Wall clock time and date at job start Tue Mar 31 2020 16:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00242 * 2 1 4 4 O 1.42898 * 109.47081 * 134.99829 * 3 2 1 5 5 C 1.42900 * 114.00064 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.47106 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.46968 * 64.99935 * 6 5 4 8 8 C 1.34781 * 119.99851 * 180.02562 * 7 6 5 9 9 O 1.21359 * 119.99673 * 0.02562 * 8 7 6 10 10 C 1.49354 * 120.00058 * 179.97438 * 8 7 6 11 11 O 1.21376 * 119.99810 * 0.02562 * 10 8 7 12 12 N 1.34781 * 120.00058 * 179.97438 * 10 8 7 13 13 C 1.39715 * 119.99781 * 185.27575 * 12 10 8 14 14 C 1.38934 * 120.07394 * 213.32338 * 13 12 10 15 15 C 1.38098 * 119.92297 * 180.02562 * 14 13 12 16 16 C 1.38295 * 120.07470 * 0.03068 * 15 14 13 17 17 C 1.50697 * 119.91952 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.47160 * 90.00090 * 17 16 15 19 19 H 1.08000 * 119.99736 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99832 * 180.27507 * 18 17 16 21 21 N 1.31516 * 120.00157 * 359.71894 * 20 18 17 22 22 Si 1.86797 * 119.99786 * 179.72367 * 20 18 17 23 23 H 1.48506 * 109.47362 * 89.99900 * 22 20 18 24 24 H 1.48499 * 109.47119 * 209.99727 * 22 20 18 25 25 H 1.48498 * 109.47280 * 329.99744 * 22 20 18 26 26 C 1.38285 * 120.15328 * 0.24526 * 16 15 14 27 27 C 1.38095 * 120.07904 * 359.45568 * 26 16 15 28 28 H 1.07995 * 120.00114 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.99822 * 359.97438 * 1 2 3 30 30 H 1.07996 * 119.99981 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.46926 * 15.00836 * 3 2 1 32 32 H 1.08998 * 109.47654 * 255.00352 * 3 2 1 33 33 H 1.08990 * 109.47558 * 60.00570 * 5 4 3 34 34 H 1.08999 * 109.46855 * 299.99863 * 5 4 3 35 35 H 1.09003 * 109.47133 * 305.00066 * 6 5 4 36 36 H 1.08998 * 109.47148 * 184.99515 * 6 5 4 37 37 H 0.96994 * 120.00678 * 359.97438 * 7 6 5 38 38 H 0.97001 * 119.99339 * 5.27650 * 12 10 8 39 39 H 1.07996 * 120.03554 * 0.02562 * 14 13 12 40 40 H 1.08001 * 119.95994 * 180.02562 * 15 14 13 41 41 H 1.08993 * 109.47609 * 329.99696 * 17 16 15 42 42 H 1.09000 * 109.46807 * 209.99744 * 17 16 15 43 43 H 0.97000 * 120.00314 * 180.02562 * 21 20 18 44 44 H 1.08002 * 119.96303 * 179.72578 * 26 16 15 45 45 H 1.08002 * 120.04594 * 180.24674 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9078 2.4352 1.0329 6 6 5.0107 2.2539 2.0778 7 7 5.9395 1.2124 1.6318 8 6 6.9972 0.8796 2.3979 9 8 7.1799 1.4424 3.4575 10 6 7.9437 -0.1826 1.9435 11 8 7.7607 -0.7458 0.8840 12 7 9.0018 -0.5150 2.7095 13 6 9.9473 -1.4282 2.2362 14 6 10.5896 -2.2864 3.1200 15 6 11.5241 -3.1875 2.6489 16 6 11.8213 -3.2357 1.2991 17 6 12.8420 -4.2200 0.7889 18 6 12.1566 -5.5126 0.4274 19 1 11.0887 -5.6115 0.5549 20 6 12.8937 -6.5708 -0.0601 21 7 14.1942 -6.4504 -0.2150 22 14 12.0453 -8.1755 -0.5009 23 1 11.6220 -8.1372 -1.9238 24 1 12.9861 -9.3058 -0.2946 25 1 10.8532 -8.3594 0.3653 26 6 11.1880 -2.3791 0.4174 27 6 10.2480 -1.4798 0.8807 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9354 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3856 2.1161 0.2661 32 1 2.4756 1.4868 -0.9926 33 1 3.2680 3.2693 1.3206 34 1 4.3581 2.6406 0.0618 35 1 4.5657 1.9609 3.0287 36 1 5.5504 3.1925 2.2030 37 1 5.7928 0.7617 0.7855 38 1 9.1067 -0.1202 3.5892 39 1 10.3584 -2.2489 4.1743 40 1 12.0235 -3.8552 3.3354 41 1 13.5853 -4.4072 1.5637 42 1 13.3327 -3.8097 -0.0938 43 1 14.7128 -7.1948 -0.5583 44 1 11.4257 -2.4164 -0.6355 45 1 9.7509 -0.8137 0.1911 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354217015.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:23 Heat of formation + Delta-G solvation = -71.051223 kcal Electronic energy + Delta-G solvation = -26457.689554 eV Core-core repulsion = 22440.892197 eV Total energy + Delta-G solvation = -4016.797357 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.02310 -39.46563 -38.65149 -37.96119 -35.78700 -34.89932 -34.04262 -33.00775 -30.61101 -30.38545 -30.18069 -27.12531 -26.36647 -25.03504 -23.31731 -22.52692 -22.31705 -20.79104 -20.43676 -20.05021 -18.84701 -17.55164 -17.39168 -16.85002 -16.43473 -16.28809 -16.09324 -15.64753 -15.55254 -14.99477 -14.65790 -14.49821 -14.23857 -13.95386 -13.81393 -13.40256 -13.10585 -12.97300 -12.89078 -12.73487 -12.58948 -12.03938 -11.94905 -11.86301 -11.44076 -11.43301 -11.25531 -10.80765 -10.59060 -10.47528 -10.37620 -10.12567 -9.83092 -9.70458 -9.61033 -9.49019 -9.29279 -8.41576 -8.34522 -7.46100 -6.03098 -4.06955 1.10664 1.66803 1.97619 2.01833 2.20328 3.08441 3.16400 3.32152 3.38200 3.43060 3.48168 4.22526 4.29059 4.37718 4.52403 4.54029 4.54287 4.63733 4.76698 4.83597 4.99891 5.07642 5.29361 5.30857 5.39078 5.39668 5.49683 5.81503 5.84506 5.96892 6.02408 6.09812 6.14593 6.14935 6.56389 6.59106 6.60204 6.75872 6.87182 7.11791 7.15884 7.29196 7.48733 7.56213 7.65744 7.83924 7.90715 7.92834 8.32655 8.98467 9.56949 11.06454 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012521 B = 0.002049 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.734899 B =13664.687382 C =15421.854275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.153 4.153 3 C 0.089 3.911 4 O -0.382 6.382 5 C 0.048 3.952 6 C 0.121 3.879 7 N -0.696 5.696 8 C 0.512 3.488 9 O -0.522 6.522 10 C 0.501 3.499 11 O -0.500 6.500 12 N -0.635 5.635 13 C 0.097 3.903 14 C -0.136 4.136 15 C -0.107 4.107 16 C -0.038 4.038 17 C 0.047 3.953 18 C -0.511 4.511 19 H 0.058 0.942 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.895 3.105 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.108 4.108 27 C -0.115 4.115 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.119 0.881 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.417 0.583 38 H 0.417 0.583 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.030 0.970 42 H 0.030 0.970 43 H 0.262 0.738 44 H 0.123 0.877 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.440 20.458 3.236 30.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.171 4.171 3 C 0.013 3.987 4 O -0.301 6.301 5 C -0.029 4.029 6 C -0.002 4.002 7 N -0.350 5.350 8 C 0.293 3.707 9 O -0.398 6.398 10 C 0.282 3.718 11 O -0.374 6.374 12 N -0.281 5.281 13 C 0.005 3.995 14 C -0.156 4.156 15 C -0.126 4.126 16 C -0.038 4.038 17 C 0.010 3.990 18 C -0.549 4.549 19 H 0.076 0.924 20 C -0.144 4.144 21 N -0.533 5.533 22 Si 0.723 3.277 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.127 4.127 27 C -0.134 4.134 28 H 0.123 0.877 29 H 0.115 0.885 30 H 0.137 0.863 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.254 0.746 38 H 0.254 0.746 39 H 0.135 0.865 40 H 0.143 0.857 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.071 0.929 44 H 0.141 0.859 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.295 20.259 3.293 30.304 hybrid contribution -0.600 -0.756 -0.400 1.045 sum -22.896 19.503 2.893 30.215 Atomic orbital electron populations 1.23857 0.95555 1.02349 0.99869 1.22762 0.95686 0.98290 1.00388 1.21569 0.88683 0.96069 0.92394 1.87980 1.44796 1.36577 1.60770 1.22791 0.92675 0.88372 0.99094 1.21523 0.88802 0.91723 0.98175 1.45659 1.25204 1.39521 1.24605 1.20065 0.82346 0.83677 0.84630 1.90768 1.73651 1.53282 1.22084 1.20069 0.82270 0.84021 0.85439 1.90816 1.72713 1.51640 1.22195 1.43017 1.21960 1.42612 1.20519 1.17508 0.93826 0.94278 0.93927 1.20783 0.99724 0.96477 0.98589 1.20912 0.97867 0.97865 0.95956 1.20771 0.96368 0.94102 0.92560 1.18372 0.92055 0.91733 0.96824 1.21067 0.94247 0.96601 1.43015 0.92417 1.25010 0.94852 0.98867 0.95631 1.69956 1.05470 1.32051 1.45848 0.86534 0.79348 0.82937 0.78889 1.20579 1.21186 1.19798 1.20994 0.96204 0.95452 1.00014 1.20979 0.98289 1.00497 0.93676 0.87662 0.88469 0.86317 0.92655 0.92044 0.91074 0.92051 0.89838 0.89141 0.74580 0.74594 0.86454 0.85749 0.95187 0.95208 0.92858 0.85868 0.85835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.98 14.31 29.01 0.42 -0.56 16 2 C -0.15 -1.03 9.89 -36.03 -0.36 -1.38 16 3 C 0.09 0.53 6.35 36.01 0.23 0.76 16 4 O -0.38 -2.95 10.27 -35.23 -0.36 -3.31 16 5 C 0.05 0.24 6.07 37.16 0.23 0.47 16 6 C 0.12 0.83 6.06 -4.04 -0.02 0.80 16 7 N -0.70 -6.49 5.50 -60.76 -0.33 -6.83 16 8 C 0.51 6.11 7.89 -11.63 -0.09 6.02 16 9 O -0.52 -6.95 16.48 5.49 0.09 -6.86 16 10 C 0.50 6.98 7.62 -11.63 -0.09 6.89 16 11 O -0.50 -8.15 14.16 5.47 0.08 -8.07 16 12 N -0.64 -8.73 5.32 -10.29 -0.05 -8.78 16 13 C 0.10 1.60 6.28 -83.75 -0.53 1.08 16 14 C -0.14 -2.23 9.97 -39.37 -0.39 -2.62 16 15 C -0.11 -2.05 9.69 -39.61 -0.38 -2.44 16 16 C -0.04 -0.81 5.07 -104.58 -0.53 -1.34 16 17 C 0.05 1.20 5.10 -29.03 -0.15 1.05 16 18 C -0.51 -14.36 9.09 -34.44 -0.31 -14.67 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 22 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 26 C -0.11 -2.16 9.69 -39.62 -0.38 -2.54 16 27 C -0.11 -2.07 8.65 -39.38 -0.34 -2.41 16 28 H 0.11 0.49 8.06 -52.49 -0.42 0.07 16 29 H 0.10 0.41 7.90 -52.48 -0.41 0.00 16 30 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.06 0.25 7.86 -51.93 -0.41 -0.16 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.42 3.77 7.94 -40.82 -0.32 3.45 16 38 H 0.42 4.75 8.30 -40.82 -0.34 4.42 16 39 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 41 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 42 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 45 H 0.12 2.14 6.42 -52.49 -0.34 1.81 16 LS Contribution 394.70 15.07 5.95 5.95 Total: -1.00 -33.22 394.70 -8.16 -41.38 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.43 Total: 4.83 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -2.81 Total: -9.36 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.35 Total: -41.26 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.19 Total: -18.25 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.22 -8.16 -41.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354217015.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.669 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds