Wall clock time and date at job start Tue Mar 31 2020 17:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.43175 * 2 1 4 4 C 1.54893 * 110.48868 * 237.32306 * 2 1 3 5 5 C 1.54893 * 102.74451 * 203.37828 * 4 2 1 6 6 C 1.54262 * 104.20010 * 37.93844 * 5 4 2 7 7 H 1.09005 * 110.07034 * 95.69418 * 6 5 4 8 8 N 1.46497 * 110.03654 * 217.10572 * 6 5 4 9 9 C 1.34777 * 119.99618 * 272.16671 * 8 6 5 10 10 O 1.21364 * 120.00181 * 359.97438 * 9 8 6 11 11 C 1.49324 * 119.99498 * 179.97438 * 9 8 6 12 12 O 1.21387 * 120.00278 * 0.02562 * 11 9 8 13 13 N 1.34777 * 119.99498 * 180.02562 * 11 9 8 14 14 C 1.39742 * 119.99606 * 174.55708 * 13 11 9 15 15 C 1.39000 * 120.00714 * 325.01034 * 14 13 11 16 16 C 1.37968 * 119.99338 * 180.25894 * 15 14 13 17 17 C 1.38939 * 120.00652 * 0.02562 * 16 15 14 18 18 O 1.35752 * 119.99036 * 180.02562 * 17 16 15 19 19 C 1.34813 * 117.00037 * 185.57750 * 18 17 16 20 20 H 1.08001 * 119.99513 * 5.36665 * 19 18 17 21 21 C 1.38652 * 120.00076 * 185.35581 * 19 18 17 22 22 N 1.31556 * 119.99605 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00018 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47143 * 89.99503 * 23 21 19 25 25 H 1.48503 * 109.46690 * 209.99780 * 23 21 19 26 26 H 1.48497 * 109.46951 * 329.99347 * 23 21 19 27 27 C 1.38932 * 120.01553 * 359.97438 * 17 16 15 28 28 C 1.37969 * 120.00805 * 359.97438 * 27 17 16 29 29 C 1.53881 * 106.59791 * 336.39120 * 6 5 4 30 30 H 1.08993 * 109.47586 * 297.45337 * 1 2 3 31 31 H 1.09000 * 109.47046 * 57.45718 * 1 2 3 32 32 H 1.09003 * 109.46653 * 177.44922 * 1 2 3 33 33 H 1.08998 * 110.75450 * 321.68792 * 4 2 1 34 34 H 1.08990 * 110.75749 * 84.88012 * 4 2 1 35 35 H 1.09000 * 110.48774 * 279.25561 * 5 4 2 36 36 H 1.08998 * 110.48411 * 156.62257 * 5 4 2 37 37 H 0.97000 * 120.00367 * 92.16630 * 8 6 5 38 38 H 0.96996 * 120.00609 * 354.55126 * 13 11 9 39 39 H 1.08003 * 120.00269 * 0.24992 * 15 14 13 40 40 H 1.07994 * 119.99373 * 180.02562 * 16 15 14 41 41 H 0.96994 * 119.99862 * 180.02562 * 22 21 19 42 42 H 1.08004 * 119.99870 * 180.02562 * 27 17 16 43 43 H 1.08003 * 120.00679 * 179.97438 * 28 27 17 44 44 H 1.08994 * 110.03005 * 119.28328 * 29 6 5 45 45 H 1.08997 * 110.02883 * 240.71041 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0721 -0.7834 -1.2213 5 6 3.4908 -1.1987 -0.7585 6 6 3.3166 -1.5395 0.7359 7 1 3.1697 -2.6124 0.8603 8 7 4.4943 -1.1038 1.4906 9 6 5.5531 -1.9273 1.6217 10 8 5.5308 -3.0299 1.1149 11 6 6.7537 -1.4830 2.3904 12 8 6.7758 -0.3804 2.8976 13 7 7.8128 -2.3063 2.5211 14 6 8.9792 -1.8510 3.1415 15 6 9.3812 -0.5300 2.9820 16 6 10.5358 -0.0822 3.5903 17 6 11.2969 -0.9517 4.3617 18 8 12.4326 -0.5106 4.9605 19 6 13.1850 -1.4298 5.5980 20 1 12.9215 -2.4757 5.5429 21 6 14.2973 -1.0324 6.3242 22 7 15.0319 -1.9295 6.9458 23 14 14.7528 0.7767 6.4198 24 1 14.0771 1.3962 7.5882 25 1 16.2242 0.9093 6.5711 26 1 14.3193 1.4627 5.1762 27 6 10.8954 -2.2721 4.5213 28 6 9.7403 -2.7203 3.9142 29 6 2.0699 -0.7773 1.2182 30 1 -0.3634 0.4737 0.9119 31 1 -0.3633 0.5528 -0.8663 32 1 -0.3633 -1.0267 -0.0457 33 1 1.4582 -1.6617 -1.4203 34 1 2.1221 -0.1415 -2.1007 35 1 4.1898 -0.3716 -0.8823 36 1 3.8317 -2.0735 -1.3121 37 1 4.5120 -0.2227 1.8959 38 1 7.7653 -3.2148 2.1846 39 1 8.7899 0.1458 2.3819 40 1 10.8479 0.9442 3.4668 41 1 15.8098 -1.6515 7.4541 42 1 11.4870 -2.9477 5.1214 43 1 9.4285 -3.7469 4.0379 44 1 1.3177 -1.4803 1.5758 45 1 2.3411 -0.0833 2.0137 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353368489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:44 Heat of formation + Delta-G solvation = -97.125522 kcal Electronic energy + Delta-G solvation = -27060.081375 eV Core-core repulsion = 23042.153351 eV Total energy + Delta-G solvation = -4017.928023 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 3.99 seconds Orbital eigenvalues (eV) -42.13501 -40.99696 -40.18757 -38.98394 -38.29665 -35.86461 -34.96468 -34.35951 -31.97388 -31.51663 -30.15213 -29.40713 -27.42110 -26.28606 -25.10662 -24.02132 -22.84810 -21.63109 -21.44723 -20.86083 -20.00009 -19.63692 -19.17768 -18.26286 -17.69514 -17.09374 -16.90150 -16.58552 -16.06043 -15.75363 -15.69525 -15.61832 -15.51404 -15.07959 -14.88011 -14.49828 -14.45637 -14.20240 -14.06128 -13.80600 -13.55849 -13.36510 -13.06150 -12.97898 -12.81326 -12.72789 -12.50295 -12.39824 -11.98600 -11.89877 -11.67969 -11.51576 -11.49116 -11.40414 -11.19028 -10.81048 -10.68173 -10.29511 -9.92753 -8.77353 -8.49530 -6.20889 0.01308 0.45640 0.66025 1.22548 1.33463 1.36933 1.53509 2.04548 2.28989 2.54895 2.73213 3.06160 3.08183 3.31226 3.55642 3.61247 3.89639 3.98353 4.04260 4.35653 4.37707 4.41103 4.45319 4.49580 4.52731 4.60864 4.67110 4.71757 4.79933 4.97756 4.98712 5.04346 5.10441 5.12643 5.14322 5.25392 5.31005 5.37422 5.37781 5.41040 5.48465 5.55870 5.72868 5.78980 5.93991 6.13302 6.29154 6.68306 6.84697 6.86513 7.57265 8.61529 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.034830 B = 0.001855 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.714901 B =15093.730781 C =15536.299865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.078 0.922 4 C -0.114 4.114 5 C -0.136 4.136 6 C 0.135 3.865 7 H 0.087 0.913 8 N -0.681 5.681 9 C 0.518 3.482 10 O -0.538 6.538 11 C 0.501 3.499 12 O -0.526 6.526 13 N -0.623 5.623 14 C 0.061 3.939 15 C -0.068 4.068 16 C -0.172 4.172 17 C 0.119 3.881 18 O -0.240 6.240 19 C -0.399 4.399 20 H 0.086 0.914 21 C 0.012 3.988 22 N -0.919 5.919 23 Si 0.967 3.033 24 H -0.268 1.268 25 H -0.268 1.268 26 H -0.262 1.262 27 C -0.213 4.213 28 C -0.079 4.079 29 C -0.124 4.124 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.419 0.581 38 H 0.428 0.572 39 H 0.141 0.859 40 H 0.135 0.865 41 H 0.285 0.715 42 H 0.123 0.877 43 H 0.151 0.849 44 H 0.087 0.913 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.128 2.713 -15.492 33.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.097 0.903 4 C -0.152 4.152 5 C -0.175 4.175 6 C 0.031 3.969 7 H 0.105 0.895 8 N -0.334 5.334 9 C 0.298 3.702 10 O -0.415 6.415 11 C 0.284 3.716 12 O -0.402 6.402 13 N -0.270 5.270 14 C -0.032 4.032 15 C -0.088 4.088 16 C -0.192 4.192 17 C 0.069 3.931 18 O -0.147 6.147 19 C -0.475 4.475 20 H 0.104 0.896 21 C -0.187 4.187 22 N -0.560 5.560 23 Si 0.790 3.210 24 H -0.193 1.193 25 H -0.193 1.193 26 H -0.186 1.186 27 C -0.233 4.233 28 C -0.099 4.099 29 C -0.162 4.162 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.257 0.743 38 H 0.267 0.733 39 H 0.158 0.842 40 H 0.152 0.848 41 H 0.094 0.906 42 H 0.141 0.859 43 H 0.169 0.831 44 H 0.105 0.895 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -28.911 2.876 -15.383 32.875 hybrid contribution 0.847 0.090 0.524 1.000 sum -28.063 2.967 -14.860 31.893 Atomic orbital electron populations 1.21797 0.93991 1.02218 1.02121 1.21971 0.96289 0.99268 0.93844 0.90328 1.22545 0.94387 1.00346 0.97938 1.22776 0.98740 1.01534 0.94400 1.21965 0.83571 1.00219 0.91105 0.89510 1.46029 1.15087 1.19286 1.53043 1.19746 0.84214 0.85247 0.80985 1.90768 1.81301 1.21117 1.48307 1.20441 0.84387 0.85417 0.81400 1.90788 1.81454 1.21314 1.46672 1.42870 1.10791 1.17206 1.56170 1.17384 0.89404 0.94576 1.01848 1.20767 0.94473 0.94910 0.98656 1.20306 0.96635 1.00106 1.02130 1.19648 0.86584 0.93594 0.93233 1.83535 1.30717 1.37311 1.63154 1.20726 1.07587 0.89430 1.29753 0.89644 1.25245 0.94979 1.03992 0.94461 1.69720 1.17877 1.35861 1.32516 0.85261 0.77789 0.78419 0.79554 1.19284 1.19252 1.18606 1.21145 0.99933 0.96058 1.06164 1.20815 0.93858 1.00379 0.94802 1.22540 0.95345 0.99560 0.98744 0.92344 0.92199 0.92269 0.90587 0.90582 0.91326 0.91738 0.74298 0.73284 0.84157 0.84759 0.90564 0.85908 0.83119 0.89483 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.12 71.98 0.66 -0.21 16 2 C -0.10 -0.71 3.46 -9.72 -0.03 -0.74 16 3 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 4 C -0.11 -0.95 6.33 31.89 0.20 -0.75 16 5 C -0.14 -1.66 6.53 31.67 0.21 -1.46 16 6 C 0.13 1.74 3.25 45.72 0.15 1.89 16 7 H 0.09 1.33 7.56 -2.38 -0.02 1.31 16 8 N -0.68 -10.90 5.03 -440.55 -2.22 -13.12 16 9 C 0.52 11.21 7.88 87.23 0.69 11.89 16 10 O -0.54 -13.48 16.14 -3.29 -0.05 -13.53 16 11 C 0.50 12.69 7.61 87.23 0.66 13.35 16 12 O -0.53 -15.46 14.27 -3.36 -0.05 -15.51 16 13 N -0.62 -15.88 5.32 -304.73 -1.62 -17.50 16 14 C 0.06 1.94 6.25 38.25 0.24 2.18 16 15 C -0.07 -2.33 8.65 22.39 0.19 -2.14 16 16 C -0.17 -6.73 9.98 22.37 0.22 -6.51 16 17 C 0.12 5.48 6.65 22.60 0.15 5.63 16 18 O -0.24 -12.80 8.58 -22.59 -0.19 -13.00 16 19 C -0.40 -22.97 9.90 67.92 0.67 -22.30 16 20 H 0.09 5.09 5.52 -2.91 -0.02 5.08 16 21 C 0.01 0.69 5.49 84.83 0.47 1.16 16 22 N -0.92 -54.06 13.96 21.61 0.30 -53.75 16 23 Si 0.97 44.95 28.62 68.60 1.96 46.91 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 H -0.26 -12.13 7.11 99.48 0.71 -11.43 16 27 C -0.21 -8.99 9.13 22.37 0.20 -8.78 16 28 C -0.08 -2.62 9.96 22.39 0.22 -2.40 16 29 C -0.12 -1.06 6.14 31.32 0.19 -0.87 16 30 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.06 0.34 8.12 -2.39 -0.02 0.32 16 33 H 0.08 0.58 8.04 -2.39 -0.02 0.56 16 34 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.07 0.91 8.05 -2.39 -0.02 0.89 16 36 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.42 5.83 7.79 -92.71 -0.72 5.11 16 38 H 0.43 9.03 8.30 -92.71 -0.77 8.26 16 39 H 0.14 4.40 6.53 -2.91 -0.02 4.38 16 40 H 0.13 4.85 8.06 -2.91 -0.02 4.83 16 41 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 42 H 0.12 5.58 5.70 -2.91 -0.02 5.56 16 43 H 0.15 3.97 8.06 -2.91 -0.02 3.94 16 44 H 0.09 0.64 7.84 -2.39 -0.02 0.62 16 45 H 0.08 0.63 7.62 -2.39 -0.02 0.61 16 Total: -1.00 -67.29 375.75 2.78 -64.51 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -0.45 Total: 25.03 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 5.09 Total: -10.05 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -3.53 Total: -84.37 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -0.29 Total: -42.04 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.96 Total: 46.91 kcal Total: -67.29 2.78 -64.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353368489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.615 kcal (2) G-P(sol) polarization free energy of solvation -67.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.99 seconds