Wall clock time and date at job start Tue Mar 31 2020 17:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 110.66711 * 2 1 4 4 C 1.54698 * 110.75167 * 236.78338 * 2 1 3 5 5 C 1.51657 * 101.94183 * 216.17707 * 4 2 1 6 6 C 1.37706 * 132.10086 * 195.55380 * 5 4 2 7 7 C 1.38905 * 119.92492 * 179.53179 * 6 5 4 8 8 N 1.40157 * 120.18785 * 180.02562 * 7 6 5 9 9 C 1.34777 * 120.00176 * 213.07330 * 8 7 6 10 10 O 1.21591 * 119.99887 * 5.32150 * 9 8 7 11 11 N 1.34770 * 120.00066 * 185.31663 * 9 8 7 12 12 C 1.47024 * 125.64772 * 359.69983 * 11 9 8 13 13 C 1.54336 * 107.26688 * 178.84681 * 12 11 9 14 14 C 1.55154 * 103.01998 * 338.13703 * 13 12 11 15 15 O 1.42893 * 111.00682 * 277.23593 * 14 13 12 16 16 C 1.50703 * 111.00541 * 153.37730 * 14 13 12 17 17 H 1.07998 * 119.99649 * 6.35170 * 16 14 13 18 18 C 1.37878 * 119.99990 * 186.35281 * 16 14 13 19 19 N 1.31514 * 120.00210 * 359.97438 * 18 16 14 20 20 Si 1.86800 * 119.99690 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47194 * 90.00101 * 20 18 16 22 22 H 1.48499 * 109.46876 * 209.99556 * 20 18 16 23 23 H 1.48502 * 109.47237 * 329.99619 * 20 18 16 24 24 C 1.47427 * 125.64945 * 180.02562 * 11 9 8 25 25 C 1.38851 * 119.62341 * 359.97438 * 7 6 5 26 26 C 1.37871 * 120.27715 * 0.13812 * 25 7 6 27 27 C 1.38888 * 107.04916 * 15.38406 * 5 4 2 28 28 O 1.36244 * 111.20196 * 1.10049 * 27 5 4 29 29 H 1.09005 * 109.47073 * 183.21651 * 1 2 3 30 30 H 1.09001 * 109.47446 * 303.21427 * 1 2 3 31 31 H 1.09000 * 109.47644 * 63.21854 * 1 2 3 32 32 H 1.09001 * 110.93482 * 98.01314 * 4 2 1 33 33 H 1.08998 * 110.93708 * 334.34277 * 4 2 1 34 34 H 1.07998 * 120.03437 * 359.53522 * 6 5 4 35 35 H 0.96997 * 119.99679 * 33.08379 * 8 7 6 36 36 H 1.09008 * 109.88327 * 298.38879 * 12 11 9 37 37 H 1.08995 * 109.88675 * 59.55418 * 12 11 9 38 38 H 1.08996 * 110.84901 * 219.66693 * 13 12 11 39 39 H 1.09006 * 110.66580 * 96.51967 * 13 12 11 40 40 H 0.96699 * 114.00107 * 173.65063 * 15 14 13 41 41 H 0.97001 * 120.00369 * 180.02562 * 19 18 16 42 42 H 1.08997 * 110.36651 * 322.93213 * 24 11 9 43 43 H 1.08996 * 110.36375 * 85.14791 * 24 11 9 44 44 H 1.08000 * 119.86393 * 180.41646 * 25 7 6 45 45 H 1.08000 * 119.83447 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0781 -0.7925 -1.2103 5 6 3.3092 -1.4535 -0.6209 6 6 4.3974 -2.0641 -1.2034 7 6 5.4073 -2.5876 -0.4061 8 7 6.5176 -3.2098 -0.9931 9 6 7.1193 -4.2422 -0.3698 10 8 6.6426 -4.6966 0.6523 11 7 8.2493 -4.7710 -0.8795 12 6 8.9268 -4.3251 -2.1058 13 6 10.1874 -5.1990 -2.2763 14 6 10.4503 -5.7178 -0.8379 15 8 11.1660 -4.7504 -0.0672 16 6 11.1834 -7.0342 -0.8639 17 1 11.5414 -7.4344 -1.8010 18 6 11.3970 -7.7276 0.3085 19 7 10.9615 -7.2400 1.4496 20 14 12.3064 -9.3590 0.2762 21 1 13.7620 -9.1179 0.4447 22 1 11.8163 -10.2208 1.3817 23 1 12.0638 -10.0353 -1.0235 24 6 9.0071 -5.8967 -0.3034 25 6 5.3111 -2.4900 0.9756 26 6 4.2189 -1.8799 1.5550 27 6 3.2015 -1.3569 0.7604 28 8 2.0430 -0.7379 1.1222 29 1 -0.3633 -1.0261 0.0577 30 1 -0.3634 0.5629 0.8598 31 1 -0.3634 0.4630 -0.9174 32 1 2.3488 -0.1210 -2.0251 33 1 1.3580 -1.5389 -1.5455 34 1 4.4656 -2.1359 -2.2788 35 1 6.8530 -2.8972 -1.8479 36 1 8.2653 -4.4541 -2.9626 37 1 9.2140 -3.2780 -2.0109 38 1 11.0279 -4.6024 -2.6307 39 1 9.9914 -6.0286 -2.9557 40 1 11.2689 -4.9878 0.8645 41 1 11.1121 -7.7277 2.2745 42 1 8.9965 -5.8435 0.7853 43 1 8.5908 -6.8461 -0.6402 44 1 6.0973 -2.8897 1.5990 45 1 4.1512 -1.8083 2.6305 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001366895429.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:55 Heat of formation + Delta-G solvation = -75.144404 kcal Electronic energy + Delta-G solvation = -28243.108124 eV Core-core repulsion = 24226.133273 eV Total energy + Delta-G solvation = -4016.974850 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.25915 -40.05876 -38.12939 -36.88117 -34.38161 -33.98686 -33.30280 -32.25614 -31.11357 -30.31468 -28.93431 -27.76729 -26.59657 -25.10624 -23.07484 -22.42237 -21.87499 -21.65336 -19.71941 -19.45869 -17.97119 -17.63167 -17.10255 -16.90685 -16.66430 -15.60644 -15.21544 -15.06650 -14.69156 -14.42671 -14.27744 -13.91924 -13.60036 -13.42781 -13.29237 -13.10338 -13.01779 -12.84387 -12.60234 -12.50064 -12.36624 -12.14744 -11.69292 -11.60164 -11.48364 -11.22872 -11.05547 -10.87837 -10.74492 -10.66135 -10.48986 -10.23825 -9.79577 -9.61728 -9.40498 -8.87469 -8.72423 -8.41741 -7.92437 -7.50256 -6.29888 -4.39843 1.31127 1.33979 2.89195 3.13576 3.20278 3.27849 3.29810 3.44492 3.86788 4.18314 4.24543 4.27790 4.35860 4.64600 4.79278 4.90119 4.96941 5.08857 5.17474 5.28239 5.32970 5.39382 5.45789 5.51837 5.56848 5.68718 5.69488 5.74974 5.88096 5.95014 5.96794 6.05266 6.33555 6.38075 6.45059 6.54622 6.65978 6.82553 6.85873 6.88080 7.16423 7.23409 7.27076 7.51071 7.71894 7.99678 8.34781 8.63975 8.94212 9.27101 9.35548 10.77174 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031096 B = 0.002301 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.229812 B =12166.200994 C =12606.994165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.076 3.924 3 H 0.084 0.916 4 C -0.103 4.103 5 C -0.158 4.158 6 C -0.105 4.105 7 C 0.155 3.845 8 N -0.688 5.688 9 C 0.714 3.286 10 O -0.579 6.579 11 N -0.622 5.622 12 C 0.101 3.899 13 C -0.116 4.116 14 C 0.249 3.751 15 O -0.582 6.582 16 C -0.538 4.538 17 H 0.067 0.933 18 C 0.071 3.929 19 N -0.891 5.891 20 Si 0.904 3.096 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.112 3.888 25 C -0.085 4.085 26 C -0.114 4.114 27 C 0.079 3.921 28 O -0.305 6.305 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.125 0.875 35 H 0.403 0.597 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.382 0.618 41 H 0.271 0.729 42 H 0.087 0.913 43 H 0.059 0.941 44 H 0.148 0.852 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.478 13.847 -6.842 21.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.020 3.980 3 H 0.102 0.898 4 C -0.140 4.140 5 C -0.159 4.159 6 C -0.126 4.126 7 C 0.059 3.941 8 N -0.337 5.337 9 C 0.417 3.583 10 O -0.456 6.456 11 N -0.358 5.358 12 C -0.022 4.022 13 C -0.153 4.153 14 C 0.208 3.792 15 O -0.391 6.391 16 C -0.577 4.577 17 H 0.085 0.915 18 C -0.132 4.132 19 N -0.530 5.530 20 Si 0.731 3.269 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.009 4.009 25 C -0.105 4.105 26 C -0.133 4.133 27 C 0.034 3.966 28 O -0.219 6.219 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.143 0.857 35 H 0.239 0.761 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.231 0.769 41 H 0.081 0.919 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.165 0.835 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.910 13.749 -6.239 21.934 hybrid contribution 0.610 -1.065 -0.075 1.229 sum -15.300 12.684 -6.314 20.853 Atomic orbital electron populations 1.21876 0.92302 1.03509 1.02954 1.23319 0.95548 0.95404 0.83697 0.89816 1.21823 0.94670 0.99197 0.98284 1.20388 0.96985 1.04742 0.93824 1.19867 0.91765 1.01550 0.99423 1.17278 0.87875 0.96897 0.92041 1.42684 1.31230 1.34596 1.25140 1.15492 0.80141 0.79450 0.83255 1.90912 1.65670 1.63889 1.25135 1.47995 1.23746 1.36824 1.27285 1.22004 0.94920 0.98901 0.86382 1.22591 0.95001 0.98652 0.99102 1.19633 0.86511 0.87139 0.85908 1.86103 1.78120 1.48776 1.26101 1.21438 1.37564 1.04419 0.94253 0.91493 1.25086 0.94564 0.98247 0.95350 1.69711 1.45239 1.39563 0.98456 0.86400 0.79844 0.82712 0.77928 1.20394 1.20997 1.19709 1.23229 0.92079 0.85238 1.00364 1.21015 0.98511 0.97248 0.93772 1.20144 0.91723 1.01663 0.99816 1.19451 0.87537 0.96965 0.92673 1.86850 1.34709 1.62950 1.37433 0.91389 0.91393 0.90419 0.89281 0.89195 0.85673 0.76136 0.92944 0.92367 0.90656 0.90328 0.76858 0.91941 0.89430 0.92236 0.83477 0.85219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.59 37.15 0.36 -0.57 16 2 C 0.08 0.66 4.25 -25.84 -0.11 0.55 16 3 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.10 -0.87 6.64 -26.52 -0.18 -1.05 16 5 C -0.16 -1.91 6.27 -104.10 -0.65 -2.56 16 6 C -0.10 -1.30 9.95 -39.53 -0.39 -1.70 16 7 C 0.15 2.33 6.29 -83.58 -0.53 1.80 16 8 N -0.69 -10.60 5.31 -14.17 -0.08 -10.68 16 9 C 0.71 14.21 8.23 -86.92 -0.72 13.50 16 10 O -0.58 -13.54 14.29 5.29 0.08 -13.47 16 11 N -0.62 -12.47 3.33 -176.21 -0.59 -13.06 16 12 C 0.10 1.67 6.16 -3.06 -0.02 1.66 16 13 C -0.12 -2.19 6.13 -24.89 -0.15 -2.34 16 14 C 0.25 5.84 0.87 -89.61 -0.08 5.76 16 15 O -0.58 -14.46 13.16 -35.23 -0.46 -14.92 16 16 C -0.54 -13.69 8.27 -34.44 -0.28 -13.97 16 17 H 0.07 1.67 7.79 -52.49 -0.41 1.26 16 18 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 19 N -0.89 -23.48 10.69 55.43 0.59 -22.89 16 20 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 24 C 0.11 2.65 5.38 -2.51 -0.01 2.63 16 25 C -0.08 -1.36 8.63 -39.49 -0.34 -1.70 16 26 C -0.11 -1.63 10.06 -39.33 -0.40 -2.03 16 27 C 0.08 1.07 7.03 -38.95 -0.27 0.80 16 28 O -0.30 -3.83 10.82 -20.52 -0.22 -4.05 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.70 7.93 -51.93 -0.41 0.29 16 34 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.40 4.95 7.82 -40.82 -0.32 4.63 16 36 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 39 H 0.08 1.40 8.03 -51.93 -0.42 0.98 16 40 H 0.38 9.77 7.57 45.56 0.34 10.12 16 41 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.09 2.33 7.33 -51.93 -0.38 1.95 16 43 H 0.06 1.45 8.03 -51.93 -0.42 1.04 16 44 H 0.15 2.65 6.42 -52.49 -0.34 2.31 16 45 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 367.99 15.07 5.55 5.55 Total: -1.00 -30.40 367.99 -9.73 -40.14 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -5.71 Total: 15.77 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -3.87 Total: 2.51 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -0.07 Total: -46.62 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -0.61 Total: -32.44 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.40 -9.73 -40.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366895429.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.009 kcal (2) G-P(sol) polarization free energy of solvation -30.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds