Wall clock time and date at job start Tue Mar 31 2020 17:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 110.43066 * 2 1 4 4 C 1.54882 * 110.48663 * 122.54532 * 2 1 3 5 5 C 1.54892 * 102.91627 * 156.52927 * 4 2 1 6 6 C 1.54470 * 104.09881 * 322.30127 * 5 4 2 7 7 H 1.08997 * 110.11963 * 142.72319 * 6 5 4 8 8 N 1.46500 * 109.89386 * 264.07963 * 6 5 4 9 9 C 1.34779 * 119.99914 * 272.19157 * 8 6 5 10 10 O 1.21360 * 120.00087 * 359.97438 * 9 8 6 11 11 C 1.49315 * 119.99757 * 180.02562 * 9 8 6 12 12 O 1.21392 * 120.00344 * 0.02562 * 11 9 8 13 13 N 1.34779 * 119.99757 * 179.97438 * 11 9 8 14 14 C 1.39741 * 120.00016 * 175.50073 * 13 11 9 15 15 C 1.39000 * 120.00443 * 214.86428 * 14 13 11 16 16 C 1.37973 * 119.98956 * 179.76249 * 15 14 13 17 17 C 1.38937 * 120.00452 * 0.51166 * 16 15 14 18 18 O 1.35759 * 119.98891 * 179.72238 * 17 16 15 19 19 C 1.34805 * 116.99978 * 185.36852 * 18 17 16 20 20 H 1.07991 * 119.99966 * 354.96555 * 19 18 17 21 21 C 1.38656 * 119.99788 * 174.96036 * 19 18 17 22 22 N 1.31551 * 120.00072 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99560 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47345 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47142 * 120.00255 * 23 21 19 26 26 H 1.48498 * 109.47296 * 240.00359 * 23 21 19 27 27 C 1.38932 * 120.01913 * 359.74078 * 17 16 15 28 28 C 1.37972 * 120.00373 * 0.02562 * 27 17 16 29 29 C 1.53870 * 106.68507 * 23.34106 * 6 5 4 30 30 H 1.09001 * 109.47395 * 298.90887 * 1 2 3 31 31 H 1.09005 * 109.47655 * 58.90768 * 1 2 3 32 32 H 1.09001 * 109.47300 * 178.90939 * 1 2 3 33 33 H 1.09000 * 110.75544 * 274.93476 * 4 2 1 34 34 H 1.08998 * 110.75796 * 38.11886 * 4 2 1 35 35 H 1.08998 * 110.48468 * 80.82299 * 5 4 2 36 36 H 1.08996 * 110.49163 * 203.46973 * 5 4 2 37 37 H 0.96997 * 119.99927 * 92.19479 * 8 6 5 38 38 H 0.97001 * 120.00054 * 355.49458 * 13 11 9 39 39 H 1.07998 * 120.00081 * 0.02562 * 15 14 13 40 40 H 1.08001 * 119.99432 * 180.22870 * 16 15 14 41 41 H 0.97001 * 120.00334 * 179.97438 * 22 21 19 42 42 H 1.07999 * 119.99815 * 180.02562 * 27 17 16 43 43 H 1.07996 * 119.99927 * 179.97438 * 28 27 17 44 44 H 1.09001 * 110.03514 * 240.87653 * 29 6 5 45 45 H 1.09002 * 110.03579 * 119.44611 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0720 -0.7805 1.2230 5 6 3.4905 -1.2011 0.7644 6 6 3.3165 -1.5413 -0.7323 7 1 4.1927 -1.2185 -1.2945 8 7 3.1190 -2.9837 -0.8960 9 6 4.1840 -3.7991 -1.0278 10 8 5.3067 -3.3384 -1.0113 11 6 3.9826 -5.2691 -1.1952 12 8 2.8597 -5.7298 -1.2131 13 7 5.0477 -6.0844 -1.3275 14 6 4.8647 -7.4684 -1.3897 15 6 5.8054 -8.3200 -0.8224 16 6 5.6220 -9.6863 -0.8797 17 6 4.5025 -10.2111 -1.5136 18 8 4.3252 -11.5557 -1.5747 19 6 3.2794 -12.0028 -2.2982 20 1 2.5811 -11.3005 -2.7290 21 6 3.1002 -13.3644 -2.4894 22 7 3.9505 -14.2198 -1.9643 23 14 1.6514 -13.9838 -3.4926 24 1 0.8498 -12.8286 -3.9701 25 1 2.1507 -14.7551 -4.6592 26 1 0.8020 -14.8602 -2.6466 27 6 3.5647 -9.3602 -2.0852 28 6 3.7451 -7.9937 -2.0241 29 6 2.0699 -0.7803 -1.2164 30 1 -0.3634 0.4968 0.8996 31 1 -0.3634 0.5307 -0.8800 32 1 -0.3634 -1.0275 -0.0196 33 1 2.1251 -0.1357 2.1002 34 1 1.4561 -1.6565 1.4262 35 1 4.1916 -0.3757 0.8874 36 1 3.8278 -2.0755 1.3209 37 1 2.2217 -3.3518 -0.9096 38 1 5.9412 -5.7105 -1.3796 39 1 6.6776 -7.9122 -0.3332 40 1 6.3510 -10.3480 -0.4357 41 1 3.8250 -15.1724 -2.0978 42 1 2.6944 -9.7685 -2.5775 43 1 3.0163 -7.3324 -2.4688 44 1 1.3175 -1.4841 -1.5724 45 1 2.3411 -0.0881 -2.0136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353368490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:58 Heat of formation + Delta-G solvation = -77.966676 kcal Electronic energy + Delta-G solvation = -27224.138660 eV Core-core repulsion = 23207.041426 eV Total energy + Delta-G solvation = -4017.097233 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 6.60 seconds Orbital eigenvalues (eV) -40.97966 -39.68299 -38.75340 -38.04012 -36.61658 -34.64408 -33.77399 -32.22720 -30.94127 -30.27388 -29.03176 -28.27492 -25.79951 -25.26931 -24.26178 -22.40247 -21.59026 -20.64095 -20.55365 -19.93020 -18.79338 -17.95450 -17.28187 -17.05367 -16.55944 -15.94755 -15.80439 -15.69856 -14.63125 -14.54214 -14.49089 -14.15416 -13.90881 -13.70656 -13.63103 -13.59188 -13.39343 -12.96169 -12.78883 -12.62255 -12.14462 -11.93223 -11.79712 -11.75709 -11.61030 -11.47696 -11.36319 -11.23567 -11.07605 -11.00724 -10.93986 -10.75751 -10.44505 -9.79688 -9.63057 -9.47769 -9.22332 -8.75849 -8.26873 -7.01979 -6.48749 -4.05961 1.25728 2.12177 2.17752 2.38456 3.10347 3.13222 3.18870 3.22339 3.61503 3.94607 4.07414 4.10067 4.36923 4.42504 4.54026 4.84287 4.93595 4.99584 5.05655 5.05841 5.09447 5.16175 5.21475 5.35953 5.43203 5.52088 5.62213 5.62501 5.67408 5.68819 5.74216 5.78720 5.98069 6.03462 6.09814 6.12630 6.23752 6.62411 6.72159 6.88345 6.95250 7.04032 7.24128 7.38006 7.44615 7.67742 7.73075 7.96272 8.08804 8.96915 9.65432 10.68957 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020497 B = 0.002052 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.746947 B =13644.049012 C =14602.734833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 H 0.077 0.923 4 C -0.122 4.122 5 C -0.134 4.134 6 C 0.138 3.862 7 H 0.095 0.905 8 N -0.695 5.695 9 C 0.512 3.488 10 O -0.522 6.522 11 C 0.495 3.505 12 O -0.510 6.510 13 N -0.624 5.624 14 C 0.022 3.978 15 C -0.085 4.085 16 C -0.178 4.178 17 C 0.150 3.850 18 O -0.174 6.174 19 C -0.391 4.391 20 H 0.094 0.906 21 C 0.039 3.961 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.222 4.222 28 C -0.060 4.060 29 C -0.128 4.128 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.412 0.588 38 H 0.414 0.586 39 H 0.118 0.882 40 H 0.124 0.876 41 H 0.270 0.730 42 H 0.132 0.868 43 H 0.125 0.875 44 H 0.077 0.923 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.130 26.906 2.795 27.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 H 0.096 0.904 4 C -0.160 4.160 5 C -0.173 4.173 6 C 0.034 3.966 7 H 0.113 0.887 8 N -0.349 5.349 9 C 0.293 3.707 10 O -0.398 6.398 11 C 0.276 3.724 12 O -0.385 6.385 13 N -0.269 5.269 14 C -0.070 4.070 15 C -0.105 4.105 16 C -0.197 4.197 17 C 0.095 3.905 18 O -0.076 6.076 19 C -0.467 4.467 20 H 0.111 0.889 21 C -0.166 4.166 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.242 4.242 28 C -0.080 4.080 29 C -0.166 4.166 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.249 0.751 38 H 0.250 0.750 39 H 0.136 0.864 40 H 0.142 0.858 41 H 0.080 0.920 42 H 0.150 0.850 43 H 0.143 0.857 44 H 0.095 0.905 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.973 26.481 2.905 26.805 hybrid contribution -0.701 -0.282 -0.502 0.907 sum -3.674 26.199 2.403 26.564 Atomic orbital electron populations 1.21822 0.94653 1.02116 1.01760 1.21982 0.95798 0.99324 0.94432 0.90441 1.22616 0.95925 0.99982 0.97478 1.22823 0.97481 1.01962 0.95036 1.21784 0.99309 0.78718 0.96830 0.88716 1.45969 1.09766 1.07253 1.71910 1.20187 0.85305 0.87631 0.77593 1.90752 1.23275 1.77015 1.48769 1.20051 0.85657 0.87266 0.79433 1.90774 1.23166 1.76376 1.48228 1.42845 1.09903 1.05175 1.68979 1.17244 1.00582 0.80406 1.08801 1.20393 0.98575 0.92396 0.99115 1.20005 0.98593 0.93881 1.07269 1.19443 0.92773 0.85074 0.93173 1.83967 1.46481 1.15342 1.61849 1.21407 1.03007 0.91832 1.30448 0.88858 1.25311 0.98882 0.94788 0.97569 1.70044 1.35121 1.02650 1.41658 0.85629 0.79605 0.79184 0.78936 1.19014 1.20111 1.20105 1.21093 1.02316 0.92596 1.08180 1.20838 0.96202 0.94761 0.96184 1.22565 0.96465 0.99221 0.98368 0.92533 0.92609 0.92391 0.91340 0.91186 0.90485 0.90936 0.75079 0.74992 0.86426 0.85833 0.91990 0.85032 0.85670 0.90472 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.12 37.16 0.34 -0.39 16 2 C -0.10 -0.51 3.46 -88.96 -0.31 -0.82 16 3 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 4 C -0.12 -0.74 6.32 -24.74 -0.16 -0.90 16 5 C -0.13 -0.99 6.55 -24.96 -0.16 -1.15 16 6 C 0.14 1.07 3.25 -66.71 -0.22 0.86 16 7 H 0.09 0.83 7.56 -51.93 -0.39 0.43 16 8 N -0.70 -6.68 5.02 -53.09 -0.27 -6.95 16 9 C 0.51 6.36 7.88 -11.65 -0.09 6.27 16 10 O -0.52 -7.26 16.13 5.49 0.09 -7.18 16 11 C 0.49 7.23 7.73 -11.65 -0.09 7.14 16 12 O -0.51 -8.58 13.91 5.46 0.08 -8.50 16 13 N -0.62 -9.17 5.32 -10.27 -0.05 -9.22 16 14 C 0.02 0.39 6.30 -83.69 -0.53 -0.14 16 15 C -0.08 -1.48 9.96 -39.40 -0.39 -1.87 16 16 C -0.18 -3.65 9.98 -39.42 -0.39 -4.04 16 17 C 0.15 3.58 6.65 -39.07 -0.26 3.32 16 18 O -0.17 -4.88 9.75 0.09 0.00 -4.88 16 19 C -0.39 -10.82 9.48 30.89 0.29 -10.53 16 20 H 0.09 2.41 5.19 -52.49 -0.27 2.13 16 21 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -24.96 13.67 55.48 0.76 -24.20 16 23 Si 0.94 20.41 29.55 -169.99 -5.02 15.39 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 27 C -0.22 -4.91 9.16 -39.42 -0.36 -5.27 16 28 C -0.06 -1.18 8.69 -39.40 -0.34 -1.53 16 29 C -0.13 -0.74 6.14 -25.61 -0.16 -0.90 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.31 8.11 -51.93 -0.42 -0.11 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.46 8.06 -51.93 -0.42 0.05 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.65 8.04 -51.93 -0.42 0.23 16 37 H 0.41 3.66 7.79 -40.82 -0.32 3.34 16 38 H 0.41 5.13 8.30 -40.82 -0.34 4.79 16 39 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 41 H 0.27 7.16 8.31 -40.82 -0.34 6.83 16 42 H 0.13 2.92 5.63 -52.49 -0.30 2.62 16 43 H 0.13 2.39 6.22 -52.49 -0.33 2.06 16 44 H 0.08 0.45 7.29 -51.93 -0.38 0.07 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 376.32 15.07 5.67 5.67 Total: -1.00 -31.83 376.32 -7.77 -39.60 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -6.10 Total: 9.24 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -2.92 Total: -8.97 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.44 Total: -40.36 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: 0.17 Total: -20.56 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.83 -7.77 -39.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353368490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.367 kcal (2) G-P(sol) polarization free energy of solvation -31.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.60 seconds