Wall clock time and date at job start Tue Mar 31 2020 17:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.66618 * 2 1 4 4 C 1.54701 * 110.74561 * 236.78772 * 2 1 3 5 5 C 1.51662 * 101.93224 * 216.14956 * 4 2 1 6 6 C 1.37704 * 132.10295 * 195.78847 * 5 4 2 7 7 C 1.38907 * 119.92737 * 179.45939 * 6 5 4 8 8 N 1.40152 * 120.19306 * 179.90910 * 7 6 5 9 9 C 1.34776 * 119.99317 * 35.05662 * 8 7 6 10 10 O 1.21583 * 120.00504 * 355.35378 * 9 8 7 11 11 N 1.34779 * 119.99282 * 175.35582 * 9 8 7 12 12 C 1.47015 * 125.65043 * 0.02562 * 11 9 8 13 13 C 1.54330 * 107.27068 * 181.03881 * 12 11 9 14 14 C 1.55152 * 102.94206 * 22.19562 * 13 12 11 15 15 O 1.42897 * 111.00539 * 82.57122 * 14 13 12 16 16 C 1.50699 * 111.00449 * 206.41946 * 14 13 12 17 17 H 1.08003 * 120.00123 * 0.02562 * 16 14 13 18 18 C 1.37877 * 119.99842 * 179.97438 * 16 14 13 19 19 N 1.31510 * 120.00125 * 0.02562 * 18 16 14 20 20 Si 1.86802 * 119.99795 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47100 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47107 * 120.00534 * 20 18 16 23 23 H 1.48509 * 109.47014 * 240.00529 * 20 18 16 24 24 C 1.47429 * 125.64574 * 179.97438 * 11 9 8 25 25 C 1.38861 * 119.61601 * 0.18190 * 7 6 5 26 26 C 1.37866 * 120.27878 * 359.62038 * 25 7 6 27 27 C 1.38873 * 107.04300 * 15.49098 * 5 4 2 28 28 O 1.36240 * 111.21737 * 0.93871 * 27 5 4 29 29 H 1.09001 * 109.47181 * 183.21851 * 1 2 3 30 30 H 1.09002 * 109.46650 * 303.21336 * 1 2 3 31 31 H 1.08991 * 109.47607 * 63.21192 * 1 2 3 32 32 H 1.09004 * 110.94106 * 97.99463 * 4 2 1 33 33 H 1.08993 * 110.94062 * 334.31089 * 4 2 1 34 34 H 1.08000 * 120.03563 * 359.43151 * 6 5 4 35 35 H 0.96994 * 119.99744 * 215.05060 * 8 7 6 36 36 H 1.08999 * 109.88377 * 61.62726 * 12 11 9 37 37 H 1.08997 * 109.88888 * 300.45817 * 12 11 9 38 38 H 1.09003 * 110.71707 * 140.55881 * 13 12 11 39 39 H 1.09001 * 110.72216 * 263.82802 * 13 12 11 40 40 H 0.96704 * 114.00525 * 179.97438 * 15 14 13 41 41 H 0.97002 * 120.00303 * 179.97438 * 19 18 16 42 42 H 1.08998 * 110.36708 * 37.05189 * 24 11 9 43 43 H 1.08997 * 110.45883 * 274.77806 * 24 11 9 44 44 H 1.08006 * 119.85641 * 179.87946 * 25 7 6 45 45 H 1.08000 * 119.83276 * 180.32410 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 6 2.0780 -0.7924 -1.2104 5 6 3.3095 -1.4529 -0.6212 6 6 4.3998 -2.0596 -1.2038 7 6 5.4102 -2.5823 -0.4066 8 7 6.5215 -3.2026 -0.9936 9 6 7.0117 -2.7416 -2.1614 10 8 6.4405 -1.8429 -2.7481 11 7 8.1351 -3.2771 -2.6787 12 6 8.9221 -4.3636 -2.0775 13 6 10.1277 -4.6237 -3.0052 14 6 10.2614 -3.2884 -3.7839 15 8 10.9876 -2.3217 -3.0222 16 6 10.9063 -3.5091 -5.1279 17 1 11.2044 -4.5031 -5.4271 18 6 11.1148 -2.4422 -5.9760 19 7 10.7513 -1.2319 -5.6118 20 14 11.9136 -2.7159 -7.6423 21 1 12.2259 -4.1579 -7.8106 22 1 10.9822 -2.2830 -8.7148 23 1 13.1674 -1.9243 -7.7262 24 6 8.7777 -2.8710 -3.9419 25 6 5.3101 -2.4916 0.9754 26 6 4.2189 -1.8799 1.5547 27 6 3.2008 -1.3582 0.7600 28 8 2.0431 -0.7378 1.1221 29 1 -0.3633 -1.0260 0.0577 30 1 -0.3633 0.5629 0.8598 31 1 -0.3634 0.4631 -0.9173 32 1 2.3484 -0.1210 -2.0254 33 1 1.3581 -1.5391 -1.5453 34 1 4.4691 -2.1294 -2.2793 35 1 6.9377 -3.9635 -0.5594 36 1 8.3127 -5.2641 -2.0006 37 1 9.2723 -4.0650 -1.0895 38 1 11.0272 -4.8218 -2.4222 39 1 9.9192 -5.4484 -3.6867 40 1 11.0970 -1.4708 -3.4684 41 1 10.8983 -0.4812 -6.2083 42 1 8.6995 -1.7923 -4.0777 43 1 8.3244 -3.3925 -4.7849 44 1 6.0925 -2.8984 1.5990 45 1 4.1509 -1.8087 2.6302 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001366895430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:58 Heat of formation + Delta-G solvation = -95.717088 kcal Electronic energy + Delta-G solvation = -28361.058933 eV Core-core repulsion = 24343.191984 eV Total energy + Delta-G solvation = -4017.866949 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -42.25171 -41.44784 -39.57286 -38.27643 -36.14171 -35.32712 -34.15826 -34.11899 -32.03417 -31.86373 -30.02701 -29.45570 -27.62921 -26.86294 -24.59267 -23.46337 -22.66466 -22.60222 -21.46682 -21.00255 -19.45746 -18.99693 -18.58699 -18.07482 -17.65203 -17.05345 -16.88069 -16.47802 -16.19606 -15.92939 -15.30047 -15.25667 -14.89614 -14.72019 -14.57170 -14.35933 -14.16284 -13.85651 -13.83493 -13.52834 -13.41880 -13.37065 -13.30144 -13.05908 -12.87279 -12.53669 -12.32186 -12.24845 -12.19121 -12.17529 -12.10141 -11.76290 -11.28781 -11.19086 -10.83633 -10.66192 -10.34148 -9.87709 -9.52292 -8.66640 -8.26509 -6.43311 0.21561 0.33056 1.39996 1.44250 1.50839 1.55479 1.98738 2.28014 2.37606 2.72223 2.92535 2.99946 3.44606 3.56685 3.79029 3.90614 3.99987 4.09842 4.15354 4.17272 4.22368 4.29294 4.33304 4.58734 4.60199 4.64540 4.68900 4.72563 4.73995 4.93832 4.98194 5.03135 5.05054 5.08794 5.19543 5.22832 5.33256 5.38863 5.40132 5.42181 5.45593 5.73220 5.76430 6.00245 6.09761 6.22293 6.64281 6.92524 7.29534 7.38512 7.43606 8.79187 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.022129 B = 0.002508 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.976251 B =11162.940743 C =11996.906983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.073 3.927 3 H 0.090 0.910 4 C -0.107 4.107 5 C -0.171 4.171 6 C -0.095 4.095 7 C 0.126 3.874 8 N -0.667 5.667 9 C 0.709 3.291 10 O -0.625 6.625 11 N -0.626 5.626 12 C 0.102 3.898 13 C -0.111 4.111 14 C 0.232 3.768 15 O -0.590 6.590 16 C -0.553 4.553 17 H 0.072 0.928 18 C 0.024 3.976 19 N -0.918 5.918 20 Si 0.966 3.034 21 H -0.262 1.262 22 H -0.284 1.284 23 H -0.280 1.280 24 C 0.125 3.875 25 C -0.103 4.103 26 C -0.116 4.116 27 C 0.073 3.927 28 O -0.314 6.314 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.422 0.578 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.377 0.623 41 H 0.270 0.730 42 H 0.038 0.962 43 H 0.046 0.954 44 H 0.167 0.833 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.429 -3.684 13.462 20.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.018 3.982 3 H 0.108 0.892 4 C -0.144 4.144 5 C -0.173 4.173 6 C -0.115 4.115 7 C 0.031 3.969 8 N -0.317 5.317 9 C 0.412 3.588 10 O -0.506 6.506 11 N -0.362 5.362 12 C -0.019 4.019 13 C -0.148 4.148 14 C 0.191 3.809 15 O -0.400 6.400 16 C -0.591 4.591 17 H 0.090 0.910 18 C -0.177 4.177 19 N -0.558 5.558 20 Si 0.791 3.209 21 H -0.186 1.186 22 H -0.210 1.210 23 H -0.206 1.206 24 C 0.001 3.999 25 C -0.124 4.124 26 C -0.135 4.135 27 C 0.027 3.973 28 O -0.229 6.229 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.132 0.868 35 H 0.261 0.739 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.228 0.772 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.184 0.816 45 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.937 -3.350 13.621 21.231 hybrid contribution 0.789 0.544 -1.804 2.042 sum -15.149 -2.806 11.817 19.416 Atomic orbital electron populations 1.21885 0.89891 1.03729 1.04426 1.23591 0.97285 0.95190 0.82156 0.89183 1.21959 0.93777 0.99675 0.98966 1.20864 0.97591 1.04170 0.94628 1.20380 0.91614 0.99245 1.00286 1.17552 0.87057 1.00004 0.92309 1.42301 1.31397 1.35381 1.22571 1.15687 0.80324 0.81475 0.81309 1.90852 1.62010 1.34700 1.63020 1.47853 1.24403 1.38859 1.25060 1.22218 0.92913 0.89438 0.97360 1.22611 0.97419 0.96709 0.98082 1.19875 0.85299 0.86239 0.89490 1.86049 1.77695 1.27748 1.48463 1.21867 1.40849 0.95109 1.01294 0.90975 1.25856 0.94868 0.94848 1.02106 1.69691 1.47536 0.99892 1.38725 0.85387 0.77891 0.78723 0.78905 1.18592 1.20990 1.20617 1.22774 0.95455 0.98704 0.82962 1.20872 0.99251 1.00570 0.91664 1.20320 0.91066 1.01285 1.00860 1.19753 0.88167 0.96716 0.92635 1.86806 1.34335 1.63004 1.38757 0.91568 0.90615 0.88388 0.88864 0.87993 0.86779 0.73933 0.88702 0.90511 0.89501 0.89081 0.77242 0.92045 0.94306 0.93616 0.81575 0.82377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.59 71.98 0.69 -1.03 16 2 C 0.07 1.36 4.25 31.17 0.13 1.49 16 3 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 4 C -0.11 -2.29 6.64 30.73 0.20 -2.09 16 5 C -0.17 -4.83 6.27 -19.53 -0.12 -4.95 16 6 C -0.09 -3.11 8.69 22.30 0.19 -2.92 16 7 C 0.13 3.70 6.31 38.12 0.24 3.94 16 8 N -0.67 -19.87 5.31 -316.99 -1.68 -21.55 16 9 C 0.71 28.64 8.34 179.05 1.49 30.13 16 10 O -0.62 -30.62 14.04 -3.98 -0.06 -30.67 16 11 N -0.63 -25.08 3.33 -829.71 -2.76 -27.84 16 12 C 0.10 3.13 6.15 86.73 0.53 3.67 16 13 C -0.11 -3.98 6.13 31.78 0.19 -3.78 16 14 C 0.23 11.01 0.89 -10.14 -0.01 11.00 16 15 O -0.59 -30.40 13.18 -148.98 -1.96 -32.36 16 16 C -0.55 -28.22 8.25 25.60 0.21 -28.00 16 17 H 0.07 3.53 7.76 -2.91 -0.02 3.51 16 18 C 0.02 1.22 5.29 84.66 0.45 1.67 16 19 N -0.92 -50.00 10.71 21.45 0.23 -49.77 16 20 Si 0.97 41.38 29.54 68.60 2.03 43.40 16 21 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 24 C 0.12 6.06 5.63 86.86 0.49 6.55 16 25 C -0.10 -2.30 9.94 22.33 0.22 -2.07 16 26 C -0.12 -2.56 10.06 22.44 0.23 -2.33 16 27 C 0.07 1.89 7.03 22.68 0.16 2.04 16 28 O -0.31 -7.51 10.82 -96.29 -1.04 -8.55 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.10 1.90 7.93 -2.39 -0.02 1.88 16 34 H 0.11 4.42 6.23 -2.91 -0.02 4.40 16 35 H 0.42 9.22 7.82 -92.71 -0.72 8.50 16 36 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 39 H 0.09 3.02 8.01 -2.39 -0.02 3.00 16 40 H 0.38 20.70 6.93 -74.05 -0.51 20.18 16 41 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 42 H 0.04 2.20 7.64 -2.39 -0.02 2.18 16 43 H 0.05 2.29 8.03 -2.39 -0.02 2.27 16 44 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 45 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -69.35 367.64 -0.15 -69.50 By element: Atomic # 1 Polarization: 44.73 SS G_CDS: -0.21 Total: 44.53 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 5.31 Total: 13.31 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -4.21 Total: -99.16 kcal Atomic # 8 Polarization: -68.52 SS G_CDS: -3.06 Total: -71.58 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Total: -69.35 -0.15 -69.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001366895430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.218 kcal (2) G-P(sol) polarization free energy of solvation -69.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds