Wall clock time and date at job start Tue Mar 31 2020 18:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42890 * 114.00034 * 2 1 4 4 C 1.50706 * 109.47414 * 180.02562 * 3 2 1 5 5 O 1.21284 * 119.99614 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00407 * 179.97438 * 4 3 2 7 7 C 1.46541 * 124.97655 * 359.97438 * 6 4 3 8 8 C 1.53745 * 105.17925 * 180.02562 * 7 6 4 9 9 C 1.51211 * 104.57270 * 359.97438 * 8 7 6 10 10 C 1.38476 * 108.58812 * 0.02562 * 9 8 7 11 11 C 1.39656 * 119.08608 * 179.97438 * 10 9 8 12 12 C 1.37921 * 120.42916 * 0.02562 * 11 10 9 13 13 C 1.38134 * 120.30652 * 359.95140 * 12 11 10 14 14 C 1.38759 * 130.98225 * 179.97438 * 9 8 7 15 15 N 1.39922 * 119.99829 * 0.03396 * 14 9 8 16 16 C 1.34779 * 119.99711 * 204.81871 * 15 14 9 17 17 O 1.21289 * 120.00222 * 5.53417 * 16 15 14 18 18 C 1.50707 * 119.99926 * 185.53130 * 16 15 14 19 19 H 1.09001 * 109.46721 * 300.00067 * 18 16 15 20 20 C 1.52998 * 109.47078 * 60.00048 * 18 16 15 21 21 C 1.50695 * 109.47003 * 180.02562 * 18 16 15 22 22 H 1.08005 * 120.00415 * 0.02562 * 21 18 16 23 23 C 1.37882 * 119.99992 * 180.02562 * 21 18 16 24 24 N 1.31509 * 119.99766 * 359.97438 * 23 21 18 25 25 Si 1.86795 * 120.00025 * 180.02562 * 23 21 18 26 26 H 1.48501 * 109.47416 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47431 * 119.99673 * 25 23 21 28 28 H 1.48509 * 109.46732 * 239.99720 * 25 23 21 29 29 H 1.08999 * 109.47649 * 59.99833 * 1 2 3 30 30 H 1.08997 * 109.47206 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46632 * 299.99467 * 1 2 3 32 32 H 1.09005 * 109.47406 * 60.00637 * 3 2 1 33 33 H 1.09000 * 109.47907 * 300.00515 * 3 2 1 34 34 H 1.09001 * 110.29851 * 298.94061 * 7 6 4 35 35 H 1.09002 * 110.30343 * 61.08971 * 7 6 4 36 36 H 1.08997 * 110.41572 * 118.77197 * 8 7 6 37 37 H 1.09005 * 110.40917 * 241.22389 * 8 7 6 38 38 H 1.07998 * 119.78485 * 179.97438 * 11 10 9 39 39 H 1.08007 * 119.84386 * 179.97438 * 12 11 10 40 40 H 1.07997 * 120.12411 * 179.97438 * 13 12 11 41 41 H 0.96999 * 120.00602 * 24.81730 * 15 14 9 42 42 H 1.09005 * 109.47030 * 59.99717 * 20 18 16 43 43 H 1.09000 * 109.47220 * 179.97438 * 20 18 16 44 44 H 1.08999 * 109.47469 * 300.00623 * 20 18 16 45 45 H 0.97004 * 120.00421 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 8 4.0341 0.0915 -0.0015 6 7 4.2765 2.2968 -0.0013 7 6 3.7635 3.6694 -0.0019 8 6 5.0125 4.5660 -0.0032 9 6 6.1749 3.5990 -0.0024 10 6 5.6749 2.3077 -0.0016 11 6 6.5679 1.2339 -0.0013 12 6 7.9289 1.4572 -0.0014 13 6 8.4237 2.7469 -0.0027 14 6 7.5444 3.8223 -0.0034 15 7 8.0398 5.1309 -0.0048 16 6 9.2689 5.3856 -0.4957 17 8 9.9052 4.5003 -1.0272 18 6 9.8527 6.7706 -0.3843 19 1 9.2089 7.4792 -0.9054 20 6 9.9551 7.1637 1.0908 21 6 11.2254 6.7885 -1.0059 22 1 11.6341 5.8874 -1.4388 23 6 11.9597 7.9555 -1.0220 24 7 11.4619 9.0529 -0.4954 25 14 13.6608 7.9779 -1.7932 26 1 13.9872 6.6252 -2.3118 27 1 13.6851 8.9559 -2.9103 28 1 14.6630 8.3703 -0.7699 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5137 0.8900 32 1 1.6887 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.1676 3.8500 -0.8966 35 1 3.1682 3.8512 0.8929 36 1 5.0342 5.1865 -0.8990 37 1 5.0349 5.1878 0.8919 38 1 6.1902 0.2221 -0.0002 39 1 8.6110 0.6197 -0.0008 40 1 9.4899 2.9184 -0.0024 41 1 7.4988 5.8548 0.3475 42 1 10.5988 6.4549 1.6119 43 1 10.3778 8.1652 1.1714 44 1 8.9621 7.1507 1.5401 45 1 11.9782 9.8740 -0.5070 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412047123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:20 Heat of formation + Delta-G solvation = -73.860609 kcal Electronic energy + Delta-G solvation = -28025.358324 eV Core-core repulsion = 24008.439143 eV Total energy + Delta-G solvation = -4016.919181 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.35141 -39.79631 -38.70763 -37.58551 -36.35397 -34.25378 -33.86975 -32.05438 -30.79337 -30.00610 -28.77914 -28.12683 -26.33328 -25.22588 -23.73955 -23.56837 -22.32231 -21.43989 -20.10773 -19.14176 -18.01580 -17.06693 -16.97789 -16.76664 -16.24871 -16.06193 -15.96827 -15.43822 -15.41926 -14.79858 -14.59409 -14.47239 -14.33221 -13.88469 -13.47818 -13.13193 -12.92228 -12.82698 -12.75413 -12.55009 -12.44168 -12.09782 -11.95087 -11.73764 -11.60974 -11.18617 -11.06923 -10.83525 -10.72810 -10.57724 -10.31849 -10.28503 -10.05855 -10.03004 -9.75097 -9.06099 -8.69473 -8.41638 -7.99141 -7.54657 -6.10661 -4.14235 1.33576 1.52449 2.20342 2.38236 3.28736 3.36703 3.40171 3.43974 3.45819 3.64152 4.01643 4.04582 4.26378 4.41957 4.53230 4.54421 4.55112 4.77033 4.84067 4.89668 5.05375 5.17221 5.21118 5.23102 5.27409 5.49595 5.57516 5.59461 5.73341 5.78178 6.00522 6.20594 6.43012 6.48267 6.50683 6.58317 6.71557 6.77276 6.81684 6.86562 7.13839 7.33177 7.36940 7.65601 7.75176 7.86583 8.01239 8.26242 8.93740 8.97831 9.51832 10.96957 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031087 B = 0.002293 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.472019 B =12207.184900 C =12787.221516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.050 3.950 4 C 0.521 3.479 5 O -0.496 6.496 6 N -0.552 5.552 7 C 0.101 3.899 8 C -0.080 4.080 9 C -0.183 4.183 10 C 0.159 3.841 11 C -0.159 4.159 12 C -0.073 4.073 13 C -0.152 4.152 14 C 0.209 3.791 15 N -0.683 5.683 16 C 0.518 3.482 17 O -0.517 6.517 18 C 0.031 3.969 19 H 0.055 0.945 20 C -0.134 4.134 21 C -0.503 4.503 22 H 0.076 0.924 23 C 0.059 3.941 24 N -0.895 5.895 25 Si 0.901 3.099 26 H -0.271 1.271 27 H -0.284 1.284 28 H -0.284 1.284 29 H 0.045 0.955 30 H 0.093 0.907 31 H 0.045 0.955 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.134 0.866 39 H 0.129 0.871 40 H 0.153 0.847 41 H 0.407 0.593 42 H 0.033 0.967 43 H 0.096 0.904 44 H 0.013 0.987 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.721 -8.868 3.828 24.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.030 4.030 4 C 0.309 3.691 5 O -0.368 6.368 6 N -0.278 5.278 7 C -0.022 4.022 8 C -0.117 4.117 9 C -0.189 4.189 10 C 0.065 3.935 11 C -0.180 4.180 12 C -0.093 4.093 13 C -0.173 4.173 14 C 0.112 3.888 15 N -0.326 5.326 16 C 0.310 3.690 17 O -0.391 6.391 18 C 0.010 3.990 19 H 0.073 0.927 20 C -0.192 4.192 21 C -0.541 4.541 22 H 0.094 0.906 23 C -0.142 4.142 24 N -0.535 5.535 25 Si 0.728 3.272 26 H -0.195 1.195 27 H -0.210 1.210 28 H -0.210 1.210 29 H 0.064 0.936 30 H 0.111 0.889 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.152 0.848 39 H 0.147 0.853 40 H 0.170 0.830 41 H 0.242 0.758 42 H 0.052 0.948 43 H 0.114 0.886 44 H 0.032 0.968 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.897 -10.096 3.460 24.359 hybrid contribution 0.204 0.839 -0.205 0.888 sum -21.693 -9.257 3.254 23.809 Atomic orbital electron populations 1.22862 0.80002 1.03542 1.00249 1.88016 1.20068 1.24922 1.95447 1.22171 0.90638 0.87242 1.02925 1.20153 0.88727 0.83217 0.76974 1.90722 1.74264 1.25708 1.46139 1.45730 1.04707 1.06976 1.70425 1.22197 0.97570 0.79589 1.02796 1.20962 0.89992 0.96765 1.03966 1.19453 0.92529 0.93820 1.13059 1.17906 0.81825 0.94150 0.99634 1.20808 0.92128 0.98273 1.06820 1.20841 0.94141 0.96807 0.97481 1.21480 1.01542 0.90798 1.03467 1.17189 0.89514 0.85764 0.96357 1.44112 1.19197 1.06813 1.62503 1.22320 0.78573 0.93511 0.74634 1.90516 1.59476 1.47918 1.41189 1.18920 0.97725 0.86320 0.96022 0.92692 1.21765 0.97490 1.04773 0.95141 1.21155 0.99111 0.96841 1.36998 0.90580 1.24948 0.98544 0.95352 0.95367 1.69867 1.37837 1.00389 1.45381 0.86378 0.83648 0.78246 0.78885 1.19496 1.21029 1.21011 0.93642 0.88890 0.93661 0.89859 0.89855 0.89820 0.89807 0.89074 0.89230 0.84783 0.85346 0.82969 0.75825 0.94790 0.88575 0.96838 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.37 -3.72 10.24 -55.14 -0.56 -4.28 16 3 C 0.05 0.40 5.56 36.01 0.20 0.60 16 4 C 0.52 6.40 7.87 -10.98 -0.09 6.31 16 5 O -0.50 -8.17 14.66 -14.36 -0.21 -8.38 16 6 N -0.55 -6.40 3.13 -112.90 -0.35 -6.75 16 7 C 0.10 0.73 6.67 -3.63 -0.02 0.71 16 8 C -0.08 -0.73 6.67 -27.25 -0.18 -0.91 16 9 C -0.18 -2.53 6.17 -104.09 -0.64 -3.17 16 10 C 0.16 2.30 6.62 -83.59 -0.55 1.75 16 11 C -0.16 -2.47 9.45 -39.17 -0.37 -2.84 16 12 C -0.07 -1.13 10.01 -39.74 -0.40 -1.53 16 13 C -0.15 -2.67 8.72 -39.37 -0.34 -3.01 16 14 C 0.21 3.46 6.43 -83.72 -0.54 2.92 16 15 N -0.68 -11.56 5.19 -9.88 -0.05 -11.61 16 16 C 0.52 11.19 6.95 -10.98 -0.08 11.12 16 17 O -0.52 -12.69 12.62 5.55 0.07 -12.62 16 18 C 0.03 0.73 2.63 -92.92 -0.24 0.49 16 19 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 20 C -0.13 -2.91 8.87 37.16 0.33 -2.58 16 21 C -0.50 -13.70 8.38 -34.44 -0.29 -13.99 16 22 H 0.08 2.20 6.75 -52.48 -0.35 1.84 16 23 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 24 N -0.90 -24.30 11.32 55.43 0.63 -23.67 16 25 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 26 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.13 2.14 6.27 -52.49 -0.33 1.81 16 39 H 0.13 1.69 8.06 -52.48 -0.42 1.26 16 40 H 0.15 3.00 5.79 -52.49 -0.30 2.70 16 41 H 0.41 5.65 8.17 -40.82 -0.33 5.32 16 42 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.10 2.32 6.07 -51.93 -0.32 2.00 16 44 H 0.01 0.23 7.70 -51.93 -0.40 -0.17 16 45 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 372.02 15.07 5.61 5.61 Total: -1.00 -34.48 372.02 -8.34 -42.82 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.24 Total: 3.96 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -2.20 Total: -1.36 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: 0.22 Total: -42.03 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.70 Total: -25.29 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.48 -8.34 -42.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412047123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.038 kcal (2) G-P(sol) polarization free energy of solvation -34.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds