Wall clock time and date at job start Tue Mar 31 2020 18:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42890 * 114.00034 * 2 1 4 4 C 1.50706 * 109.47414 * 180.02562 * 3 2 1 5 5 O 1.21284 * 119.99614 * 0.02562 * 4 3 2 6 6 N 1.34775 * 120.00407 * 179.97438 * 4 3 2 7 7 C 1.46541 * 124.97655 * 359.97438 * 6 4 3 8 8 C 1.53745 * 105.17925 * 180.02562 * 7 6 4 9 9 C 1.51211 * 104.57270 * 359.97438 * 8 7 6 10 10 C 1.38476 * 108.58812 * 0.02562 * 9 8 7 11 11 C 1.39656 * 119.08608 * 179.97438 * 10 9 8 12 12 C 1.37921 * 120.42916 * 0.02562 * 11 10 9 13 13 C 1.38134 * 120.30652 * 359.95140 * 12 11 10 14 14 C 1.38759 * 130.98225 * 179.97438 * 9 8 7 15 15 N 1.39922 * 119.99829 * 0.03396 * 14 9 8 16 16 C 1.34779 * 119.99711 * 204.81871 * 15 14 9 17 17 O 1.21289 * 120.00222 * 5.53417 * 16 15 14 18 18 C 1.50707 * 119.99926 * 185.53130 * 16 15 14 19 19 H 1.09001 * 109.46721 * 300.00067 * 18 16 15 20 20 C 1.52998 * 109.47078 * 60.00048 * 18 16 15 21 21 C 1.50695 * 109.47003 * 180.02562 * 18 16 15 22 22 H 1.08005 * 120.00415 * 0.02562 * 21 18 16 23 23 C 1.37882 * 119.99992 * 180.02562 * 21 18 16 24 24 N 1.31509 * 119.99766 * 359.97438 * 23 21 18 25 25 Si 1.86795 * 120.00025 * 180.02562 * 23 21 18 26 26 H 1.48501 * 109.47416 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47431 * 119.99673 * 25 23 21 28 28 H 1.48509 * 109.46732 * 239.99720 * 25 23 21 29 29 H 1.08999 * 109.47649 * 59.99833 * 1 2 3 30 30 H 1.08997 * 109.47206 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46632 * 299.99467 * 1 2 3 32 32 H 1.09005 * 109.47406 * 60.00637 * 3 2 1 33 33 H 1.09000 * 109.47907 * 300.00515 * 3 2 1 34 34 H 1.09001 * 110.29851 * 298.94061 * 7 6 4 35 35 H 1.09002 * 110.30343 * 61.08971 * 7 6 4 36 36 H 1.08997 * 110.41572 * 118.77197 * 8 7 6 37 37 H 1.09005 * 110.40917 * 241.22389 * 8 7 6 38 38 H 1.07998 * 119.78485 * 179.97438 * 11 10 9 39 39 H 1.08007 * 119.84386 * 179.97438 * 12 11 10 40 40 H 1.07997 * 120.12411 * 179.97438 * 13 12 11 41 41 H 0.96999 * 120.00602 * 24.81730 * 15 14 9 42 42 H 1.09005 * 109.47030 * 59.99717 * 20 18 16 43 43 H 1.09000 * 109.47220 * 179.97438 * 20 18 16 44 44 H 1.08999 * 109.47469 * 300.00623 * 20 18 16 45 45 H 0.97004 * 120.00421 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 8 4.0341 0.0915 -0.0015 6 7 4.2765 2.2968 -0.0013 7 6 3.7635 3.6694 -0.0019 8 6 5.0125 4.5660 -0.0032 9 6 6.1749 3.5990 -0.0024 10 6 5.6749 2.3077 -0.0016 11 6 6.5679 1.2339 -0.0013 12 6 7.9289 1.4572 -0.0014 13 6 8.4237 2.7469 -0.0027 14 6 7.5444 3.8223 -0.0034 15 7 8.0398 5.1309 -0.0048 16 6 9.2689 5.3856 -0.4957 17 8 9.9052 4.5003 -1.0272 18 6 9.8527 6.7706 -0.3843 19 1 9.2089 7.4792 -0.9054 20 6 9.9551 7.1637 1.0908 21 6 11.2254 6.7885 -1.0059 22 1 11.6341 5.8874 -1.4388 23 6 11.9597 7.9555 -1.0220 24 7 11.4619 9.0529 -0.4954 25 14 13.6608 7.9779 -1.7932 26 1 13.9872 6.6252 -2.3118 27 1 13.6851 8.9559 -2.9103 28 1 14.6630 8.3703 -0.7699 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5137 0.8900 32 1 1.6887 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.1676 3.8500 -0.8966 35 1 3.1682 3.8512 0.8929 36 1 5.0342 5.1865 -0.8990 37 1 5.0349 5.1878 0.8919 38 1 6.1902 0.2221 -0.0002 39 1 8.6110 0.6197 -0.0008 40 1 9.4899 2.9184 -0.0024 41 1 7.4988 5.8548 0.3475 42 1 10.5988 6.4549 1.6119 43 1 10.3778 8.1652 1.1714 44 1 8.9621 7.1507 1.5401 45 1 11.9782 9.8740 -0.5070 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412047123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:19 Heat of formation + Delta-G solvation = -96.381629 kcal Electronic energy + Delta-G solvation = -28026.334908 eV Core-core repulsion = 24008.439143 eV Total energy + Delta-G solvation = -4017.895766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.36325 -41.15202 -39.78000 -38.36904 -37.45845 -35.81876 -35.68360 -33.11310 -32.51726 -31.02193 -29.62029 -29.20726 -27.21151 -26.85798 -25.16447 -24.43747 -23.65753 -22.56715 -21.42456 -20.45042 -19.08546 -18.26902 -18.03136 -17.74446 -17.62361 -17.26594 -16.77910 -16.60339 -16.54780 -16.27264 -16.03368 -15.69934 -15.17142 -15.05382 -14.86567 -14.55012 -14.32553 -13.86129 -13.69960 -13.49287 -13.37284 -13.25757 -12.98323 -12.86938 -12.81042 -12.70638 -12.57517 -12.35845 -12.30930 -12.20887 -12.02441 -11.67599 -11.05905 -11.03707 -10.99176 -10.77986 -10.57304 -10.27663 -9.10694 -8.78647 -8.16206 -6.25740 0.18880 0.25937 1.39404 1.41438 1.42628 1.44175 1.55038 1.85108 2.19718 2.47078 2.80530 2.83564 3.14123 3.33301 3.53668 3.69898 3.99920 4.10799 4.12414 4.19558 4.19738 4.30266 4.40319 4.49748 4.51564 4.58336 4.59499 4.65032 4.74449 4.89612 4.93105 4.98223 5.00815 5.02604 5.12273 5.24207 5.30263 5.49028 5.49973 5.56501 5.74419 5.92038 6.00379 6.07533 6.19649 6.27276 6.62654 6.83017 6.87060 7.32468 7.44682 8.89650 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031087 B = 0.002293 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.472019 B =12207.184900 C =12787.221516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.056 3.944 4 C 0.511 3.489 5 O -0.552 6.552 6 N -0.551 5.551 7 C 0.096 3.904 8 C -0.082 4.082 9 C -0.170 4.170 10 C 0.151 3.849 11 C -0.169 4.169 12 C -0.076 4.076 13 C -0.176 4.176 14 C 0.188 3.812 15 N -0.661 5.661 16 C 0.522 3.478 17 O -0.556 6.556 18 C 0.029 3.971 19 H 0.051 0.949 20 C -0.121 4.121 21 C -0.528 4.528 22 H 0.049 0.951 23 C 0.022 3.978 24 N -0.908 5.908 25 Si 0.953 3.047 26 H -0.281 1.281 27 H -0.275 1.275 28 H -0.275 1.275 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.126 0.874 39 H 0.141 0.859 40 H 0.124 0.876 41 H 0.423 0.577 42 H 0.021 0.979 43 H 0.074 0.926 44 H 0.055 0.945 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.239 -7.367 4.347 27.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C -0.023 4.023 4 C 0.303 3.697 5 O -0.428 6.428 6 N -0.276 5.276 7 C -0.024 4.024 8 C -0.119 4.119 9 C -0.176 4.176 10 C 0.055 3.945 11 C -0.190 4.190 12 C -0.095 4.095 13 C -0.197 4.197 14 C 0.091 3.909 15 N -0.306 5.306 16 C 0.313 3.687 17 O -0.433 6.433 18 C 0.008 3.992 19 H 0.069 0.931 20 C -0.179 4.179 21 C -0.567 4.567 22 H 0.067 0.933 23 C -0.178 4.178 24 N -0.547 5.547 25 Si 0.779 3.221 26 H -0.206 1.206 27 H -0.200 1.200 28 H -0.201 1.201 29 H 0.080 0.920 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.121 0.879 37 H 0.133 0.867 38 H 0.143 0.857 39 H 0.159 0.841 40 H 0.141 0.859 41 H 0.262 0.738 42 H 0.041 0.959 43 H 0.092 0.908 44 H 0.074 0.926 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -25.494 -8.547 4.005 27.185 hybrid contribution 1.187 0.306 -0.359 1.278 sum -24.306 -8.241 3.647 25.923 Atomic orbital electron populations 1.23054 0.77800 1.04247 1.01946 1.87961 1.22514 1.26582 1.95860 1.22333 0.86823 0.87070 1.06051 1.21177 0.90734 0.82426 0.75408 1.90697 1.75547 1.27907 1.48663 1.45993 1.03260 1.08878 1.69482 1.22653 0.97104 0.76266 1.06362 1.21224 0.88327 0.96517 1.05816 1.19773 0.92394 0.95197 1.10233 1.18157 0.83783 0.93952 0.98594 1.20864 0.92381 0.98588 1.07182 1.20918 0.94671 0.96540 0.97374 1.21333 1.00498 0.92266 1.05607 1.17272 0.90771 0.84825 0.97997 1.43624 1.17707 1.07752 1.61481 1.21882 0.79768 0.92336 0.74751 1.90514 1.60974 1.48631 1.43193 1.18829 0.96094 0.87507 0.96786 0.93128 1.21587 0.99536 1.02810 0.94015 1.21288 1.01291 0.96132 1.37965 0.93289 1.25534 1.01356 0.95118 0.95750 1.69929 1.38740 1.00565 1.45459 0.85581 0.80342 0.77664 0.78518 1.20638 1.20021 1.20063 0.91951 0.88911 0.91822 0.86289 0.86561 0.86634 0.86002 0.87859 0.86669 0.85659 0.84089 0.85859 0.73843 0.95941 0.90753 0.92615 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.41 -7.42 10.24 -129.94 -1.33 -8.75 16 3 C 0.06 0.67 5.56 71.24 0.40 1.07 16 4 C 0.51 11.51 7.87 87.66 0.69 12.20 16 5 O -0.55 -18.29 14.66 15.99 0.23 -18.05 16 6 N -0.55 -11.13 3.13 -629.50 -1.97 -13.10 16 7 C 0.10 0.88 6.67 86.62 0.58 1.45 16 8 C -0.08 -1.13 6.67 30.26 0.20 -0.92 16 9 C -0.17 -4.38 6.17 -19.52 -0.12 -4.50 16 10 C 0.15 4.19 6.62 38.26 0.25 4.44 16 11 C -0.17 -5.37 9.45 22.54 0.21 -5.15 16 12 C -0.08 -2.47 10.01 22.17 0.22 -2.25 16 13 C -0.18 -6.48 8.72 22.41 0.20 -6.28 16 14 C 0.19 6.18 6.43 38.14 0.25 6.42 16 15 N -0.66 -21.95 5.19 -303.55 -1.58 -23.53 16 16 C 0.52 23.01 6.95 87.66 0.61 23.62 16 17 O -0.56 -28.69 12.62 -3.06 -0.04 -28.73 16 18 C 0.03 1.38 2.63 -12.29 -0.03 1.35 16 19 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 20 C -0.12 -5.23 8.87 71.98 0.64 -4.59 16 21 C -0.53 -29.65 8.38 25.60 0.21 -29.43 16 22 H 0.05 2.97 6.75 -2.91 -0.02 2.95 16 23 C 0.02 1.19 5.30 84.66 0.45 1.64 16 24 N -0.91 -49.19 11.32 21.45 0.24 -48.95 16 25 Si 0.95 44.20 29.54 68.60 2.03 46.22 16 26 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 27 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 28 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 29 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.12 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 36 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.13 4.21 6.27 -2.91 -0.02 4.19 16 39 H 0.14 3.99 8.06 -2.91 -0.02 3.96 16 40 H 0.12 5.27 5.79 -2.91 -0.02 5.25 16 41 H 0.42 10.81 8.17 -92.71 -0.76 10.05 16 42 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.07 3.56 6.07 -2.39 -0.01 3.54 16 44 H 0.05 1.87 7.70 -2.39 -0.02 1.85 16 45 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 Total: -1.00 -80.82 372.02 3.86 -76.96 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.27 Total: 17.42 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 6.00 Total: 0.51 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -3.30 Total: -85.58 kcal Atomic # 8 Polarization: -54.40 SS G_CDS: -1.13 Total: -55.53 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -80.82 3.86 -76.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412047123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.422 kcal (2) G-P(sol) polarization free energy of solvation -80.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds