Wall clock time and date at job start Tue Mar 31 2020 16:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.46768 * 2 1 4 4 O 1.21251 * 120.00483 * 0.02562 * 3 2 1 5 5 C 1.47191 * 119.99531 * 180.02562 * 3 2 1 6 6 C 1.39887 * 120.14085 * 359.97438 * 5 3 2 7 7 C 1.37903 * 119.96501 * 180.02562 * 6 5 3 8 8 C 1.38302 * 120.24927 * 0.02562 * 7 6 5 9 9 C 1.38974 * 120.28373 * 0.02562 * 8 7 6 10 10 N 1.39981 * 119.98844 * 179.97438 * 9 8 7 11 11 C 1.34779 * 120.00469 * 146.76484 * 10 9 8 12 12 O 1.21582 * 119.99384 * 354.68577 * 11 10 9 13 13 N 1.34773 * 120.00022 * 174.68601 * 11 10 9 14 14 C 1.47745 * 125.82427 * 359.91160 * 13 11 10 15 15 C 1.54916 * 104.84000 * 155.82754 * 14 13 11 16 16 C 1.55150 * 101.58263 * 37.09164 * 15 14 13 17 17 O 1.42900 * 110.71824 * 82.86022 * 16 15 14 18 18 C 1.50703 * 110.87333 * 206.06388 * 16 15 14 19 19 H 1.08000 * 119.99537 * 355.06397 * 18 16 15 20 20 C 1.37872 * 120.00077 * 175.06920 * 18 16 15 21 21 N 1.31518 * 120.00181 * 359.97438 * 20 18 16 22 22 Si 1.86797 * 120.00159 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47301 * 89.99351 * 22 20 18 24 24 H 1.48493 * 109.47364 * 209.99686 * 22 20 18 25 25 H 1.48493 * 109.47058 * 329.99790 * 22 20 18 26 26 C 1.47025 * 125.64461 * 179.97438 * 13 11 10 27 27 C 1.38559 * 120.02761 * 0.23075 * 9 8 7 28 28 H 1.09001 * 109.47193 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46979 * 299.99708 * 1 2 3 30 30 H 1.08995 * 109.47593 * 59.99655 * 1 2 3 31 31 H 1.08998 * 109.47360 * 240.00082 * 2 1 3 32 32 H 1.08998 * 109.47326 * 119.99446 * 2 1 3 33 33 H 1.08002 * 120.01535 * 0.02562 * 6 5 3 34 34 H 1.07997 * 119.87267 * 179.97438 * 7 6 5 35 35 H 1.08006 * 119.85607 * 180.02562 * 8 7 6 36 36 H 0.97003 * 120.00062 * 326.76638 * 10 9 8 37 37 H 1.09002 * 110.29188 * 37.02099 * 14 13 11 38 38 H 1.08996 * 110.43486 * 274.70309 * 14 13 11 39 39 H 1.09005 * 111.00449 * 279.01786 * 15 14 13 40 40 H 1.09000 * 110.99894 * 155.17174 * 15 14 13 41 41 H 0.96706 * 113.99850 * 185.02452 * 17 16 15 42 42 H 0.96996 * 120.00459 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.88122 * 61.61170 * 26 13 11 44 44 H 1.08996 * 109.88731 * 300.59874 * 26 13 11 45 45 H 1.08004 * 120.12277 * 179.74567 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 1.2443 2.3425 0.0005 5 6 3.4794 1.6898 -0.0006 6 6 4.3910 0.6288 -0.0006 7 6 5.7460 0.8849 -0.0006 8 6 6.2087 2.1882 0.0000 9 6 5.3123 3.2502 0.0010 10 7 5.7874 4.5669 0.0021 11 6 5.0977 5.5328 -0.6366 12 8 4.1163 5.2453 -1.2941 13 7 5.4961 6.8171 -0.5465 14 6 6.6628 7.3092 0.2147 15 6 7.0498 8.6434 -0.4709 16 6 5.6569 9.2241 -0.8311 17 8 5.0837 9.8964 0.2920 18 6 5.7518 10.1524 -2.0144 19 1 6.7166 10.3927 -2.4362 20 6 4.6070 10.6951 -2.5584 21 7 3.4322 10.4022 -2.0450 22 14 4.7247 11.8464 -4.0247 23 1 4.6497 11.0577 -5.2807 24 1 3.6025 12.8180 -3.9825 25 1 6.0155 12.5788 -3.9766 26 6 4.8398 7.9649 -1.1895 27 6 3.9483 3.0062 0.0064 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 4.0337 -0.3904 -0.0006 34 1 6.4485 0.0646 -0.0002 35 1 7.2713 2.3815 -0.0005 36 1 6.6130 4.7842 0.4626 37 1 7.4850 6.5965 0.1491 38 1 6.3922 7.4825 1.2562 39 1 7.6423 8.4641 -1.3682 40 1 7.5795 9.2987 0.2206 41 1 4.1813 10.2109 0.1436 42 1 2.6268 10.7837 -2.4279 43 1 3.8206 8.0659 -0.8166 44 1 4.8268 7.8267 -2.2706 45 1 3.2503 3.8303 0.0114 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365491576.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:05 Heat of formation + Delta-G solvation = -108.556759 kcal Electronic energy + Delta-G solvation = -28249.612664 eV Core-core repulsion = 24231.188945 eV Total energy + Delta-G solvation = -4018.423719 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.92076 -40.89874 -39.73584 -38.76757 -36.20121 -35.83824 -34.26923 -33.85751 -32.14594 -32.03206 -30.47297 -29.53277 -27.10209 -26.54730 -24.69465 -23.71033 -23.31630 -21.54161 -21.09128 -20.67834 -19.38166 -18.99852 -18.52456 -17.39815 -17.24729 -16.91015 -16.60508 -16.50393 -16.45670 -16.25541 -15.74077 -15.37211 -14.96059 -14.83713 -14.82219 -14.52780 -14.34351 -13.92931 -13.69856 -13.53544 -13.34146 -13.15752 -12.92890 -12.87752 -12.75335 -12.58797 -12.42717 -12.35746 -12.30566 -12.12697 -12.04027 -11.61703 -11.28740 -11.21007 -10.72781 -10.69874 -10.34734 -9.97161 -9.77083 -9.10789 -8.29607 -6.46020 -0.33890 0.33565 1.35307 1.39300 1.40670 1.47418 1.51131 1.96810 2.34867 2.79765 2.85619 2.97193 3.04894 3.73935 3.88291 3.95856 4.01564 4.08571 4.14517 4.20071 4.27315 4.30841 4.32598 4.46215 4.50674 4.57581 4.65189 4.77426 4.95842 4.98328 4.98811 5.04254 5.06903 5.10739 5.26654 5.29579 5.32790 5.33062 5.38790 5.45700 5.48697 5.70404 5.93545 5.97917 6.06391 6.56599 6.61105 6.84018 7.22433 7.30709 7.35291 8.76421 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015962 B = 0.002770 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.734619 B =10107.337282 C =11198.467123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.157 4.157 3 C 0.383 3.617 4 O -0.508 6.508 5 C -0.175 4.175 6 C -0.076 4.076 7 C -0.100 4.100 8 C -0.107 4.107 9 C 0.135 3.865 10 N -0.670 5.670 11 C 0.707 3.293 12 O -0.626 6.626 13 N -0.630 5.630 14 C 0.103 3.897 15 C -0.109 4.109 16 C 0.233 3.767 17 O -0.586 6.586 18 C -0.555 4.555 19 H 0.071 0.929 20 C 0.022 3.978 21 N -0.918 5.918 22 Si 0.965 3.035 23 H -0.280 1.280 24 H -0.283 1.283 25 H -0.261 1.261 26 C 0.140 3.860 27 C -0.105 4.105 28 H 0.093 0.907 29 H 0.042 0.958 30 H 0.037 0.963 31 H 0.130 0.870 32 H 0.136 0.864 33 H 0.178 0.822 34 H 0.182 0.818 35 H 0.164 0.836 36 H 0.423 0.577 37 H 0.109 0.891 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.375 0.625 42 H 0.269 0.731 43 H 0.024 0.976 44 H 0.030 0.970 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.499 -24.562 7.069 26.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.193 4.193 3 C 0.264 3.736 4 O -0.387 6.387 5 C -0.177 4.177 6 C -0.095 4.095 7 C -0.118 4.118 8 C -0.128 4.128 9 C 0.041 3.959 10 N -0.320 5.320 11 C 0.409 3.591 12 O -0.507 6.507 13 N -0.366 5.366 14 C -0.018 4.018 15 C -0.146 4.146 16 C 0.193 3.807 17 O -0.394 6.394 18 C -0.593 4.593 19 H 0.089 0.911 20 C -0.179 4.179 21 N -0.557 5.557 22 Si 0.790 3.210 23 H -0.206 1.206 24 H -0.209 1.209 25 H -0.185 1.185 26 C 0.016 3.984 27 C -0.126 4.126 28 H 0.111 0.889 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.148 0.852 32 H 0.154 0.846 33 H 0.195 0.805 34 H 0.199 0.801 35 H 0.181 0.819 36 H 0.263 0.737 37 H 0.127 0.873 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.113 0.887 41 H 0.224 0.776 42 H 0.078 0.922 43 H 0.043 0.957 44 H 0.049 0.951 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.775 -24.359 6.863 26.474 hybrid contribution -1.138 1.899 -1.055 2.452 sum 6.637 -22.460 5.808 24.129 Atomic orbital electron populations 1.21640 0.94568 1.02997 1.01347 1.22066 0.97539 0.92234 1.07490 1.23503 0.87785 0.92999 0.69279 1.90554 1.59575 1.50119 1.38458 1.20625 0.96002 0.93543 1.07515 1.21842 0.92684 0.99079 0.95877 1.21484 0.95936 0.96388 0.97964 1.21542 1.00258 0.91372 0.99623 1.17753 0.92488 0.83710 1.01992 1.42410 1.28053 1.05354 1.56170 1.15744 0.82596 0.80464 0.80271 1.90917 1.30275 1.81789 1.47734 1.48010 1.31916 1.04086 1.52556 1.22584 0.87125 0.96633 0.95436 1.22725 0.95784 0.94936 1.01185 1.19738 0.89561 0.86747 0.84673 1.86093 1.34600 1.77632 1.41095 1.21835 0.93861 1.28764 1.14881 0.91084 1.25874 0.94942 0.97410 0.99632 1.69821 0.98390 1.44776 1.42700 0.85445 0.78199 0.78451 0.78905 1.20587 1.20854 1.18523 1.22435 0.95744 0.85341 0.94901 1.21336 0.95197 0.97271 0.98829 0.88870 0.93888 0.94366 0.85234 0.84647 0.80452 0.80081 0.81865 0.73705 0.87257 0.90828 0.89451 0.88713 0.77632 0.92181 0.95730 0.95117 0.89272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.20 71.98 0.66 -1.83 16 2 C -0.16 -2.18 5.03 29.85 0.15 -2.03 16 3 C 0.38 10.34 7.12 28.04 0.20 10.54 16 4 O -0.51 -19.76 15.97 -2.94 -0.05 -19.81 16 5 C -0.18 -4.55 5.87 -20.16 -0.12 -4.67 16 6 C -0.08 -1.07 9.47 22.59 0.21 -0.86 16 7 C -0.10 -1.15 10.02 22.21 0.22 -0.93 16 8 C -0.11 -1.82 9.95 22.46 0.22 -1.59 16 9 C 0.14 3.84 6.27 38.09 0.24 4.08 16 10 N -0.67 -20.16 5.30 -317.31 -1.68 -21.84 16 11 C 0.71 30.06 8.23 179.05 1.47 31.53 16 12 O -0.63 -33.28 14.36 -3.97 -0.06 -33.34 16 13 N -0.63 -26.52 3.34 -828.93 -2.77 -29.29 16 14 C 0.10 3.28 6.64 86.80 0.58 3.85 16 15 C -0.11 -4.01 6.23 31.99 0.20 -3.81 16 16 C 0.23 11.41 0.85 -10.35 -0.01 11.40 16 17 O -0.59 -30.07 13.07 -148.98 -1.95 -32.02 16 18 C -0.56 -29.39 8.13 25.60 0.21 -29.18 16 19 H 0.07 3.61 7.78 -2.91 -0.02 3.59 16 20 C 0.02 1.19 5.27 84.65 0.45 1.64 16 21 N -0.92 -51.83 10.96 21.45 0.24 -51.59 16 22 Si 0.96 43.00 29.54 68.60 2.03 45.02 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 25 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 26 C 0.14 7.23 5.23 86.73 0.45 7.69 16 27 C -0.11 -3.68 8.20 22.71 0.19 -3.49 16 28 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.04 0.86 8.10 -2.39 -0.02 0.84 16 30 H 0.04 0.81 8.10 -2.39 -0.02 0.79 16 31 H 0.13 1.06 8.09 -2.39 -0.02 1.04 16 32 H 0.14 0.93 8.09 -2.39 -0.02 0.91 16 33 H 0.18 0.80 7.04 -2.91 -0.02 0.78 16 34 H 0.18 0.44 8.06 -2.91 -0.02 0.41 16 35 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 36 H 0.42 8.96 7.28 -92.71 -0.68 8.29 16 37 H 0.11 2.34 7.23 -2.39 -0.02 2.32 16 38 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.09 3.05 8.05 -2.38 -0.02 3.03 16 40 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.37 20.31 7.45 -74.05 -0.55 19.76 16 42 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 43 H 0.02 1.43 7.91 -2.39 -0.02 1.42 16 44 H 0.03 1.76 7.81 -2.39 -0.02 1.74 16 45 H 0.09 4.16 6.01 -2.91 -0.02 4.14 16 Total: -1.00 -84.48 373.36 0.90 -83.58 By element: Atomic # 1 Polarization: 37.15 SS G_CDS: -0.19 Total: 36.96 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: 5.33 Total: 22.33 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -4.21 Total: -102.72 kcal Atomic # 8 Polarization: -83.12 SS G_CDS: -2.05 Total: -85.17 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -84.48 0.90 -83.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365491576.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.973 kcal (2) G-P(sol) polarization free energy of solvation -84.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds