Wall clock time and date at job start Tue Mar 31 2020 16:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 120.00242 * 2 1 4 4 O 1.42898 * 109.47081 * 134.99829 * 3 2 1 5 5 C 1.42900 * 114.00064 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.47106 * 180.02562 * 5 4 3 7 7 N 1.46499 * 109.46968 * 64.99935 * 6 5 4 8 8 C 1.34781 * 119.99851 * 180.02562 * 7 6 5 9 9 O 1.21359 * 119.99673 * 0.02562 * 8 7 6 10 10 C 1.49354 * 120.00058 * 179.97438 * 8 7 6 11 11 O 1.21376 * 119.99810 * 0.02562 * 10 8 7 12 12 N 1.34781 * 120.00058 * 179.97438 * 10 8 7 13 13 C 1.39715 * 119.99781 * 185.27575 * 12 10 8 14 14 C 1.38934 * 120.07394 * 213.32338 * 13 12 10 15 15 C 1.38098 * 119.92297 * 180.02562 * 14 13 12 16 16 C 1.38295 * 120.07470 * 0.03068 * 15 14 13 17 17 C 1.50697 * 119.91952 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.47160 * 90.00090 * 17 16 15 19 19 H 1.08000 * 119.99736 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99832 * 180.27507 * 18 17 16 21 21 N 1.31516 * 120.00157 * 359.71894 * 20 18 17 22 22 Si 1.86797 * 119.99786 * 179.72367 * 20 18 17 23 23 H 1.48506 * 109.47362 * 89.99900 * 22 20 18 24 24 H 1.48499 * 109.47119 * 209.99727 * 22 20 18 25 25 H 1.48498 * 109.47280 * 329.99744 * 22 20 18 26 26 C 1.38285 * 120.15328 * 0.24526 * 16 15 14 27 27 C 1.38095 * 120.07904 * 359.45568 * 26 16 15 28 28 H 1.07995 * 120.00114 * 179.97438 * 1 2 3 29 29 H 1.08006 * 119.99822 * 359.97438 * 1 2 3 30 30 H 1.07996 * 119.99981 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.46926 * 15.00836 * 3 2 1 32 32 H 1.08998 * 109.47654 * 255.00352 * 3 2 1 33 33 H 1.08990 * 109.47558 * 60.00570 * 5 4 3 34 34 H 1.08999 * 109.46855 * 299.99863 * 5 4 3 35 35 H 1.09003 * 109.47133 * 305.00066 * 6 5 4 36 36 H 1.08998 * 109.47148 * 184.99515 * 6 5 4 37 37 H 0.96994 * 120.00678 * 359.97438 * 7 6 5 38 38 H 0.97001 * 119.99339 * 5.27650 * 12 10 8 39 39 H 1.07996 * 120.03554 * 0.02562 * 14 13 12 40 40 H 1.08001 * 119.95994 * 180.02562 * 15 14 13 41 41 H 1.08993 * 109.47609 * 329.99696 * 17 16 15 42 42 H 1.09000 * 109.46807 * 209.99744 * 17 16 15 43 43 H 0.97000 * 120.00314 * 180.02562 * 21 20 18 44 44 H 1.08002 * 119.96303 * 179.72578 * 26 16 15 45 45 H 1.08002 * 120.04594 * 180.24674 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1267 1.2412 0.9527 5 6 3.9078 2.4352 1.0329 6 6 5.0107 2.2539 2.0778 7 7 5.9395 1.2124 1.6318 8 6 6.9972 0.8796 2.3979 9 8 7.1799 1.4424 3.4575 10 6 7.9437 -0.1826 1.9435 11 8 7.7607 -0.7458 0.8840 12 7 9.0018 -0.5150 2.7095 13 6 9.9473 -1.4282 2.2362 14 6 10.5896 -2.2864 3.1200 15 6 11.5241 -3.1875 2.6489 16 6 11.8213 -3.2357 1.2991 17 6 12.8420 -4.2200 0.7889 18 6 12.1566 -5.5126 0.4274 19 1 11.0887 -5.6115 0.5549 20 6 12.8937 -6.5708 -0.0601 21 7 14.1942 -6.4504 -0.2150 22 14 12.0453 -8.1755 -0.5009 23 1 11.6220 -8.1372 -1.9238 24 1 12.9861 -9.3058 -0.2946 25 1 10.8532 -8.3594 0.3653 26 6 11.1880 -2.3791 0.4174 27 6 10.2480 -1.4798 0.8807 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9354 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3856 2.1161 0.2661 32 1 2.4756 1.4868 -0.9926 33 1 3.2680 3.2693 1.3206 34 1 4.3581 2.6406 0.0618 35 1 4.5657 1.9609 3.0287 36 1 5.5504 3.1925 2.2030 37 1 5.7928 0.7617 0.7855 38 1 9.1067 -0.1202 3.5892 39 1 10.3584 -2.2489 4.1743 40 1 12.0235 -3.8552 3.3354 41 1 13.5853 -4.4072 1.5637 42 1 13.3327 -3.8097 -0.0938 43 1 14.7128 -7.1948 -0.5583 44 1 11.4257 -2.4164 -0.6355 45 1 9.7509 -0.8137 0.1911 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354217015.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:22 Heat of formation + Delta-G solvation = -93.466306 kcal Electronic energy + Delta-G solvation = -26458.661544 eV Core-core repulsion = 22440.892197 eV Total energy + Delta-G solvation = -4017.769348 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.12404 -40.55528 -39.41610 -39.05666 -36.78339 -35.99009 -34.99127 -34.56301 -32.30657 -31.83479 -30.84818 -28.77421 -26.94379 -26.21422 -24.77006 -23.92061 -23.25916 -22.07151 -21.35256 -20.87453 -19.89157 -18.58756 -18.47553 -17.96198 -17.77920 -17.20736 -17.08059 -16.80304 -16.33532 -16.17467 -15.96971 -15.77023 -15.40075 -15.08586 -14.65437 -14.51657 -14.41240 -14.28957 -13.98670 -13.72076 -13.50345 -13.36463 -13.22556 -13.15238 -12.85383 -12.61771 -12.44350 -12.39640 -12.03310 -11.86510 -11.69017 -11.52466 -11.13722 -10.93358 -10.72339 -10.59557 -10.37160 -10.24987 -9.80814 -8.97417 -8.18688 -6.32331 -0.02869 0.53268 0.65802 1.18725 1.23270 1.39968 1.40579 1.52245 2.02661 2.40141 2.50327 2.76856 2.95685 3.11069 3.30263 3.80233 4.01037 4.09548 4.09737 4.14637 4.22007 4.35688 4.44446 4.45376 4.53523 4.57738 4.60801 4.62044 4.63835 4.79119 4.98330 5.08638 5.09426 5.24977 5.28521 5.38318 5.38438 5.54414 5.65835 5.71309 5.75420 5.83128 6.06039 6.08166 6.19942 6.21931 6.24632 6.63799 6.80088 6.82440 7.35895 8.89414 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012521 B = 0.002049 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.734899 B =13664.687382 C =15421.854275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.177 4.177 3 C 0.088 3.912 4 O -0.409 6.409 5 C 0.049 3.951 6 C 0.117 3.883 7 N -0.684 5.684 8 C 0.519 3.481 9 O -0.536 6.536 10 C 0.502 3.498 11 O -0.525 6.525 12 N -0.627 5.627 13 C 0.109 3.891 14 C -0.123 4.123 15 C -0.112 4.112 16 C -0.069 4.069 17 C 0.056 3.944 18 C -0.528 4.528 19 H 0.052 0.948 20 C 0.005 3.995 21 N -0.928 5.928 22 Si 0.963 3.037 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.267 1.267 26 C -0.117 4.117 27 C -0.118 4.118 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.419 0.581 38 H 0.431 0.569 39 H 0.158 0.842 40 H 0.129 0.871 41 H 0.010 0.990 42 H 0.004 0.996 43 H 0.265 0.735 44 H 0.117 0.883 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.032 21.734 4.080 33.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.195 4.195 3 C 0.012 3.988 4 O -0.329 6.329 5 C -0.028 4.028 6 C -0.005 4.005 7 N -0.337 5.337 8 C 0.298 3.702 9 O -0.414 6.414 10 C 0.284 3.716 11 O -0.400 6.400 12 N -0.274 5.274 13 C 0.016 3.984 14 C -0.142 4.142 15 C -0.130 4.130 16 C -0.070 4.070 17 C 0.019 3.981 18 C -0.566 4.566 19 H 0.070 0.930 20 C -0.193 4.193 21 N -0.568 5.568 22 Si 0.788 3.212 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.136 4.136 27 C -0.138 4.138 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.122 0.878 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.124 0.876 37 H 0.256 0.744 38 H 0.271 0.729 39 H 0.175 0.825 40 H 0.147 0.853 41 H 0.028 0.972 42 H 0.023 0.977 43 H 0.074 0.926 44 H 0.135 0.865 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -24.917 21.569 4.146 33.216 hybrid contribution 0.105 -1.046 -0.647 1.234 sum -24.813 20.523 3.499 32.390 Atomic orbital electron populations 1.24044 0.95227 1.03324 0.98208 1.22844 0.96314 0.98349 1.02029 1.21652 0.88605 0.96017 0.92511 1.87938 1.45542 1.38002 1.61406 1.22898 0.92356 0.88314 0.99184 1.21763 0.88892 0.91375 0.98458 1.45758 1.24443 1.39404 1.24105 1.19627 0.82620 0.83221 0.84706 1.90771 1.74140 1.53812 1.22665 1.20509 0.82295 0.83952 0.84842 1.90812 1.73360 1.52540 1.23295 1.42953 1.21338 1.41974 1.21176 1.17588 0.93410 0.93991 0.93376 1.21054 0.97954 0.94738 1.00493 1.20991 0.98548 0.98688 0.94817 1.20476 0.97268 0.94974 0.94251 1.18112 0.92570 0.92213 0.95186 1.21371 0.94113 0.97968 1.43136 0.92983 1.25894 0.95511 1.02497 0.95429 1.70070 1.06881 1.33262 1.46575 0.85474 0.78411 0.78572 0.78776 1.19862 1.20305 1.19180 1.20943 0.96951 0.96025 0.99660 1.21024 0.97786 1.00147 0.94805 0.87262 0.86941 0.87845 0.91013 0.91303 0.88587 0.90846 0.90536 0.87578 0.74361 0.72907 0.82469 0.85328 0.97188 0.97729 0.92565 0.86512 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 14.31 67.78 0.97 -0.66 16 2 C -0.18 -2.24 9.89 25.65 0.25 -1.99 16 3 C 0.09 0.90 6.35 71.24 0.45 1.35 16 4 O -0.41 -5.64 10.27 -148.98 -1.53 -7.17 16 5 C 0.05 0.38 6.07 71.98 0.44 0.82 16 6 C 0.12 1.33 6.06 86.38 0.52 1.86 16 7 N -0.68 -11.51 5.50 -464.49 -2.55 -14.06 16 8 C 0.52 11.37 7.89 87.24 0.69 12.06 16 9 O -0.54 -13.12 16.48 -3.27 -0.05 -13.18 16 10 C 0.50 13.11 7.62 87.24 0.67 13.78 16 11 O -0.52 -16.49 14.16 -3.33 -0.05 -16.54 16 12 N -0.63 -15.78 5.32 -304.83 -1.62 -17.41 16 13 C 0.11 3.43 6.28 38.22 0.24 3.67 16 14 C -0.12 -3.75 9.97 22.40 0.22 -3.53 16 15 C -0.11 -4.24 9.69 22.25 0.22 -4.02 16 16 C -0.07 -3.08 5.07 -19.84 -0.10 -3.18 16 17 C 0.06 3.02 5.10 29.10 0.15 3.17 16 18 C -0.53 -30.55 9.09 25.60 0.23 -30.32 16 19 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 20 C 0.00 0.28 5.46 84.65 0.46 0.75 16 21 N -0.93 -56.12 13.29 21.45 0.28 -55.83 16 22 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 23 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 26 C -0.12 -4.80 9.69 22.25 0.22 -4.59 16 27 C -0.12 -4.20 8.65 22.40 0.19 -4.01 16 28 H 0.11 0.90 8.06 -2.91 -0.02 0.88 16 29 H 0.11 0.70 7.90 -2.91 -0.02 0.68 16 30 H 0.10 1.56 8.06 -2.91 -0.02 1.53 16 31 H 0.07 0.47 7.86 -2.38 -0.02 0.45 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.42 6.93 7.94 -92.71 -0.74 6.20 16 38 H 0.43 8.57 8.30 -92.71 -0.77 7.80 16 39 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 40 H 0.13 4.67 8.06 -2.91 -0.02 4.65 16 41 H 0.01 0.55 8.08 -2.39 -0.02 0.53 16 42 H 0.00 0.25 8.08 -2.39 -0.02 0.23 16 43 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 44 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 45 H 0.13 4.45 6.42 -2.91 -0.02 4.43 16 Total: -1.00 -72.73 394.70 1.83 -70.90 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -0.49 Total: 21.13 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: 5.82 Total: -14.85 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -3.89 Total: -87.30 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -1.63 Total: -36.88 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -72.73 1.83 -70.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354217015.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.565 kcal (2) G-P(sol) polarization free energy of solvation -72.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds