Wall clock time and date at job start Tue Mar 31 2020 16:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50700 * 109.47073 * 2 1 4 4 O 1.21305 * 120.00142 * 359.73125 * 3 2 1 5 5 C 1.46830 * 119.99906 * 179.97438 * 3 2 1 6 6 C 1.40067 * 120.10086 * 359.45239 * 5 3 2 7 7 C 1.36593 * 119.89465 * 179.73834 * 6 5 3 8 8 C 1.39222 * 120.10414 * 0.53918 * 7 6 5 9 9 N 1.39299 * 119.90027 * 179.71520 * 8 7 6 10 10 C 1.34779 * 120.00281 * 213.59506 * 9 8 7 11 11 O 1.21574 * 119.99684 * 5.32726 * 10 9 8 12 12 N 1.34777 * 119.99907 * 185.32391 * 10 9 8 13 13 C 1.47012 * 125.65079 * 359.69767 * 12 10 9 14 14 C 1.54334 * 107.26506 * 178.84497 * 13 12 10 15 15 C 1.55149 * 103.02348 * 338.13916 * 14 13 12 16 16 O 1.42898 * 111.00592 * 277.23468 * 15 14 13 17 17 C 1.50701 * 111.03803 * 153.39058 * 15 14 13 18 18 H 1.08004 * 119.99962 * 6.33563 * 17 15 14 19 19 C 1.37879 * 120.00089 * 186.33269 * 17 15 14 20 20 N 1.31513 * 119.99835 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 120.00154 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46868 * 89.99991 * 21 19 17 23 23 H 1.48503 * 109.46954 * 210.00105 * 21 19 17 24 24 H 1.48503 * 109.46946 * 330.00016 * 21 19 17 25 25 C 1.47422 * 125.64352 * 180.02562 * 12 10 9 26 26 C 1.39219 * 120.20017 * 359.73609 * 8 7 6 27 27 C 1.36597 * 120.10300 * 359.97438 * 26 8 7 28 28 H 1.08993 * 109.47060 * 59.99430 * 1 2 3 29 29 H 1.08993 * 109.46799 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46521 * 299.99438 * 1 2 3 31 31 H 1.09003 * 109.46521 * 240.00562 * 2 1 3 32 32 H 1.08993 * 109.47060 * 120.00570 * 2 1 3 33 33 H 1.07995 * 120.04876 * 0.02562 * 6 5 3 34 34 H 1.07995 * 119.94792 * 180.27808 * 7 6 5 35 35 H 0.97005 * 120.00003 * 33.60021 * 9 8 7 36 36 H 1.09002 * 109.88579 * 298.39048 * 13 12 10 37 37 H 1.09000 * 109.88357 * 59.55599 * 13 12 10 38 38 H 1.09005 * 110.85179 * 219.66613 * 14 13 12 39 39 H 1.09006 * 110.51604 * 96.45496 * 14 13 12 40 40 H 0.96698 * 114.00240 * 173.64821 * 16 15 14 41 41 H 0.97006 * 120.00065 * 180.02562 * 20 19 17 42 42 H 1.09001 * 110.37147 * 322.93131 * 25 12 10 43 43 H 1.09002 * 110.36644 * 85.14737 * 25 12 10 44 44 H 1.08004 * 119.94911 * 180.02562 * 26 8 7 45 45 H 1.08006 * 120.04901 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2441 2.3428 -0.0049 5 6 3.4760 1.6891 0.0006 6 6 4.3880 0.6261 0.0127 7 6 5.7301 0.8805 0.0078 8 6 6.1918 2.1939 0.0021 9 7 7.5614 2.4484 0.0030 10 6 8.0453 3.5306 0.6444 11 8 7.3004 4.2307 1.3024 12 7 9.3549 3.8366 0.5561 13 6 10.3636 3.0766 -0.1964 14 6 11.7092 3.8143 -0.0326 15 6 11.2744 5.2553 0.3437 16 8 10.9459 6.0124 -0.8229 17 6 12.3410 5.9487 1.1516 18 1 13.2981 5.4722 1.3043 19 6 12.0949 7.1914 1.6959 20 7 10.9293 7.7714 1.5104 21 14 13.4173 8.0512 2.6967 22 1 14.2546 8.8853 1.7977 23 1 12.7787 8.9155 3.7217 24 1 14.2696 7.0361 3.3665 25 6 10.0143 4.9850 1.2038 26 6 5.2890 3.2536 -0.0042 27 6 3.9452 3.0088 -0.0053 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 4.0307 -0.3929 0.0212 34 1 6.4340 0.0615 0.0126 35 1 8.1669 1.8468 -0.4579 36 1 10.4415 2.0659 0.2045 37 1 10.0893 3.0393 -1.2506 38 1 12.2692 3.8123 -0.9678 39 1 12.2953 3.3663 0.7699 40 1 10.5766 6.8858 -0.6339 41 1 10.7563 8.6459 1.8930 42 1 9.3564 5.8541 1.1963 43 1 10.2972 4.7331 2.2259 44 1 5.6517 4.2709 -0.0090 45 1 3.2455 3.8316 -0.0106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364139854.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:02 Heat of formation + Delta-G solvation = -86.346090 kcal Electronic energy + Delta-G solvation = -27898.994726 eV Core-core repulsion = 23881.534134 eV Total energy + Delta-G solvation = -4017.460592 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.71701 -39.81983 -38.49331 -37.29508 -34.65348 -34.34464 -33.18786 -32.29435 -31.17922 -30.68749 -29.56211 -27.88080 -25.75908 -24.86363 -23.52882 -22.58809 -22.24000 -20.05475 -19.75880 -19.47163 -18.21012 -17.39345 -17.13187 -16.77577 -15.83965 -15.65132 -15.41719 -15.20555 -14.77573 -14.54054 -14.43500 -14.12279 -13.78096 -13.55168 -13.40386 -13.16836 -12.93346 -12.82691 -12.62622 -12.42085 -12.24727 -12.02436 -11.73624 -11.59374 -11.44953 -11.27708 -11.08774 -10.93536 -10.72267 -10.52330 -10.36863 -10.24202 -9.94465 -9.70743 -9.45872 -9.13679 -8.76263 -8.48295 -8.22761 -7.83361 -6.33621 -4.43732 0.55649 1.35879 2.27743 2.78698 3.17739 3.25652 3.27409 3.38305 3.83087 3.86758 4.12959 4.23894 4.58704 4.74519 4.80188 4.82555 4.93083 5.00344 5.21788 5.25502 5.28661 5.41788 5.48891 5.49634 5.58839 5.63690 5.63745 5.84722 5.89010 5.90408 5.96776 6.05430 6.24097 6.34130 6.39096 6.49628 6.59434 6.76099 6.77713 6.94468 7.07686 7.20576 7.39410 7.43532 7.68083 7.94987 8.21135 8.60003 8.79045 9.22807 9.31530 10.73456 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028124 B = 0.002229 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.334833 B =12558.162292 C =13136.979245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.170 4.170 3 C 0.398 3.602 4 O -0.461 6.461 5 C -0.209 4.209 6 C -0.048 4.048 7 C -0.172 4.172 8 C 0.219 3.781 9 N -0.689 5.689 10 C 0.712 3.288 11 O -0.573 6.573 12 N -0.620 5.620 13 C 0.100 3.900 14 C -0.115 4.115 15 C 0.249 3.751 16 O -0.582 6.582 17 C -0.539 4.539 18 H 0.067 0.933 19 C 0.071 3.929 20 N -0.891 5.891 21 Si 0.904 3.096 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.111 3.889 26 C -0.139 4.139 27 C -0.034 4.034 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.407 0.593 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.382 0.618 41 H 0.271 0.729 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.145 0.855 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.013 -17.277 -4.516 20.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.208 4.208 3 C 0.277 3.723 4 O -0.337 6.337 5 C -0.211 4.211 6 C -0.067 4.067 7 C -0.193 4.193 8 C 0.121 3.879 9 N -0.335 5.335 10 C 0.415 3.585 11 O -0.450 6.450 12 N -0.356 5.356 13 C -0.023 4.023 14 C -0.153 4.153 15 C 0.208 3.792 16 O -0.391 6.391 17 C -0.577 4.577 18 H 0.085 0.915 19 C -0.132 4.132 20 N -0.530 5.530 21 Si 0.732 3.268 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.010 4.010 26 C -0.159 4.159 27 C -0.053 4.053 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.243 0.757 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.232 0.768 41 H 0.081 0.919 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.162 0.838 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.804 -16.591 -4.266 20.804 hybrid contribution 0.997 0.581 0.688 1.344 sum -10.808 -16.010 -3.577 19.645 Atomic orbital electron populations 1.21592 0.93803 1.01634 1.03105 1.21985 0.98216 0.96067 1.04491 1.22374 0.87938 0.91017 0.70978 1.90522 1.58450 1.47793 1.36921 1.20380 0.94692 0.94387 1.11608 1.20866 0.92128 0.98424 0.95289 1.20569 0.96285 0.94809 1.07684 1.17874 0.82762 0.93454 0.93788 1.42779 1.05989 1.28382 1.56359 1.15522 0.81955 0.80817 0.80254 1.90933 1.56584 1.52059 1.45431 1.48038 1.04764 1.30616 1.52175 1.22036 0.90304 0.94583 0.95419 1.22597 0.94155 0.96438 1.02136 1.19633 0.89680 0.87015 0.82837 1.86104 1.85890 1.33258 1.33852 1.21434 1.00157 1.03059 1.33095 0.91450 1.25089 0.95738 0.97064 0.95348 1.69708 1.21738 1.16531 1.44992 0.86391 0.81328 0.79456 0.79670 1.20363 1.20979 1.19693 1.23276 0.95621 0.85918 0.96186 1.21052 0.92285 1.00203 1.02381 1.21043 0.95240 0.96067 0.92991 0.92153 0.92170 0.92138 0.88428 0.88429 0.85007 0.85208 0.75733 0.92818 0.92287 0.90551 0.90266 0.76817 0.91899 0.89363 0.92103 0.83775 0.84830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.20 37.16 0.34 -0.71 16 2 C -0.17 -1.19 5.02 -27.88 -0.14 -1.33 16 3 C 0.40 4.37 7.11 -30.84 -0.22 4.16 16 4 O -0.46 -6.57 15.96 5.54 0.09 -6.48 16 5 C -0.21 -2.41 5.87 -105.05 -0.62 -3.02 16 6 C -0.05 -0.45 9.42 -39.49 -0.37 -0.82 16 7 C -0.17 -1.78 9.90 -39.81 -0.39 -2.17 16 8 C 0.22 3.01 6.27 -83.74 -0.53 2.48 16 9 N -0.69 -9.83 5.27 -14.21 -0.07 -9.90 16 10 C 0.71 13.57 8.21 -86.92 -0.71 12.85 16 11 O -0.57 -13.01 14.28 5.30 0.08 -12.93 16 12 N -0.62 -11.98 3.33 -176.22 -0.59 -12.57 16 13 C 0.10 1.58 6.16 -3.06 -0.02 1.56 16 14 C -0.12 -2.12 6.13 -24.90 -0.15 -2.27 16 15 C 0.25 5.73 0.87 -89.61 -0.08 5.65 16 16 O -0.58 -14.23 13.16 -35.23 -0.46 -14.69 16 17 C -0.54 -13.51 8.27 -34.44 -0.28 -13.80 16 18 H 0.07 1.65 7.79 -52.48 -0.41 1.24 16 19 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 20 N -0.89 -23.22 10.69 55.43 0.59 -22.63 16 21 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 C 0.11 2.56 5.38 -2.52 -0.01 2.55 16 26 C -0.14 -2.11 8.58 -39.81 -0.34 -2.45 16 27 C -0.03 -0.47 9.54 -39.49 -0.38 -0.85 16 28 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 31 H 0.10 0.49 8.10 -51.93 -0.42 0.07 16 32 H 0.10 0.52 8.07 -51.93 -0.42 0.10 16 33 H 0.13 0.75 7.03 -52.49 -0.37 0.38 16 34 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.41 4.49 7.81 -40.82 -0.32 4.17 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.08 1.37 8.03 -51.93 -0.42 0.95 16 40 H 0.38 9.65 7.57 45.56 0.34 10.00 16 41 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 42 H 0.09 2.30 7.33 -51.93 -0.38 1.92 16 43 H 0.06 1.45 8.03 -51.93 -0.42 1.04 16 44 H 0.14 2.54 6.41 -52.48 -0.34 2.21 16 45 H 0.13 1.80 7.64 -52.48 -0.40 1.40 16 LS Contribution 373.70 15.07 5.63 5.63 Total: -1.00 -30.69 373.70 -9.39 -40.08 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -5.63 Total: 15.06 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -4.00 Total: 3.55 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: -0.07 Total: -45.10 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -0.30 Total: -34.10 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.69 -9.39 -40.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364139854.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.267 kcal (2) G-P(sol) polarization free energy of solvation -30.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds