Wall clock time and date at job start Tue Mar 31 2020 16:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.46768 * 2 1 4 4 O 1.21251 * 120.00483 * 0.02562 * 3 2 1 5 5 C 1.47191 * 119.99531 * 180.02562 * 3 2 1 6 6 C 1.39887 * 120.14085 * 359.97438 * 5 3 2 7 7 C 1.37903 * 119.96501 * 180.02562 * 6 5 3 8 8 C 1.38302 * 120.24927 * 0.02562 * 7 6 5 9 9 C 1.38974 * 120.28373 * 0.02562 * 8 7 6 10 10 N 1.39981 * 119.98844 * 179.97438 * 9 8 7 11 11 C 1.34779 * 120.00469 * 146.76484 * 10 9 8 12 12 O 1.21582 * 119.99384 * 354.68577 * 11 10 9 13 13 N 1.34773 * 120.00022 * 174.68601 * 11 10 9 14 14 C 1.47745 * 125.82427 * 359.91160 * 13 11 10 15 15 C 1.54916 * 104.84000 * 155.82754 * 14 13 11 16 16 C 1.55150 * 101.58263 * 37.09164 * 15 14 13 17 17 O 1.42900 * 110.71824 * 82.86022 * 16 15 14 18 18 C 1.50703 * 110.87333 * 206.06388 * 16 15 14 19 19 H 1.08000 * 119.99537 * 355.06397 * 18 16 15 20 20 C 1.37872 * 120.00077 * 175.06920 * 18 16 15 21 21 N 1.31518 * 120.00181 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 120.00159 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47301 * 89.99351 * 22 20 18 24 24 H 1.48493 * 109.47364 * 209.99686 * 22 20 18 25 25 H 1.48493 * 109.47058 * 329.99790 * 22 20 18 26 26 C 1.47025 * 125.64461 * 179.97438 * 13 11 10 27 27 C 1.38559 * 120.02761 * 0.23075 * 9 8 7 28 28 H 1.09001 * 109.47193 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46979 * 299.99708 * 1 2 3 30 30 H 1.08995 * 109.47593 * 59.99655 * 1 2 3 31 31 H 1.08998 * 109.47360 * 240.00082 * 2 1 3 32 32 H 1.08998 * 109.47326 * 119.99446 * 2 1 3 33 33 H 1.08002 * 120.01535 * 0.02562 * 6 5 3 34 34 H 1.07997 * 119.87267 * 179.97438 * 7 6 5 35 35 H 1.08006 * 119.85607 * 180.02562 * 8 7 6 36 36 H 0.97003 * 120.00062 * 326.76638 * 10 9 8 37 37 H 1.09002 * 110.29188 * 37.02099 * 14 13 11 38 38 H 1.08996 * 110.43486 * 274.70309 * 14 13 11 39 39 H 1.09005 * 111.00449 * 279.01786 * 15 14 13 40 40 H 1.09000 * 110.99894 * 155.17174 * 15 14 13 41 41 H 0.96706 * 113.99850 * 185.02452 * 17 16 15 42 42 H 0.96996 * 120.00459 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.88122 * 61.61170 * 26 13 11 44 44 H 1.08996 * 109.88731 * 300.59874 * 26 13 11 45 45 H 1.08004 * 120.12277 * 179.74567 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2443 2.3425 0.0005 5 6 3.4794 1.6898 -0.0006 6 6 4.3910 0.6288 -0.0006 7 6 5.7460 0.8849 -0.0006 8 6 6.2087 2.1882 0.0000 9 6 5.3123 3.2502 0.0010 10 7 5.7874 4.5669 0.0021 11 6 5.0977 5.5328 -0.6366 12 8 4.1163 5.2453 -1.2941 13 7 5.4961 6.8171 -0.5465 14 6 6.6628 7.3092 0.2147 15 6 7.0498 8.6434 -0.4709 16 6 5.6569 9.2241 -0.8311 17 8 5.0837 9.8964 0.2920 18 6 5.7518 10.1524 -2.0144 19 1 6.7166 10.3927 -2.4362 20 6 4.6070 10.6951 -2.5584 21 7 3.4322 10.4022 -2.0450 22 14 4.7247 11.8464 -4.0247 23 1 4.6497 11.0577 -5.2807 24 1 3.6025 12.8180 -3.9825 25 1 6.0155 12.5788 -3.9766 26 6 4.8398 7.9649 -1.1895 27 6 3.9483 3.0062 0.0064 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 4.0337 -0.3904 -0.0006 34 1 6.4485 0.0646 -0.0002 35 1 7.2713 2.3815 -0.0005 36 1 6.6130 4.7842 0.4626 37 1 7.4850 6.5965 0.1491 38 1 6.3922 7.4825 1.2562 39 1 7.6423 8.4641 -1.3682 40 1 7.5795 9.2987 0.2206 41 1 4.1813 10.2109 0.1436 42 1 2.6268 10.7837 -2.4279 43 1 3.8206 8.0659 -0.8166 44 1 4.8268 7.8267 -2.2706 45 1 3.2503 3.8303 0.0114 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365491576.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:06 Heat of formation + Delta-G solvation = -84.612631 kcal Electronic energy + Delta-G solvation = -28248.574369 eV Core-core repulsion = 24231.188945 eV Total energy + Delta-G solvation = -4017.385424 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.63443 -39.68924 -38.41390 -37.29366 -34.60407 -34.33676 -33.04434 -32.25044 -31.25271 -30.51768 -29.23554 -27.78983 -25.76016 -25.14107 -23.25054 -22.81734 -22.17231 -20.01470 -19.57796 -19.51086 -17.98042 -17.33754 -17.10894 -16.25201 -15.93709 -15.59272 -15.45073 -15.37450 -14.96168 -14.53941 -14.33392 -14.25246 -13.79219 -13.51638 -13.32148 -13.00705 -12.89604 -12.59531 -12.47728 -12.27842 -12.14944 -11.92582 -11.73373 -11.56034 -11.49113 -11.37143 -11.06927 -10.86716 -10.72875 -10.51315 -10.38889 -10.19438 -9.76740 -9.71806 -9.36547 -9.04220 -8.70387 -8.36556 -8.27208 -7.83529 -6.30025 -4.39092 0.59071 1.29334 2.33072 2.83105 3.21071 3.28641 3.30874 3.43049 3.80929 3.86757 4.19818 4.27868 4.66053 4.77084 4.88640 4.89582 4.95561 4.97318 5.12270 5.26220 5.30254 5.38773 5.53599 5.57465 5.60898 5.69971 5.71757 5.77909 5.92068 5.98669 6.00813 6.16335 6.23832 6.30064 6.43207 6.45373 6.64181 6.81558 6.87233 6.96797 7.14833 7.25034 7.46819 7.50208 7.71082 7.99390 8.28271 8.64121 8.87606 9.26279 9.35540 10.77827 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015962 B = 0.002770 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.734619 B =10107.337282 C =11198.467123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.167 4.167 3 C 0.391 3.609 4 O -0.442 6.442 5 C -0.153 4.153 6 C -0.102 4.102 7 C -0.112 4.112 8 C -0.126 4.126 9 C 0.170 3.830 10 N -0.692 5.692 11 C 0.711 3.289 12 O -0.574 6.574 13 N -0.624 5.624 14 C 0.100 3.900 15 C -0.116 4.116 16 C 0.249 3.751 17 O -0.585 6.585 18 C -0.539 4.539 19 H 0.067 0.933 20 C 0.071 3.929 21 N -0.892 5.892 22 Si 0.904 3.096 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.120 3.880 27 C -0.064 4.064 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.405 0.595 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.383 0.617 42 H 0.271 0.729 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.658 -20.516 6.477 22.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.204 4.204 3 C 0.267 3.733 4 O -0.316 6.316 5 C -0.154 4.154 6 C -0.121 4.121 7 C -0.130 4.130 8 C -0.147 4.147 9 C 0.074 3.926 10 N -0.340 5.340 11 C 0.414 3.586 12 O -0.451 6.451 13 N -0.360 5.360 14 C -0.023 4.023 15 C -0.154 4.154 16 C 0.208 3.792 17 O -0.394 6.394 18 C -0.577 4.577 19 H 0.085 0.915 20 C -0.133 4.133 21 N -0.531 5.531 22 Si 0.731 3.269 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.002 4.002 27 C -0.085 4.085 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.241 0.759 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.233 0.767 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.852 -20.259 6.220 21.540 hybrid contribution 0.051 0.791 -0.898 1.198 sum 3.902 -19.468 5.322 20.556 Atomic orbital electron populations 1.21606 0.93693 1.01663 1.03305 1.21966 0.98298 0.95707 1.04473 1.22539 0.87849 0.91219 0.71654 1.90570 1.58212 1.47755 1.35113 1.20388 0.95041 0.93718 1.06272 1.21292 0.92933 0.98305 0.99574 1.20830 0.95431 0.95951 1.00836 1.21100 0.99292 0.91921 1.02379 1.17455 0.92539 0.83381 0.99268 1.42792 1.28217 1.05808 1.57165 1.15517 0.82880 0.79917 0.80321 1.90948 1.27864 1.80873 1.45410 1.48105 1.30958 1.04717 1.52231 1.22381 0.87204 0.96631 0.96102 1.22727 0.98676 0.93871 1.00077 1.19501 0.87061 0.87526 0.85076 1.86105 1.35150 1.77525 1.40576 1.21463 0.93708 1.28458 1.14063 0.91497 1.25081 0.95163 0.95899 0.97159 1.69690 0.97932 1.43914 1.41549 0.86390 0.77916 0.80351 0.82194 1.20407 1.20956 1.19695 1.22983 0.97142 0.82940 0.97107 1.21570 0.94781 0.97093 0.95069 0.92104 0.92083 0.91995 0.88372 0.88404 0.85244 0.85184 0.85369 0.75878 0.92525 0.91555 0.90394 0.90383 0.76656 0.91907 0.91552 0.91477 0.83307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.20 37.16 0.34 -0.93 16 2 C -0.17 -1.38 5.03 -27.88 -0.14 -1.52 16 3 C 0.39 5.11 7.12 -30.67 -0.22 4.89 16 4 O -0.44 -7.68 15.97 5.58 0.09 -7.59 16 5 C -0.15 -2.00 5.87 -105.08 -0.62 -2.62 16 6 C -0.10 -0.96 9.47 -39.09 -0.37 -1.33 16 7 C -0.11 -0.99 10.02 -39.68 -0.40 -1.39 16 8 C -0.13 -1.33 9.95 -39.29 -0.39 -1.72 16 9 C 0.17 2.44 6.27 -83.74 -0.53 1.92 16 10 N -0.69 -10.45 5.30 -14.26 -0.08 -10.53 16 11 C 0.71 14.32 8.23 -86.92 -0.72 13.60 16 12 O -0.57 -13.86 14.36 5.29 0.08 -13.78 16 13 N -0.62 -12.66 3.34 -175.97 -0.59 -13.24 16 14 C 0.10 1.66 6.64 -2.35 -0.02 1.64 16 15 C -0.12 -2.20 6.23 -24.58 -0.15 -2.36 16 16 C 0.25 5.90 0.85 -89.94 -0.08 5.83 16 17 O -0.58 -14.45 13.07 -35.23 -0.46 -14.91 16 18 C -0.54 -13.91 8.13 -34.44 -0.28 -14.19 16 19 H 0.07 1.70 7.78 -52.49 -0.41 1.29 16 20 C 0.07 1.84 5.27 -17.82 -0.09 1.75 16 21 N -0.89 -23.84 10.96 55.43 0.61 -23.23 16 22 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 C 0.12 2.90 5.23 -3.06 -0.02 2.88 16 27 C -0.06 -1.05 8.20 -38.90 -0.32 -1.37 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 30 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 31 H 0.10 0.62 8.09 -51.93 -0.42 0.20 16 32 H 0.10 0.57 8.09 -51.93 -0.42 0.15 16 33 H 0.13 0.77 7.04 -52.49 -0.37 0.40 16 34 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 35 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 36 H 0.41 4.75 7.28 -40.82 -0.30 4.45 16 37 H 0.06 0.72 7.23 -51.93 -0.38 0.34 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.08 1.43 8.05 -51.93 -0.42 1.01 16 40 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.38 9.76 7.45 45.56 0.34 10.10 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.07 1.77 7.91 -51.93 -0.41 1.36 16 44 H 0.07 1.78 7.81 -51.93 -0.41 1.38 16 45 H 0.15 3.00 6.01 -52.48 -0.32 2.68 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -32.53 373.36 -9.32 -41.85 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -5.59 Total: 15.28 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: -3.99 Total: 5.09 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: -0.06 Total: -47.00 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: -0.30 Total: -36.29 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.53 -9.32 -41.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365491576.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.765 kcal (2) G-P(sol) polarization free energy of solvation -32.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds