Wall clock time and date at job start Tue Mar 31 2020 17:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.43175 * 2 1 4 4 C 1.54893 * 110.48868 * 237.32306 * 2 1 3 5 5 C 1.54893 * 102.74451 * 203.37828 * 4 2 1 6 6 C 1.54262 * 104.20010 * 37.93844 * 5 4 2 7 7 H 1.09005 * 110.07034 * 95.69418 * 6 5 4 8 8 N 1.46497 * 110.03654 * 217.10572 * 6 5 4 9 9 C 1.34777 * 119.99618 * 272.16671 * 8 6 5 10 10 O 1.21364 * 120.00181 * 359.97438 * 9 8 6 11 11 C 1.49324 * 119.99498 * 179.97438 * 9 8 6 12 12 O 1.21387 * 120.00278 * 0.02562 * 11 9 8 13 13 N 1.34777 * 119.99498 * 180.02562 * 11 9 8 14 14 C 1.39742 * 119.99606 * 174.55708 * 13 11 9 15 15 C 1.39000 * 120.00714 * 325.01034 * 14 13 11 16 16 C 1.37968 * 119.99338 * 180.25894 * 15 14 13 17 17 C 1.38939 * 120.00652 * 0.02562 * 16 15 14 18 18 O 1.35752 * 119.99036 * 180.02562 * 17 16 15 19 19 C 1.34813 * 117.00037 * 185.57750 * 18 17 16 20 20 H 1.08001 * 119.99513 * 5.36665 * 19 18 17 21 21 C 1.38652 * 120.00076 * 185.35581 * 19 18 17 22 22 N 1.31556 * 119.99605 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00018 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47143 * 89.99503 * 23 21 19 25 25 H 1.48503 * 109.46690 * 209.99780 * 23 21 19 26 26 H 1.48497 * 109.46951 * 329.99347 * 23 21 19 27 27 C 1.38932 * 120.01553 * 359.97438 * 17 16 15 28 28 C 1.37969 * 120.00805 * 359.97438 * 27 17 16 29 29 C 1.53881 * 106.59791 * 336.39120 * 6 5 4 30 30 H 1.08993 * 109.47586 * 297.45337 * 1 2 3 31 31 H 1.09000 * 109.47046 * 57.45718 * 1 2 3 32 32 H 1.09003 * 109.46653 * 177.44922 * 1 2 3 33 33 H 1.08998 * 110.75450 * 321.68792 * 4 2 1 34 34 H 1.08990 * 110.75749 * 84.88012 * 4 2 1 35 35 H 1.09000 * 110.48774 * 279.25561 * 5 4 2 36 36 H 1.08998 * 110.48411 * 156.62257 * 5 4 2 37 37 H 0.97000 * 120.00367 * 92.16630 * 8 6 5 38 38 H 0.96996 * 120.00609 * 354.55126 * 13 11 9 39 39 H 1.08003 * 120.00269 * 0.24992 * 15 14 13 40 40 H 1.07994 * 119.99373 * 180.02562 * 16 15 14 41 41 H 0.96994 * 119.99862 * 180.02562 * 22 21 19 42 42 H 1.08004 * 119.99870 * 180.02562 * 27 17 16 43 43 H 1.08003 * 120.00679 * 179.97438 * 28 27 17 44 44 H 1.08994 * 110.03005 * 119.28328 * 29 6 5 45 45 H 1.08997 * 110.02883 * 240.71041 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0721 -0.7834 -1.2213 5 6 3.4908 -1.1987 -0.7585 6 6 3.3166 -1.5395 0.7359 7 1 3.1697 -2.6124 0.8603 8 7 4.4943 -1.1038 1.4906 9 6 5.5531 -1.9273 1.6217 10 8 5.5308 -3.0299 1.1149 11 6 6.7537 -1.4830 2.3904 12 8 6.7758 -0.3804 2.8976 13 7 7.8128 -2.3063 2.5211 14 6 8.9792 -1.8510 3.1415 15 6 9.3812 -0.5300 2.9820 16 6 10.5358 -0.0822 3.5903 17 6 11.2969 -0.9517 4.3617 18 8 12.4326 -0.5106 4.9605 19 6 13.1850 -1.4298 5.5980 20 1 12.9215 -2.4757 5.5429 21 6 14.2973 -1.0324 6.3242 22 7 15.0319 -1.9295 6.9458 23 14 14.7528 0.7767 6.4198 24 1 14.0771 1.3962 7.5882 25 1 16.2242 0.9093 6.5711 26 1 14.3193 1.4627 5.1762 27 6 10.8954 -2.2721 4.5213 28 6 9.7403 -2.7203 3.9142 29 6 2.0699 -0.7773 1.2182 30 1 -0.3634 0.4737 0.9119 31 1 -0.3633 0.5528 -0.8663 32 1 -0.3633 -1.0267 -0.0457 33 1 1.4582 -1.6617 -1.4203 34 1 2.1221 -0.1415 -2.1007 35 1 4.1898 -0.3716 -0.8823 36 1 3.8317 -2.0735 -1.3121 37 1 4.5120 -0.2227 1.8959 38 1 7.7653 -3.2148 2.1846 39 1 8.7899 0.1458 2.3819 40 1 10.8479 0.9442 3.4668 41 1 15.8098 -1.6515 7.4541 42 1 11.4870 -2.9477 5.1214 43 1 9.4285 -3.7469 4.0379 44 1 1.3177 -1.4803 1.5758 45 1 2.3411 -0.0833 2.0137 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353368489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:47 Heat of formation + Delta-G solvation = -77.547191 kcal Electronic energy + Delta-G solvation = -27059.232394 eV Core-core repulsion = 23042.153351 eV Total energy + Delta-G solvation = -4017.079043 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.02207 -39.73944 -38.89961 -38.12616 -36.76551 -34.77754 -33.87543 -32.37918 -30.99716 -30.39759 -29.04572 -28.43466 -25.89041 -25.25940 -24.14982 -22.44998 -21.52977 -20.89902 -20.42560 -20.21640 -18.79154 -17.95136 -17.50767 -17.12102 -16.45399 -16.18154 -15.86989 -15.19438 -15.14729 -14.78711 -14.29812 -14.24345 -14.03098 -13.89112 -13.75238 -13.62361 -13.39335 -12.88138 -12.54712 -12.44330 -12.40787 -12.30759 -12.02673 -11.92144 -11.75735 -11.60096 -11.42222 -11.20923 -11.04809 -10.99931 -10.98409 -10.78818 -10.21549 -9.86846 -9.66337 -9.51366 -9.37306 -8.83355 -8.37924 -7.15578 -6.46507 -4.12086 1.18511 2.02241 2.08193 2.30120 3.14239 3.20761 3.24582 3.38641 3.54938 4.03578 4.08636 4.20491 4.32238 4.36708 4.43823 4.82424 4.84246 4.86343 4.94479 5.00876 5.04378 5.10193 5.14292 5.26900 5.38465 5.42922 5.47552 5.58604 5.59426 5.68137 5.71361 5.76842 5.93789 5.93872 6.02151 6.05048 6.08295 6.54413 6.65928 6.68725 6.89700 6.99051 7.15415 7.38129 7.48269 7.65764 7.72122 7.94375 8.02927 8.88383 9.49795 10.60762 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.034830 B = 0.001855 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.714901 B =15093.730781 C =15536.299865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.077 0.923 4 C -0.119 4.119 5 C -0.137 4.137 6 C 0.138 3.862 7 H 0.096 0.904 8 N -0.697 5.697 9 C 0.512 3.488 10 O -0.521 6.521 11 C 0.496 3.504 12 O -0.509 6.509 13 N -0.626 5.626 14 C 0.035 3.965 15 C -0.066 4.066 16 C -0.177 4.177 17 C 0.155 3.845 18 O -0.213 6.213 19 C -0.390 4.390 20 H 0.107 0.893 21 C 0.064 3.936 22 N -0.876 5.876 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.206 4.206 28 C -0.083 4.083 29 C -0.129 4.129 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.413 0.587 38 H 0.415 0.585 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.280 0.720 42 H 0.140 0.860 43 H 0.117 0.883 44 H 0.079 0.921 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.176 1.800 -14.039 29.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.096 0.904 4 C -0.157 4.157 5 C -0.175 4.175 6 C 0.034 3.966 7 H 0.114 0.886 8 N -0.350 5.350 9 C 0.293 3.707 10 O -0.396 6.396 11 C 0.278 3.722 12 O -0.385 6.385 13 N -0.272 5.272 14 C -0.057 4.057 15 C -0.086 4.086 16 C -0.197 4.197 17 C 0.103 3.897 18 O -0.117 6.117 19 C -0.466 4.466 20 H 0.124 0.876 21 C -0.140 4.140 22 N -0.514 5.514 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.207 1.207 26 H -0.183 1.183 27 C -0.225 4.225 28 C -0.103 4.103 29 C -0.167 4.167 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.250 0.750 38 H 0.252 0.748 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.090 0.910 42 H 0.157 0.843 43 H 0.135 0.865 44 H 0.097 0.903 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -25.884 1.965 -13.893 29.442 hybrid contribution 0.315 0.453 0.281 0.619 sum -25.569 2.419 -13.612 29.067 Atomic orbital electron populations 1.21810 0.94684 1.01958 1.01811 1.21983 0.95765 0.99432 0.94472 0.90436 1.22558 0.95592 0.99982 0.97552 1.22807 0.97656 1.02126 0.94927 1.21792 0.83605 1.00368 0.90844 0.88621 1.45983 1.15560 1.19539 1.53954 1.20170 0.84326 0.85179 0.81065 1.90759 1.81099 1.20407 1.47373 1.20061 0.84047 0.86024 0.82103 1.90788 1.81005 1.20528 1.46130 1.42906 1.11598 1.16364 1.56318 1.17271 0.89278 0.95136 1.04049 1.20556 0.95056 0.94104 0.98856 1.20091 0.96687 0.99793 1.03127 1.19185 0.86360 0.92187 0.92005 1.83590 1.29143 1.37730 1.61245 1.20774 1.06747 0.89715 1.29328 0.87550 1.24481 0.94992 0.99914 0.94583 1.69642 1.16847 1.34094 1.30770 0.86175 0.77449 0.83438 0.79840 1.19843 1.20731 1.18263 1.21115 0.98890 0.96748 1.05789 1.20573 0.95243 0.98610 0.95899 1.22548 0.96294 0.99469 0.98364 0.92570 0.92546 0.92484 0.91072 0.91190 0.90860 0.90772 0.75033 0.74847 0.85746 0.85919 0.90961 0.84258 0.86539 0.90279 0.90689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.12 37.16 0.34 -0.28 16 2 C -0.10 -0.49 3.46 -88.96 -0.31 -0.79 16 3 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 4 C -0.12 -0.63 6.33 -24.73 -0.16 -0.78 16 5 C -0.14 -0.96 6.53 -25.07 -0.16 -1.12 16 6 C 0.14 1.04 3.25 -66.81 -0.22 0.82 16 7 H 0.10 0.82 7.56 -51.93 -0.39 0.43 16 8 N -0.70 -6.38 5.03 -53.19 -0.27 -6.65 16 9 C 0.51 6.14 7.88 -11.64 -0.09 6.05 16 10 O -0.52 -7.09 16.14 5.48 0.09 -7.00 16 11 C 0.50 6.94 7.61 -11.64 -0.09 6.86 16 12 O -0.51 -8.16 14.27 5.46 0.08 -8.09 16 13 N -0.63 -8.88 5.32 -10.26 -0.05 -8.93 16 14 C 0.03 0.60 6.25 -83.69 -0.52 0.07 16 15 C -0.07 -1.19 8.65 -39.40 -0.34 -1.53 16 16 C -0.18 -3.54 9.98 -39.42 -0.39 -3.93 16 17 C 0.16 3.52 6.65 -39.06 -0.26 3.26 16 18 O -0.21 -5.50 8.58 0.09 0.00 -5.50 16 19 C -0.39 -10.76 9.90 30.89 0.31 -10.45 16 20 H 0.11 2.97 5.52 -52.49 -0.29 2.68 16 21 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 22 N -0.88 -24.87 13.96 55.48 0.77 -24.10 16 23 Si 0.91 21.39 28.62 -169.99 -4.86 16.52 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 27 C -0.21 -4.28 9.13 -39.42 -0.36 -4.64 16 28 C -0.08 -1.46 9.96 -39.40 -0.39 -1.85 16 29 C -0.13 -0.71 6.14 -25.61 -0.16 -0.87 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.23 8.12 -51.93 -0.42 -0.19 16 33 H 0.07 0.35 8.04 -51.93 -0.42 -0.07 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.55 8.05 -51.93 -0.42 0.13 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.41 3.40 7.79 -40.82 -0.32 3.08 16 38 H 0.41 5.01 8.30 -40.82 -0.34 4.67 16 39 H 0.12 2.13 6.53 -52.48 -0.34 1.78 16 40 H 0.12 2.28 8.06 -52.49 -0.42 1.85 16 41 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.14 3.01 5.70 -52.48 -0.30 2.71 16 43 H 0.12 1.70 8.06 -52.48 -0.42 1.27 16 44 H 0.08 0.40 7.84 -51.93 -0.41 -0.01 16 45 H 0.07 0.40 7.62 -51.93 -0.40 0.01 16 LS Contribution 375.75 15.07 5.66 5.66 Total: -1.00 -30.64 375.75 -7.62 -38.26 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -6.13 Total: 7.35 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -2.90 Total: -7.53 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.45 Total: -39.68 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: 0.17 Total: -20.59 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.86 Total: 16.52 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.64 -7.62 -38.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353368489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.284 kcal (2) G-P(sol) polarization free energy of solvation -30.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds