 7 N -0.68 -12.60 5.03 -439.18 -2.21 -14.81 16 8 C 0.51 12.95 7.89 87.27 0.69 13.64 16 9 O -0.54 -16.00 16.16 -3.26 -0.05 -16.05 16 10 C 0.50 14.33 7.89 87.27 0.69 15.02 16 11 O -0.55 -17.12 16.48 -3.23 -0.05 -17.17 16 12 N -0.68 -20.57 5.54 -468.13 -2.59 -23.17 16 13 C 0.19 6.20 5.79 85.63 0.50 6.70 16 14 C -0.23 -9.24 5.27 -19.67 -0.10 -9.34 16 15 C -0.07 -2.75 9.67 22.22 0.21 -2.53 16 16 C -0.24 -11.60 9.80 22.73 0.22 -11.38 16 17 C 0.09 4.52 5.58 -21.29 -0.12 4.40 16 18 C -0.50 -26.26 9.05 23.46 0.21 -26.05 16 19 H 0.08 3.93 7.91 -2.91 -0.02 3.91 16 20 C 0.04 1.80 5.14 85.25 0.44 2.23 16 21 N -0.82 -41.95 10.95 21.82 0.24 -41.71 16 22 Si 0.98 37.38 29.60 68.60 2.03 39.41 16 23 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 24 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 25 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 26 C -0.19 -9.86 8.70 22.73 0.20 -9.66 16 27 C -0.08 -3.54 9.67 22.22 0.21 -3.33 16 28 C 0.04 0.65 7.50 72.36 0.54 1.19 16 29 O -0.39 -7.08 11.23 -148.98 -1.67 -8.76 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.09 0.82 7.67 -2.39 -0.02 0.80 16 34 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.42 6.80 7.84 -92.71 -0.73 6.07 16 36 H 0.41 12.68 7.94 -92.71 -0.74 11.95 16 37 H 0.07 2.33 8.08 -2.39 -0.02 2.31 16 38 H 0.07 2.26 8.08 -2.39 -0.02 2.25 16 39 H 0.12 4.13 8.06 -2.91 -0.02 4.11 16 40 H 0.10 4.44 8.06 -2.91 -0.02 4.41 16 41 H 0.29 13.42 8.30 -92.70 -0.77 12.65 16 42 H 0.10 5.43 6.16 -2.91 -0.02 5.42 16 43 H 0.11 4.21 8.06 -2.91 -0.02 4.19 16 44 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.08 1.53 7.93 -2.38 -0.02 1.51 16 Total: -1.00 -62.04 382.10 0.13 -61.92 By element: Atomic # 1 Polarization: 38.95 SS G_CDS: -0.43 Total: 38.51 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 4.87 Total: -18.18 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -4.56 Total: -79.69 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -1.78 Total: -41.98 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 2.03 Total: 39.41 kcal Total: -62.04 0.13 -61.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349274096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.066 kcal (2) G-P(sol) polarization free energy of solvation -62.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.10 seconds