Wall clock time and date at job start Tue Mar 31 2020 17:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 110.43066 * 2 1 4 4 C 1.54882 * 110.48663 * 122.54532 * 2 1 3 5 5 C 1.54892 * 102.91627 * 156.52927 * 4 2 1 6 6 C 1.54470 * 104.09881 * 322.30127 * 5 4 2 7 7 H 1.08997 * 110.11963 * 142.72319 * 6 5 4 8 8 N 1.46500 * 109.89386 * 264.07963 * 6 5 4 9 9 C 1.34779 * 119.99914 * 272.19157 * 8 6 5 10 10 O 1.21360 * 120.00087 * 359.97438 * 9 8 6 11 11 C 1.49315 * 119.99757 * 180.02562 * 9 8 6 12 12 O 1.21392 * 120.00344 * 0.02562 * 11 9 8 13 13 N 1.34779 * 119.99757 * 179.97438 * 11 9 8 14 14 C 1.39741 * 120.00016 * 175.50073 * 13 11 9 15 15 C 1.39000 * 120.00443 * 214.86428 * 14 13 11 16 16 C 1.37973 * 119.98956 * 179.76249 * 15 14 13 17 17 C 1.38937 * 120.00452 * 0.51166 * 16 15 14 18 18 O 1.35759 * 119.98891 * 179.72238 * 17 16 15 19 19 C 1.34805 * 116.99978 * 185.36852 * 18 17 16 20 20 H 1.07991 * 119.99966 * 354.96555 * 19 18 17 21 21 C 1.38656 * 119.99788 * 174.96036 * 19 18 17 22 22 N 1.31551 * 120.00072 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99560 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47345 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47142 * 120.00255 * 23 21 19 26 26 H 1.48498 * 109.47296 * 240.00359 * 23 21 19 27 27 C 1.38932 * 120.01913 * 359.74078 * 17 16 15 28 28 C 1.37972 * 120.00373 * 0.02562 * 27 17 16 29 29 C 1.53870 * 106.68507 * 23.34106 * 6 5 4 30 30 H 1.09001 * 109.47395 * 298.90887 * 1 2 3 31 31 H 1.09005 * 109.47655 * 58.90768 * 1 2 3 32 32 H 1.09001 * 109.47300 * 178.90939 * 1 2 3 33 33 H 1.09000 * 110.75544 * 274.93476 * 4 2 1 34 34 H 1.08998 * 110.75796 * 38.11886 * 4 2 1 35 35 H 1.08998 * 110.48468 * 80.82299 * 5 4 2 36 36 H 1.08996 * 110.49163 * 203.46973 * 5 4 2 37 37 H 0.96997 * 119.99927 * 92.19479 * 8 6 5 38 38 H 0.97001 * 120.00054 * 355.49458 * 13 11 9 39 39 H 1.07998 * 120.00081 * 0.02562 * 15 14 13 40 40 H 1.08001 * 119.99432 * 180.22870 * 16 15 14 41 41 H 0.97001 * 120.00334 * 179.97438 * 22 21 19 42 42 H 1.07999 * 119.99815 * 180.02562 * 27 17 16 43 43 H 1.07996 * 119.99927 * 179.97438 * 28 27 17 44 44 H 1.09001 * 110.03514 * 240.87653 * 29 6 5 45 45 H 1.09002 * 110.03579 * 119.44611 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0720 -0.7805 1.2230 5 6 3.4905 -1.2011 0.7644 6 6 3.3165 -1.5413 -0.7323 7 1 4.1927 -1.2185 -1.2945 8 7 3.1190 -2.9837 -0.8960 9 6 4.1840 -3.7991 -1.0278 10 8 5.3067 -3.3384 -1.0113 11 6 3.9826 -5.2691 -1.1952 12 8 2.8597 -5.7298 -1.2131 13 7 5.0477 -6.0844 -1.3275 14 6 4.8647 -7.4684 -1.3897 15 6 5.8054 -8.3200 -0.8224 16 6 5.6220 -9.6863 -0.8797 17 6 4.5025 -10.2111 -1.5136 18 8 4.3252 -11.5557 -1.5747 19 6 3.2794 -12.0028 -2.2982 20 1 2.5811 -11.3005 -2.7290 21 6 3.1002 -13.3644 -2.4894 22 7 3.9505 -14.2198 -1.9643 23 14 1.6514 -13.9838 -3.4926 24 1 0.8498 -12.8286 -3.9701 25 1 2.1507 -14.7551 -4.6592 26 1 0.8020 -14.8602 -2.6466 27 6 3.5647 -9.3602 -2.0852 28 6 3.7451 -7.9937 -2.0241 29 6 2.0699 -0.7803 -1.2164 30 1 -0.3634 0.4968 0.8996 31 1 -0.3634 0.5307 -0.8800 32 1 -0.3634 -1.0275 -0.0196 33 1 2.1251 -0.1357 2.1002 34 1 1.4561 -1.6565 1.4262 35 1 4.1916 -0.3757 0.8874 36 1 3.8278 -2.0755 1.3209 37 1 2.2217 -3.3518 -0.9096 38 1 5.9412 -5.7105 -1.3796 39 1 6.6776 -7.9122 -0.3332 40 1 6.3510 -10.3480 -0.4357 41 1 3.8250 -15.1724 -2.0978 42 1 2.6944 -9.7685 -2.5775 43 1 3.0163 -7.3324 -2.4688 44 1 1.3175 -1.4841 -1.5724 45 1 2.3411 -0.0881 -2.0136 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353368490.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:51 Heat of formation + Delta-G solvation = -99.013096 kcal Electronic energy + Delta-G solvation = -27225.051301 eV Core-core repulsion = 23207.041426 eV Total energy + Delta-G solvation = -4018.009875 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.12665 -40.93385 -40.12915 -38.95742 -38.21750 -35.80479 -34.88399 -34.17264 -31.92379 -31.50045 -30.01669 -29.43202 -27.44631 -26.33177 -25.21472 -23.97446 -22.98641 -21.65119 -21.25776 -20.76991 -20.13236 -19.57483 -18.83514 -18.32109 -17.65010 -17.08897 -16.82780 -16.53990 -16.28677 -16.06394 -15.58614 -15.49104 -15.25029 -15.05644 -14.75628 -14.66844 -14.39202 -14.19130 -13.85617 -13.59285 -13.41255 -13.27675 -13.23471 -12.82761 -12.75494 -12.71074 -12.44029 -12.30439 -12.10516 -11.95192 -11.72827 -11.47893 -11.46912 -11.39072 -11.13102 -10.72388 -10.58591 -10.29087 -9.88313 -8.70718 -8.47962 -6.14605 0.05314 0.50409 0.69134 1.24664 1.36106 1.43649 1.53990 2.06054 2.17486 2.57156 2.78845 3.12372 3.33146 3.48372 3.55656 3.59371 3.90872 4.05635 4.07920 4.31275 4.43718 4.44587 4.48325 4.53701 4.57243 4.61232 4.64049 4.71077 4.85421 4.95370 5.02017 5.04564 5.06726 5.13057 5.14497 5.26461 5.28625 5.33353 5.35916 5.42560 5.49381 5.56119 5.66020 5.88035 6.01045 6.09503 6.30726 6.70102 6.88318 6.96899 7.74926 8.74776 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020497 B = 0.002052 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.746947 B =13644.049012 C =14602.734833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.087 0.913 4 C -0.120 4.120 5 C -0.134 4.134 6 C 0.134 3.866 7 H 0.089 0.911 8 N -0.681 5.681 9 C 0.519 3.481 10 O -0.536 6.536 11 C 0.498 3.502 12 O -0.530 6.530 13 N -0.619 5.619 14 C 0.049 3.951 15 C -0.071 4.071 16 C -0.179 4.179 17 C 0.113 3.887 18 O -0.224 6.224 19 C -0.413 4.413 20 H 0.101 0.899 21 C -0.021 4.021 22 N -0.916 5.916 23 Si 1.017 2.983 24 H -0.254 1.254 25 H -0.267 1.267 26 H -0.268 1.268 27 C -0.228 4.228 28 C -0.068 4.068 29 C -0.124 4.124 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.417 0.583 38 H 0.429 0.571 39 H 0.164 0.836 40 H 0.131 0.869 41 H 0.273 0.727 42 H 0.122 0.878 43 H 0.133 0.867 44 H 0.078 0.922 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.558 30.296 2.687 30.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.105 0.895 4 C -0.158 4.158 5 C -0.172 4.172 6 C 0.031 3.969 7 H 0.107 0.893 8 N -0.334 5.334 9 C 0.299 3.701 10 O -0.414 6.414 11 C 0.280 3.720 12 O -0.407 6.407 13 N -0.266 5.266 14 C -0.045 4.045 15 C -0.091 4.091 16 C -0.199 4.199 17 C 0.062 3.938 18 O -0.130 6.130 19 C -0.489 4.489 20 H 0.118 0.882 21 C -0.219 4.219 22 N -0.554 5.554 23 Si 0.837 3.163 24 H -0.177 1.177 25 H -0.192 1.192 26 H -0.193 1.193 27 C -0.247 4.247 28 C -0.088 4.088 29 C -0.162 4.162 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.255 0.745 38 H 0.268 0.732 39 H 0.182 0.818 40 H 0.149 0.851 41 H 0.082 0.918 42 H 0.140 0.860 43 H 0.151 0.849 44 H 0.097 0.903 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.399 29.971 2.807 30.293 hybrid contribution -0.478 -0.910 -0.372 1.093 sum -3.877 29.060 2.435 29.419 Atomic orbital electron populations 1.21816 0.94367 1.01923 1.02213 1.21967 0.95963 0.99566 0.93545 0.89456 1.22603 0.94933 1.00000 0.98235 1.22807 0.98516 1.01565 0.94316 1.21989 1.00215 0.77417 0.97304 0.89284 1.46031 1.09290 1.07911 1.70152 1.19703 0.85714 0.86539 0.78119 1.90759 1.23803 1.76793 1.50014 1.20503 0.85055 0.88315 0.78119 1.90776 1.24086 1.77030 1.48796 1.42790 1.11011 1.03758 1.69065 1.17372 0.99138 0.82138 1.05815 1.20782 0.99626 0.90852 0.97822 1.20308 0.97664 0.95498 1.06448 1.19967 0.94623 0.84277 0.94971 1.83937 1.47590 1.17432 1.64080 1.21838 1.03508 0.92601 1.30962 0.88213 1.26554 1.02019 0.94630 0.98687 1.70173 1.37844 1.03054 1.44363 0.84543 0.75757 0.78769 0.77249 1.17701 1.19233 1.19298 1.21106 1.01858 0.93579 1.08205 1.20938 0.97376 0.93735 0.96745 1.22564 0.95423 0.99232 0.98942 0.92213 0.92076 0.92919 0.90532 0.91888 0.89556 0.92690 0.74532 0.73178 0.81831 0.85142 0.91754 0.86018 0.84917 0.90344 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.12 71.98 0.66 -0.46 16 2 C -0.09 -0.73 3.46 -9.72 -0.03 -0.76 16 3 H 0.09 0.56 8.14 -2.38 -0.02 0.55 16 4 C -0.12 -1.20 6.32 31.88 0.20 -1.00 16 5 C -0.13 -1.70 6.55 31.74 0.21 -1.49 16 6 C 0.13 1.80 3.25 45.78 0.15 1.95 16 7 H 0.09 1.35 7.56 -2.39 -0.02 1.33 16 8 N -0.68 -11.68 5.02 -440.24 -2.21 -13.89 16 9 C 0.52 11.74 7.88 87.23 0.69 12.42 16 10 O -0.54 -13.63 16.13 -3.28 -0.05 -13.68 16 11 C 0.50 13.40 7.73 87.23 0.67 14.08 16 12 O -0.53 -16.88 13.91 -3.38 -0.05 -16.93 16 13 N -0.62 -16.38 5.32 -304.74 -1.62 -18.00 16 14 C 0.05 1.61 6.30 38.24 0.24 1.85 16 15 C -0.07 -2.29 9.96 22.39 0.22 -2.07 16 16 C -0.18 -7.30 9.98 22.37 0.22 -7.08 16 17 C 0.11 5.56 6.65 22.60 0.15 5.71 16 18 O -0.22 -13.33 9.75 -22.58 -0.22 -13.55 16 19 C -0.41 -24.00 9.48 67.92 0.64 -23.36 16 20 H 0.10 5.39 5.19 -2.92 -0.02 5.37 16 21 C -0.02 -1.19 5.49 84.83 0.47 -0.72 16 22 N -0.92 -55.75 13.67 21.61 0.30 -55.46 16 23 Si 1.02 42.94 29.55 68.60 2.03 44.97 16 24 H -0.25 -9.99 7.11 99.48 0.71 -9.29 16 25 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 26 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 27 C -0.23 -10.28 9.16 22.37 0.20 -10.08 16 28 C -0.07 -2.62 8.69 22.39 0.19 -2.43 16 29 C -0.12 -1.11 6.14 31.32 0.19 -0.92 16 30 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 32 H 0.05 0.46 8.11 -2.39 -0.02 0.44 16 33 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 0.73 8.06 -2.39 -0.02 0.71 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.05 0.91 8.04 -2.39 -0.02 0.89 16 37 H 0.42 6.57 7.79 -92.71 -0.72 5.85 16 38 H 0.43 9.10 8.30 -92.71 -0.77 8.34 16 39 H 0.16 3.81 8.06 -2.91 -0.02 3.79 16 40 H 0.13 5.06 8.06 -2.91 -0.02 5.04 16 41 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 42 H 0.12 5.63 5.63 -2.91 -0.02 5.61 16 43 H 0.13 4.92 6.22 -2.91 -0.02 4.90 16 44 H 0.08 0.72 7.29 -2.39 -0.02 0.70 16 45 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -72.32 376.32 2.81 -69.51 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: -0.45 Total: 31.39 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: 5.08 Total: -14.36 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -3.54 Total: -87.35 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -0.32 Total: -44.16 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -72.32 2.81 -69.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353368490.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.503 kcal (2) G-P(sol) polarization free energy of solvation -72.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds