Wall clock time and date at job start Tue Mar 31 2020 17:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.01546 * 2 1 4 4 C 1.54263 * 110.07346 * 121.42047 * 2 1 3 5 5 C 1.54884 * 104.19582 * 142.91765 * 4 2 1 6 6 C 1.54897 * 102.74849 * 322.05665 * 5 4 2 7 7 H 1.08999 * 110.59745 * 279.20833 * 6 5 4 8 8 N 1.46498 * 110.48526 * 156.62545 * 6 5 4 9 9 C 1.34775 * 120.00391 * 89.95040 * 8 6 5 10 10 O 1.21361 * 119.99689 * 0.27062 * 9 8 6 11 11 C 1.49318 * 119.99738 * 180.27438 * 9 8 6 12 12 O 1.21381 * 120.00487 * 359.97438 * 11 9 8 13 13 N 1.34781 * 119.99391 * 180.02562 * 11 9 8 14 14 C 1.39742 * 119.99616 * 174.78665 * 13 11 9 15 15 C 1.38997 * 120.01000 * 326.09189 * 14 13 11 16 16 C 1.37966 * 119.99180 * 179.71973 * 15 14 13 17 17 C 1.38935 * 120.00724 * 0.57669 * 16 15 14 18 18 O 1.35763 * 119.99215 * 179.71619 * 17 16 15 19 19 C 1.34802 * 116.99846 * 185.88927 * 18 17 16 20 20 H 1.08003 * 119.99728 * 5.41882 * 19 18 17 21 21 C 1.38646 * 119.99632 * 185.40773 * 19 18 17 22 22 N 1.31561 * 120.00616 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99722 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47252 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46793 * 120.00438 * 23 21 19 26 26 H 1.48496 * 109.47405 * 240.00336 * 23 21 19 27 27 C 1.38934 * 120.01633 * 359.69701 * 17 16 15 28 28 C 1.37969 * 120.00555 * 0.02562 * 27 17 16 29 29 C 1.53877 * 110.02996 * 238.61028 * 2 1 3 30 30 H 1.09001 * 109.47446 * 181.39015 * 1 2 3 31 31 H 1.09002 * 109.47164 * 301.38952 * 1 2 3 32 32 H 1.08996 * 109.47052 * 61.38706 * 1 2 3 33 33 H 1.09001 * 110.48356 * 261.59473 * 4 2 1 34 34 H 1.08999 * 110.48657 * 24.23434 * 4 2 1 35 35 H 1.09006 * 110.75791 * 203.74298 * 5 4 2 36 36 H 1.08998 * 110.76078 * 80.37020 * 5 4 2 37 37 H 0.97008 * 119.99442 * 270.22151 * 8 6 5 38 38 H 0.96993 * 120.00331 * 354.78737 * 13 11 9 39 39 H 1.08002 * 120.00013 * 359.97438 * 15 14 13 40 40 H 1.07996 * 119.99417 * 180.29513 * 16 15 14 41 41 H 0.96994 * 120.00419 * 179.97438 * 22 21 19 42 42 H 1.07997 * 119.99977 * 180.02562 * 27 17 16 43 43 H 1.07998 * 120.00352 * 180.02562 * 28 27 17 44 44 H 1.09004 * 110.02780 * 121.38147 * 29 2 1 45 45 H 1.09002 * 110.07322 * 359.97390 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0595 -0.7553 1.2365 5 6 3.3150 -1.4996 0.7181 6 6 2.8885 -1.9396 -0.7045 7 1 2.2794 -2.8425 -0.6602 8 7 4.0660 -2.1578 -1.5483 9 6 4.6416 -3.3754 -1.6002 10 8 4.1815 -4.2922 -0.9516 11 6 5.8455 -3.5961 -2.4555 12 8 6.3054 -2.6793 -3.1045 13 7 6.4208 -4.8139 -2.5077 14 6 7.4790 -5.0494 -3.3894 15 6 7.5129 -4.4077 -4.6219 16 6 8.5608 -4.6360 -5.4898 17 6 9.5760 -5.5165 -5.1369 18 8 10.6041 -5.7453 -5.9935 19 6 11.4904 -6.6994 -5.6449 20 1 11.3173 -7.3017 -4.7652 21 6 12.6239 -6.9075 -6.4157 22 7 12.8348 -6.1737 -7.4870 23 14 13.8516 -8.2301 -5.9329 24 1 13.3862 -8.9105 -4.6978 25 1 13.9669 -9.2230 -7.0312 26 1 15.1775 -7.6085 -5.6865 27 6 9.5396 -6.1624 -3.9074 28 6 8.4949 -5.9301 -3.0366 29 6 2.0571 -0.7530 -1.2341 30 1 -0.3634 -1.0273 0.0249 31 1 -0.3633 0.5353 0.8773 32 1 -0.3633 0.4921 -0.9021 33 1 2.3306 -0.0534 2.0251 34 1 1.3159 -1.4664 1.5964 35 1 3.5347 -2.3668 1.3410 36 1 4.1718 -0.8274 0.6738 37 1 4.4337 -1.4250 -2.0667 38 1 6.1003 -5.5267 -1.9333 39 1 6.7211 -3.7273 -4.8985 40 1 8.5896 -4.1338 -6.4454 41 1 13.6280 -6.3190 -8.0260 42 1 10.3291 -6.8464 -3.6331 43 1 8.4668 -6.4319 -2.0807 44 1 2.6860 -0.0942 -1.8330 45 1 1.2233 -1.1191 -1.8333 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353368470.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:35 Heat of formation + Delta-G solvation = -80.003531 kcal Electronic energy + Delta-G solvation = -26998.849877 eV Core-core repulsion = 22981.664319 eV Total energy + Delta-G solvation = -4017.185558 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 3.70 seconds Orbital eigenvalues (eV) -40.96077 -39.65781 -38.77758 -38.08869 -36.61977 -34.75787 -33.82513 -32.23336 -30.92991 -30.29777 -28.99352 -28.23219 -25.82181 -25.33573 -24.18190 -22.35273 -21.54933 -20.95910 -20.41366 -20.07337 -18.70847 -18.02788 -17.41545 -17.01448 -16.25714 -16.14630 -15.87765 -15.22654 -14.85377 -14.62243 -14.54133 -14.09361 -14.07312 -13.79483 -13.72071 -13.59943 -13.39256 -12.87905 -12.61126 -12.58483 -12.35480 -11.99139 -11.85391 -11.70087 -11.66214 -11.51140 -11.34885 -11.19258 -11.14234 -11.11126 -10.90838 -10.70159 -10.45450 -9.83113 -9.61493 -9.46738 -9.30144 -8.77481 -8.28151 -7.01261 -6.49311 -4.06929 1.23667 2.12623 2.17014 2.35906 3.09277 3.11879 3.17521 3.21884 3.58671 3.93444 4.05984 4.14357 4.34645 4.42292 4.52441 4.82131 4.87142 4.97595 5.00868 5.06212 5.11153 5.13923 5.24293 5.34176 5.38840 5.50184 5.50433 5.62121 5.68608 5.68949 5.73645 5.78957 5.96493 6.02729 6.07520 6.12948 6.16042 6.69647 6.71898 6.79153 6.98245 7.04833 7.16625 7.32473 7.47252 7.65718 7.72475 7.94929 8.07661 8.95986 9.65206 10.68413 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.041785 B = 0.001780 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.939278 B =15728.511766 C =16092.151388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 H 0.075 0.925 4 C -0.119 4.119 5 C -0.137 4.137 6 C 0.137 3.863 7 H 0.099 0.901 8 N -0.696 5.696 9 C 0.513 3.487 10 O -0.522 6.522 11 C 0.495 3.505 12 O -0.509 6.509 13 N -0.624 5.624 14 C 0.026 3.974 15 C -0.064 4.064 16 C -0.178 4.178 17 C 0.150 3.850 18 O -0.173 6.173 19 C -0.392 4.392 20 H 0.093 0.907 21 C 0.039 3.961 22 N -0.859 5.859 23 Si 0.942 3.058 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.219 4.219 28 C -0.082 4.082 29 C -0.129 4.129 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.413 0.587 38 H 0.414 0.586 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.270 0.730 42 H 0.133 0.867 43 H 0.114 0.886 44 H 0.073 0.927 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.229 9.361 15.181 27.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 H 0.094 0.906 4 C -0.157 4.157 5 C -0.176 4.176 6 C 0.033 3.967 7 H 0.117 0.883 8 N -0.349 5.349 9 C 0.294 3.706 10 O -0.398 6.398 11 C 0.276 3.724 12 O -0.385 6.385 13 N -0.270 5.270 14 C -0.067 4.067 15 C -0.084 4.084 16 C -0.198 4.198 17 C 0.095 3.905 18 O -0.076 6.076 19 C -0.468 4.468 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.494 5.494 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.239 4.239 28 C -0.102 4.102 29 C -0.167 4.167 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.250 0.750 38 H 0.250 0.750 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.080 0.920 42 H 0.151 0.849 43 H 0.132 0.868 44 H 0.092 0.908 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.021 9.473 14.762 27.378 hybrid contribution 0.696 -0.648 0.364 1.019 sum -20.325 8.825 15.127 26.829 Atomic orbital electron populations 1.21905 0.94716 1.02001 1.01759 1.21702 0.95921 0.99537 0.94220 0.90631 1.22410 0.97026 0.99034 0.97215 1.22921 0.98329 1.00617 0.95711 1.22003 0.85786 0.99300 0.89600 0.88290 1.45853 1.30252 1.11769 1.47062 1.20187 0.84585 0.83484 0.82378 1.90753 1.63543 1.41974 1.43497 1.20027 0.84991 0.83666 0.83694 1.90786 1.62766 1.41451 1.43451 1.42884 1.32672 1.11986 1.39438 1.17221 0.91654 1.06324 0.91460 1.20577 0.97997 0.98561 0.91237 1.20099 0.94810 1.03459 1.01385 1.19450 0.89126 0.92754 0.89135 1.83997 1.31143 1.51450 1.41020 1.21387 1.01399 1.11171 1.12844 0.88920 1.25312 0.97182 0.98572 0.95461 1.70046 1.27179 1.37945 1.14201 0.85635 0.79604 0.79360 0.78759 1.19053 1.20108 1.20116 1.20991 1.00936 1.06645 0.95282 1.20505 0.92553 0.98406 0.98733 1.22527 0.99773 0.96312 0.98062 0.92429 0.92584 0.92587 0.91249 0.91101 0.90791 0.90822 0.75010 0.75000 0.85803 0.85926 0.91968 0.84891 0.86843 0.90803 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 8.85 37.16 0.33 -0.34 16 2 C -0.09 -0.49 3.50 -89.50 -0.31 -0.80 16 3 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 4 C -0.12 -0.66 6.36 -25.08 -0.16 -0.82 16 5 C -0.14 -0.99 6.58 -24.74 -0.16 -1.16 16 6 C 0.14 1.08 3.22 -66.27 -0.21 0.86 16 7 H 0.10 0.89 7.56 -51.93 -0.39 0.49 16 8 N -0.70 -6.65 5.15 -52.67 -0.27 -6.92 16 9 C 0.51 6.37 7.88 -11.65 -0.09 6.27 16 10 O -0.52 -7.28 16.13 5.49 0.09 -7.20 16 11 C 0.50 7.20 7.62 -11.65 -0.09 7.11 16 12 O -0.51 -8.50 14.19 5.47 0.08 -8.43 16 13 N -0.62 -9.19 5.32 -10.27 -0.05 -9.25 16 14 C 0.03 0.46 6.27 -83.69 -0.52 -0.07 16 15 C -0.06 -1.23 8.64 -39.40 -0.34 -1.57 16 16 C -0.18 -3.81 9.98 -39.42 -0.39 -4.21 16 17 C 0.15 3.58 6.65 -39.07 -0.26 3.32 16 18 O -0.17 -4.87 9.75 0.09 0.00 -4.87 16 19 C -0.39 -10.74 9.44 30.88 0.29 -10.45 16 20 H 0.09 2.33 5.29 -52.48 -0.28 2.06 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -24.90 13.67 55.48 0.76 -24.14 16 23 Si 0.94 20.18 29.55 -169.99 -5.02 15.16 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 25 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 27 C -0.22 -4.62 9.12 -39.42 -0.36 -4.98 16 28 C -0.08 -1.47 9.96 -39.40 -0.39 -1.86 16 29 C -0.13 -0.75 6.19 -25.62 -0.16 -0.91 16 30 H 0.06 0.27 8.12 -51.93 -0.42 -0.15 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.38 7.84 -51.93 -0.41 -0.03 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.41 3.57 7.84 -40.82 -0.32 3.25 16 38 H 0.41 5.17 8.29 -40.82 -0.34 4.84 16 39 H 0.12 2.25 6.45 -52.49 -0.34 1.92 16 40 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 41 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.13 2.78 5.71 -52.49 -0.30 2.48 16 43 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 44 H 0.07 0.40 7.73 -51.93 -0.40 0.00 16 45 H 0.08 0.43 7.67 -51.93 -0.40 0.03 16 LS Contribution 376.62 15.07 5.68 5.68 Total: -1.00 -31.78 376.62 -7.79 -39.57 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -6.11 Total: 9.02 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -2.93 Total: -8.63 kcal Atomic # 7 Polarization: -40.74 SS G_CDS: 0.43 Total: -40.31 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: 0.17 Total: -20.49 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.78 -7.79 -39.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353368470.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.432 kcal (2) G-P(sol) polarization free energy of solvation -31.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.71 seconds