Wall clock time and date at job start Tue Mar 31 2020 16:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50700 * 109.47073 * 2 1 4 4 O 1.21305 * 120.00142 * 359.73125 * 3 2 1 5 5 C 1.46830 * 119.99906 * 179.97438 * 3 2 1 6 6 C 1.40067 * 120.10086 * 359.45239 * 5 3 2 7 7 C 1.36593 * 119.89465 * 179.73834 * 6 5 3 8 8 C 1.39222 * 120.10414 * 0.53918 * 7 6 5 9 9 N 1.39299 * 119.90027 * 179.71520 * 8 7 6 10 10 C 1.34779 * 120.00281 * 213.59506 * 9 8 7 11 11 O 1.21574 * 119.99684 * 5.32726 * 10 9 8 12 12 N 1.34777 * 119.99907 * 185.32391 * 10 9 8 13 13 C 1.47012 * 125.65079 * 359.69767 * 12 10 9 14 14 C 1.54334 * 107.26506 * 178.84497 * 13 12 10 15 15 C 1.55149 * 103.02348 * 338.13916 * 14 13 12 16 16 O 1.42898 * 111.00592 * 277.23468 * 15 14 13 17 17 C 1.50701 * 111.03803 * 153.39058 * 15 14 13 18 18 H 1.08004 * 119.99962 * 6.33563 * 17 15 14 19 19 C 1.37879 * 120.00089 * 186.33269 * 17 15 14 20 20 N 1.31513 * 119.99835 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 120.00154 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.46868 * 89.99991 * 21 19 17 23 23 H 1.48503 * 109.46954 * 210.00105 * 21 19 17 24 24 H 1.48503 * 109.46946 * 330.00016 * 21 19 17 25 25 C 1.47422 * 125.64352 * 180.02562 * 12 10 9 26 26 C 1.39219 * 120.20017 * 359.73609 * 8 7 6 27 27 C 1.36597 * 120.10300 * 359.97438 * 26 8 7 28 28 H 1.08993 * 109.47060 * 59.99430 * 1 2 3 29 29 H 1.08993 * 109.46799 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46521 * 299.99438 * 1 2 3 31 31 H 1.09003 * 109.46521 * 240.00562 * 2 1 3 32 32 H 1.08993 * 109.47060 * 120.00570 * 2 1 3 33 33 H 1.07995 * 120.04876 * 0.02562 * 6 5 3 34 34 H 1.07995 * 119.94792 * 180.27808 * 7 6 5 35 35 H 0.97005 * 120.00003 * 33.60021 * 9 8 7 36 36 H 1.09002 * 109.88579 * 298.39048 * 13 12 10 37 37 H 1.09000 * 109.88357 * 59.55599 * 13 12 10 38 38 H 1.09005 * 110.85179 * 219.66613 * 14 13 12 39 39 H 1.09006 * 110.51604 * 96.45496 * 14 13 12 40 40 H 0.96698 * 114.00240 * 173.64821 * 16 15 14 41 41 H 0.97006 * 120.00065 * 180.02562 * 20 19 17 42 42 H 1.09001 * 110.37147 * 322.93131 * 25 12 10 43 43 H 1.09002 * 110.36644 * 85.14737 * 25 12 10 44 44 H 1.08004 * 119.94911 * 180.02562 * 26 8 7 45 45 H 1.08006 * 120.04901 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2441 2.3428 -0.0049 5 6 3.4760 1.6891 0.0006 6 6 4.3880 0.6261 0.0127 7 6 5.7301 0.8805 0.0078 8 6 6.1918 2.1939 0.0021 9 7 7.5614 2.4484 0.0030 10 6 8.0453 3.5306 0.6444 11 8 7.3004 4.2307 1.3024 12 7 9.3549 3.8366 0.5561 13 6 10.3636 3.0766 -0.1964 14 6 11.7092 3.8143 -0.0326 15 6 11.2744 5.2553 0.3437 16 8 10.9459 6.0124 -0.8229 17 6 12.3410 5.9487 1.1516 18 1 13.2981 5.4722 1.3043 19 6 12.0949 7.1914 1.6959 20 7 10.9293 7.7714 1.5104 21 14 13.4173 8.0512 2.6967 22 1 14.2546 8.8853 1.7977 23 1 12.7787 8.9155 3.7217 24 1 14.2696 7.0361 3.3665 25 6 10.0143 4.9850 1.2038 26 6 5.2890 3.2536 -0.0042 27 6 3.9452 3.0088 -0.0053 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 4.0307 -0.3929 0.0212 34 1 6.4340 0.0615 0.0126 35 1 8.1669 1.8468 -0.4579 36 1 10.4415 2.0659 0.2045 37 1 10.0893 3.0393 -1.2506 38 1 12.2692 3.8123 -0.9678 39 1 12.2953 3.3663 0.7699 40 1 10.5766 6.8858 -0.6339 41 1 10.7563 8.6459 1.8930 42 1 9.3564 5.8541 1.1963 43 1 10.2972 4.7331 2.2259 44 1 5.6517 4.2709 -0.0090 45 1 3.2455 3.8316 -0.0106 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364139854.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:01 Heat of formation + Delta-G solvation = -107.580687 kcal Electronic energy + Delta-G solvation = -27899.915527 eV Core-core repulsion = 23881.534134 eV Total energy + Delta-G solvation = -4018.381393 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.95224 -40.89989 -39.75388 -38.71873 -36.16792 -35.81612 -34.24792 -33.86332 -32.12359 -32.08162 -30.74069 -29.53729 -27.24887 -26.01738 -24.73820 -23.79621 -23.17285 -21.52491 -21.19190 -20.47478 -19.54285 -18.99643 -18.55160 -17.77053 -17.09617 -17.05251 -16.56275 -16.37217 -16.25275 -16.19677 -15.54295 -15.19728 -15.02899 -14.78264 -14.65889 -14.44866 -14.28972 -13.88229 -13.74934 -13.66979 -13.52830 -13.28951 -13.06648 -12.85541 -12.64610 -12.54943 -12.35311 -12.24896 -12.20688 -12.10347 -11.96690 -11.58335 -11.31087 -11.20822 -10.68318 -10.65223 -10.34535 -10.08758 -9.64247 -9.10275 -8.26189 -6.43348 -0.39943 0.43000 1.29987 1.41181 1.43588 1.51241 1.53174 2.00825 2.36957 2.84211 2.87476 3.00332 3.09917 3.76286 3.76799 3.91071 4.04478 4.11227 4.14598 4.28910 4.29479 4.34237 4.34435 4.48703 4.51066 4.60854 4.73214 4.83426 4.98469 5.04162 5.05153 5.07502 5.11421 5.13525 5.17332 5.29459 5.33468 5.36819 5.38870 5.45288 5.48117 5.74382 5.91672 5.98242 6.08451 6.61887 6.63957 6.85394 7.25068 7.33403 7.35714 8.78712 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028124 B = 0.002229 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.334833 B =12558.162292 C =13136.979245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.162 4.162 3 C 0.396 3.604 4 O -0.506 6.506 5 C -0.211 4.211 6 C -0.027 4.027 7 C -0.153 4.153 8 C 0.195 3.805 9 N -0.667 5.667 10 C 0.708 3.292 11 O -0.621 6.621 12 N -0.626 5.626 13 C 0.101 3.899 14 C -0.110 4.110 15 C 0.231 3.769 16 O -0.587 6.587 17 C -0.554 4.554 18 H 0.071 0.929 19 C 0.025 3.975 20 N -0.916 5.916 21 Si 0.963 3.037 22 H -0.275 1.275 23 H -0.288 1.288 24 H -0.263 1.263 25 C 0.127 3.873 26 C -0.164 4.164 27 C -0.055 4.055 28 H 0.044 0.956 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.187 0.813 34 H 0.173 0.827 35 H 0.426 0.574 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.372 0.628 41 H 0.268 0.732 42 H 0.043 0.957 43 H 0.043 0.957 44 H 0.103 0.897 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.376 -22.399 -5.087 25.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.199 4.199 3 C 0.277 3.723 4 O -0.385 6.385 5 C -0.213 4.213 6 C -0.046 4.046 7 C -0.173 4.173 8 C 0.098 3.902 9 N -0.315 5.315 10 C 0.411 3.589 11 O -0.502 6.502 12 N -0.361 5.361 13 C -0.020 4.020 14 C -0.148 4.148 15 C 0.190 3.810 16 O -0.395 6.395 17 C -0.592 4.592 18 H 0.089 0.911 19 C -0.176 4.176 20 N -0.555 5.555 21 Si 0.789 3.211 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.187 1.187 25 C 0.004 3.996 26 C -0.185 4.185 27 C -0.074 4.074 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.149 0.851 32 H 0.145 0.855 33 H 0.204 0.796 34 H 0.190 0.810 35 H 0.265 0.735 36 H 0.118 0.882 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.221 0.779 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.121 0.879 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.149 -21.795 -4.884 24.963 hybrid contribution 0.702 2.145 0.845 2.410 sum -10.447 -19.650 -4.038 22.617 Atomic orbital electron populations 1.21623 0.94434 1.02810 1.01549 1.22078 0.97651 0.92911 1.07269 1.23066 0.87225 0.92742 0.69224 1.90521 1.59276 1.49657 1.39050 1.20682 0.96009 0.93889 1.10752 1.21421 0.91055 0.99957 0.92134 1.21011 0.97558 0.93784 1.04952 1.18131 0.81904 0.94660 0.95518 1.42387 1.06630 1.26984 1.55543 1.15703 0.81445 0.81534 0.80243 1.90907 1.57734 1.53959 1.47578 1.47928 1.05578 1.30133 1.52454 1.22260 0.87701 0.95694 0.96383 1.22603 0.95894 0.93201 1.03078 1.19896 0.89235 0.89296 0.82526 1.86095 1.85818 1.32853 1.34715 1.21805 1.00799 1.03418 1.33208 0.91054 1.25846 0.97415 0.97955 0.96421 1.69845 1.23245 1.16586 1.45841 0.85470 0.79031 0.78434 0.78200 1.20108 1.21429 1.18709 1.22747 0.95182 0.85895 0.95798 1.20807 0.93526 0.99192 1.04972 1.20983 0.94392 0.97450 0.94566 0.93693 0.89497 0.93916 0.85130 0.85481 0.79606 0.80954 0.73453 0.88211 0.90462 0.89440 0.89013 0.77921 0.92261 0.93793 0.93851 0.87905 0.86592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.20 71.98 0.66 -1.12 16 2 C -0.16 -1.56 5.02 29.85 0.15 -1.41 16 3 C 0.40 8.05 7.11 27.94 0.20 8.25 16 4 O -0.51 -14.81 15.96 -3.11 -0.05 -14.86 16 5 C -0.21 -4.52 5.87 -20.14 -0.12 -4.63 16 6 C -0.03 -0.37 9.42 22.33 0.21 -0.16 16 7 C -0.15 -2.44 9.90 22.12 0.22 -2.22 16 8 C 0.19 5.11 6.27 38.43 0.24 5.36 16 9 N -0.67 -18.07 5.27 -317.15 -1.67 -19.74 16 10 C 0.71 27.51 8.21 179.05 1.47 28.98 16 11 O -0.62 -30.15 14.28 -3.95 -0.06 -30.21 16 12 N -0.63 -24.21 3.33 -829.72 -2.76 -26.97 16 13 C 0.10 2.92 6.16 86.73 0.53 3.46 16 14 C -0.11 -3.83 6.13 31.78 0.19 -3.64 16 15 C 0.23 10.77 0.87 -10.14 -0.01 10.76 16 16 O -0.59 -29.49 13.16 -148.98 -1.96 -31.45 16 17 C -0.55 -28.08 8.27 25.60 0.21 -27.87 16 18 H 0.07 3.47 7.79 -2.91 -0.02 3.45 16 19 C 0.02 1.27 5.29 84.66 0.45 1.72 16 20 N -0.92 -49.99 10.69 21.45 0.23 -49.76 16 21 Si 0.96 41.42 29.54 68.60 2.03 43.45 16 22 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 24 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 25 C 0.13 6.10 5.38 86.87 0.47 6.57 16 26 C -0.16 -5.34 8.58 22.12 0.19 -5.15 16 27 C -0.05 -1.59 9.54 22.33 0.21 -1.38 16 28 H 0.04 0.68 8.10 -2.39 -0.02 0.66 16 29 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.04 0.66 8.10 -2.39 -0.02 0.64 16 31 H 0.13 0.49 8.10 -2.39 -0.02 0.47 16 32 H 0.13 0.58 8.07 -2.39 -0.02 0.56 16 33 H 0.19 0.57 7.03 -2.91 -0.02 0.55 16 34 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 35 H 0.43 7.90 7.81 -92.70 -0.72 7.17 16 36 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.09 2.84 8.14 -2.38 -0.02 2.82 16 39 H 0.09 2.94 8.03 -2.38 -0.02 2.92 16 40 H 0.37 19.89 7.57 -74.06 -0.56 19.33 16 41 H 0.27 14.15 8.31 -92.70 -0.77 13.38 16 42 H 0.04 2.47 7.33 -2.39 -0.02 2.45 16 43 H 0.04 2.17 8.03 -2.39 -0.02 2.15 16 44 H 0.10 4.13 6.41 -2.91 -0.02 4.11 16 45 H 0.12 3.60 7.64 -2.91 -0.02 3.58 16 Total: -1.00 -75.53 373.70 0.79 -74.74 By element: Atomic # 1 Polarization: 37.56 SS G_CDS: -0.25 Total: 37.30 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 5.28 Total: 17.50 kcal Atomic # 7 Polarization: -92.27 SS G_CDS: -4.20 Total: -96.47 kcal Atomic # 8 Polarization: -74.45 SS G_CDS: -2.07 Total: -76.52 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -75.53 0.79 -74.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364139854.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.845 kcal (2) G-P(sol) polarization free energy of solvation -75.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds