Wall clock time and date at job start Tue Mar 31 2020 17:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 110.01546 * 2 1 4 4 C 1.54263 * 110.07346 * 121.42047 * 2 1 3 5 5 C 1.54884 * 104.19582 * 142.91765 * 4 2 1 6 6 C 1.54897 * 102.74849 * 322.05665 * 5 4 2 7 7 H 1.08999 * 110.59745 * 279.20833 * 6 5 4 8 8 N 1.46498 * 110.48526 * 156.62545 * 6 5 4 9 9 C 1.34775 * 120.00391 * 89.95040 * 8 6 5 10 10 O 1.21361 * 119.99689 * 0.27062 * 9 8 6 11 11 C 1.49318 * 119.99738 * 180.27438 * 9 8 6 12 12 O 1.21381 * 120.00487 * 359.97438 * 11 9 8 13 13 N 1.34781 * 119.99391 * 180.02562 * 11 9 8 14 14 C 1.39742 * 119.99616 * 174.78665 * 13 11 9 15 15 C 1.38997 * 120.01000 * 326.09189 * 14 13 11 16 16 C 1.37966 * 119.99180 * 179.71973 * 15 14 13 17 17 C 1.38935 * 120.00724 * 0.57669 * 16 15 14 18 18 O 1.35763 * 119.99215 * 179.71619 * 17 16 15 19 19 C 1.34802 * 116.99846 * 185.88927 * 18 17 16 20 20 H 1.08003 * 119.99728 * 5.41882 * 19 18 17 21 21 C 1.38646 * 119.99632 * 185.40773 * 19 18 17 22 22 N 1.31561 * 120.00616 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99722 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47252 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46793 * 120.00438 * 23 21 19 26 26 H 1.48496 * 109.47405 * 240.00336 * 23 21 19 27 27 C 1.38934 * 120.01633 * 359.69701 * 17 16 15 28 28 C 1.37969 * 120.00555 * 0.02562 * 27 17 16 29 29 C 1.53877 * 110.02996 * 238.61028 * 2 1 3 30 30 H 1.09001 * 109.47446 * 181.39015 * 1 2 3 31 31 H 1.09002 * 109.47164 * 301.38952 * 1 2 3 32 32 H 1.08996 * 109.47052 * 61.38706 * 1 2 3 33 33 H 1.09001 * 110.48356 * 261.59473 * 4 2 1 34 34 H 1.08999 * 110.48657 * 24.23434 * 4 2 1 35 35 H 1.09006 * 110.75791 * 203.74298 * 5 4 2 36 36 H 1.08998 * 110.76078 * 80.37020 * 5 4 2 37 37 H 0.97008 * 119.99442 * 270.22151 * 8 6 5 38 38 H 0.96993 * 120.00331 * 354.78737 * 13 11 9 39 39 H 1.08002 * 120.00013 * 359.97438 * 15 14 13 40 40 H 1.07996 * 119.99417 * 180.29513 * 16 15 14 41 41 H 0.96994 * 120.00419 * 179.97438 * 22 21 19 42 42 H 1.07997 * 119.99977 * 180.02562 * 27 17 16 43 43 H 1.07998 * 120.00352 * 180.02562 * 28 27 17 44 44 H 1.09004 * 110.02780 * 121.38147 * 29 2 1 45 45 H 1.09002 * 110.07322 * 359.97390 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0595 -0.7553 1.2365 5 6 3.3150 -1.4996 0.7181 6 6 2.8885 -1.9396 -0.7045 7 1 2.2794 -2.8425 -0.6602 8 7 4.0660 -2.1578 -1.5483 9 6 4.6416 -3.3754 -1.6002 10 8 4.1815 -4.2922 -0.9516 11 6 5.8455 -3.5961 -2.4555 12 8 6.3054 -2.6793 -3.1045 13 7 6.4208 -4.8139 -2.5077 14 6 7.4790 -5.0494 -3.3894 15 6 7.5129 -4.4077 -4.6219 16 6 8.5608 -4.6360 -5.4898 17 6 9.5760 -5.5165 -5.1369 18 8 10.6041 -5.7453 -5.9935 19 6 11.4904 -6.6994 -5.6449 20 1 11.3173 -7.3017 -4.7652 21 6 12.6239 -6.9075 -6.4157 22 7 12.8348 -6.1737 -7.4870 23 14 13.8516 -8.2301 -5.9329 24 1 13.3862 -8.9105 -4.6978 25 1 13.9669 -9.2230 -7.0312 26 1 15.1775 -7.6085 -5.6865 27 6 9.5396 -6.1624 -3.9074 28 6 8.4949 -5.9301 -3.0366 29 6 2.0571 -0.7530 -1.2341 30 1 -0.3634 -1.0273 0.0249 31 1 -0.3633 0.5353 0.8773 32 1 -0.3633 0.4921 -0.9021 33 1 2.3306 -0.0534 2.0251 34 1 1.3159 -1.4664 1.5964 35 1 3.5347 -2.3668 1.3410 36 1 4.1718 -0.8274 0.6738 37 1 4.4337 -1.4250 -2.0667 38 1 6.1003 -5.5267 -1.9333 39 1 6.7211 -3.7273 -4.8985 40 1 8.5896 -4.1338 -6.4454 41 1 13.6280 -6.3190 -8.0260 42 1 10.3291 -6.8464 -3.6331 43 1 8.4668 -6.4319 -2.0807 44 1 2.6860 -0.0942 -1.8330 45 1 1.2233 -1.1191 -1.8333 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353368470.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:31 Heat of formation + Delta-G solvation = -101.015008 kcal Electronic energy + Delta-G solvation = -26999.761003 eV Core-core repulsion = 22981.664319 eV Total energy + Delta-G solvation = -4018.096684 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 5.45 seconds Orbital eigenvalues (eV) -42.11598 -40.91349 -40.11594 -39.00125 -38.21627 -35.86725 -34.98887 -34.16002 -31.93441 -31.47060 -30.00664 -29.36076 -27.46315 -26.35315 -25.13513 -23.96062 -22.90319 -21.74283 -21.50452 -20.72665 -19.98195 -19.63591 -18.98426 -18.20334 -17.64190 -17.06195 -17.00577 -16.38519 -16.10888 -15.88477 -15.67925 -15.53073 -15.34411 -15.14325 -14.73177 -14.57294 -14.32935 -14.18675 -14.11890 -13.62348 -13.38507 -13.30988 -13.05828 -12.95199 -12.82249 -12.72830 -12.42579 -12.33977 -12.07551 -11.85758 -11.68935 -11.59510 -11.46541 -11.32874 -11.12412 -10.76570 -10.60618 -10.27224 -9.89375 -8.69341 -8.46459 -6.13493 0.03208 0.49403 0.70638 1.23051 1.37993 1.45755 1.56181 2.05354 2.18643 2.55564 2.79773 3.14354 3.31234 3.47724 3.54685 3.65069 3.89115 4.01334 4.07915 4.32432 4.37480 4.44391 4.45677 4.49496 4.53081 4.64523 4.64555 4.72072 4.84691 4.96257 5.01951 5.03138 5.11293 5.13252 5.14820 5.22508 5.32529 5.34104 5.35703 5.38679 5.46350 5.56435 5.62817 5.88528 6.01541 6.08935 6.30388 6.69287 6.87459 6.98136 7.77111 8.76718 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.041785 B = 0.001780 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.939278 B =15728.511766 C =16092.151388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.082 0.918 4 C -0.115 4.115 5 C -0.136 4.136 6 C 0.133 3.867 7 H 0.090 0.910 8 N -0.681 5.681 9 C 0.520 3.480 10 O -0.537 6.537 11 C 0.499 3.501 12 O -0.529 6.529 13 N -0.620 5.620 14 C 0.052 3.948 15 C -0.066 4.066 16 C -0.185 4.185 17 C 0.113 3.887 18 O -0.227 6.227 19 C -0.412 4.412 20 H 0.107 0.893 21 C -0.023 4.023 22 N -0.920 5.920 23 Si 1.020 2.980 24 H -0.248 1.248 25 H -0.270 1.270 26 H -0.271 1.271 27 C -0.219 4.219 28 C -0.074 4.074 29 C -0.124 4.124 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.419 0.581 38 H 0.428 0.572 39 H 0.136 0.864 40 H 0.119 0.881 41 H 0.273 0.727 42 H 0.134 0.866 43 H 0.156 0.844 44 H 0.080 0.920 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.158 9.415 17.961 30.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.100 0.900 4 C -0.153 4.153 5 C -0.175 4.175 6 C 0.030 3.970 7 H 0.108 0.892 8 N -0.334 5.334 9 C 0.300 3.700 10 O -0.415 6.415 11 C 0.282 3.718 12 O -0.405 6.405 13 N -0.267 5.267 14 C -0.041 4.041 15 C -0.086 4.086 16 C -0.205 4.205 17 C 0.062 3.938 18 O -0.133 6.133 19 C -0.488 4.488 20 H 0.124 0.876 21 C -0.221 4.221 22 N -0.557 5.557 23 Si 0.839 3.161 24 H -0.171 1.171 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.239 4.239 28 C -0.094 4.094 29 C -0.162 4.162 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.257 0.743 38 H 0.267 0.733 39 H 0.154 0.846 40 H 0.137 0.863 41 H 0.082 0.918 42 H 0.151 0.849 43 H 0.174 0.826 44 H 0.099 0.901 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -23.033 9.557 17.598 30.521 hybrid contribution 0.932 -0.480 -0.310 1.093 sum -22.100 9.077 17.288 29.491 Atomic orbital electron populations 1.21898 0.94197 1.02021 1.02191 1.21696 0.96319 0.99613 0.93461 0.90007 1.22399 0.96157 0.99088 0.97626 1.22894 0.99207 1.00339 0.95030 1.22177 0.85102 0.99833 0.89900 0.89228 1.45899 1.30122 1.10863 1.46495 1.19721 0.83976 0.84239 0.82096 1.90761 1.63859 1.42616 1.44214 1.20452 0.85125 0.83074 0.83197 1.90789 1.63343 1.42131 1.44233 1.42830 1.31894 1.12870 1.39153 1.17342 0.91698 1.04129 0.90972 1.20720 0.97514 0.98895 0.91502 1.20244 0.95123 1.03242 1.01914 1.19917 0.89101 0.94481 0.90323 1.83963 1.32943 1.53139 1.43288 1.21907 1.01719 1.11749 1.13447 0.87580 1.26607 0.99099 1.01135 0.95224 1.70193 1.28443 1.40880 1.16233 0.84512 0.76471 0.76062 0.79061 1.17115 1.19523 1.19567 1.21124 1.01934 1.06111 0.94719 1.20835 0.90981 0.97928 0.99622 1.22526 0.99623 0.95545 0.98534 0.92628 0.92079 0.92283 0.90412 0.90911 0.91970 0.90842 0.74308 0.73256 0.84618 0.86316 0.91840 0.84863 0.82598 0.90139 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 8.85 71.98 0.64 -0.36 16 2 C -0.09 -0.72 3.50 -10.07 -0.04 -0.75 16 3 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 4 C -0.11 -1.02 6.36 31.67 0.20 -0.81 16 5 C -0.14 -1.72 6.58 31.89 0.21 -1.51 16 6 C 0.13 1.83 3.22 46.07 0.15 1.97 16 7 H 0.09 1.45 7.56 -2.39 -0.02 1.43 16 8 N -0.68 -11.54 5.15 -438.92 -2.26 -13.80 16 9 C 0.52 11.71 7.88 87.23 0.69 12.40 16 10 O -0.54 -13.77 16.13 -3.28 -0.05 -13.82 16 11 C 0.50 13.30 7.62 87.23 0.66 13.96 16 12 O -0.53 -16.55 14.19 -3.34 -0.05 -16.60 16 13 N -0.62 -16.42 5.32 -304.74 -1.62 -18.04 16 14 C 0.05 1.72 6.27 38.25 0.24 1.96 16 15 C -0.07 -2.48 8.64 22.39 0.19 -2.29 16 16 C -0.19 -8.14 9.98 22.37 0.22 -7.92 16 17 C 0.11 5.56 6.65 22.60 0.15 5.71 16 18 O -0.23 -13.49 9.75 -22.60 -0.22 -13.71 16 19 C -0.41 -23.46 9.44 67.92 0.64 -22.82 16 20 H 0.11 5.44 5.29 -2.91 -0.02 5.43 16 21 C -0.02 -1.29 5.49 84.83 0.47 -0.82 16 22 N -0.92 -55.99 13.67 21.61 0.30 -55.69 16 23 Si 1.02 42.06 29.55 68.60 2.03 44.09 16 24 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 25 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 26 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 27 C -0.22 -9.16 9.12 22.37 0.20 -8.96 16 28 C -0.07 -2.46 9.96 22.39 0.22 -2.23 16 29 C -0.12 -1.16 6.19 31.32 0.19 -0.96 16 30 H 0.05 0.41 8.12 -2.39 -0.02 0.39 16 31 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.63 7.84 -2.39 -0.02 0.61 16 35 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.42 6.28 7.84 -92.70 -0.73 5.55 16 38 H 0.43 9.20 8.29 -92.71 -0.77 8.43 16 39 H 0.14 4.75 6.45 -2.91 -0.02 4.73 16 40 H 0.12 5.16 8.06 -2.91 -0.02 5.14 16 41 H 0.27 15.18 8.31 -92.71 -0.77 14.40 16 42 H 0.13 5.51 5.71 -2.91 -0.02 5.49 16 43 H 0.16 3.89 8.06 -2.91 -0.02 3.86 16 44 H 0.08 0.67 7.73 -2.39 -0.02 0.65 16 45 H 0.08 0.71 7.67 -2.39 -0.02 0.69 16 Total: -1.00 -71.99 376.62 2.72 -69.28 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: -0.45 Total: 31.73 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: 5.05 Total: -13.42 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -3.59 Total: -87.54 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -0.32 Total: -44.13 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -71.99 2.72 -69.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353368470.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.736 kcal (2) G-P(sol) polarization free energy of solvation -71.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.45 seconds