Wall clock time and date at job start Tue Mar 31 2020 17:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46901 * 2 1 4 4 N 1.46493 * 109.46887 * 119.99683 * 2 1 3 5 5 C 1.36936 * 120.00314 * 274.99849 * 4 2 1 6 6 H 1.08001 * 120.00159 * 0.02562 * 5 4 2 7 7 C 1.38811 * 119.99842 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99540 * 179.72505 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72270 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72118 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72153 * 9 7 5 13 13 C 1.50697 * 109.46954 * 239.99873 * 2 1 3 14 14 C 1.38230 * 120.00038 * 279.72574 * 13 2 1 15 15 C 1.38239 * 120.00238 * 179.81459 * 14 13 2 16 16 C 1.38236 * 119.99647 * 0.41602 * 15 14 13 17 17 C 1.50704 * 120.00052 * 179.79481 * 16 15 14 18 18 N 1.46498 * 109.46485 * 270.02094 * 17 16 15 19 19 C 1.34783 * 119.99646 * 179.97438 * 18 17 16 20 20 O 1.21741 * 119.99865 * 0.02562 * 19 18 17 21 21 C 1.46380 * 120.00133 * 179.97438 * 19 18 17 22 22 C 1.33976 * 119.22921 * 0.02562 * 21 19 18 23 23 O 1.35001 * 121.68285 * 180.38963 * 22 21 19 24 24 C 1.43243 * 116.76984 * 342.79163 * 23 22 21 25 25 C 1.53558 * 108.08698 * 45.48849 * 24 23 22 26 26 O 1.36213 * 119.22939 * 179.73231 * 21 19 18 27 27 C 1.38234 * 120.00088 * 359.81311 * 16 15 14 28 28 C 1.38229 * 120.00103 * 0.02562 * 27 16 15 29 29 H 1.08995 * 109.47185 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47326 * 300.00178 * 1 2 3 31 31 H 1.09003 * 109.47067 * 60.00275 * 1 2 3 32 32 H 0.97000 * 120.00040 * 94.99981 * 4 2 1 33 33 H 0.96999 * 119.99889 * 180.27497 * 8 7 5 34 34 H 1.07998 * 120.00233 * 0.02562 * 14 13 2 35 35 H 1.07993 * 120.00613 * 180.21110 * 15 14 13 36 36 H 1.08996 * 109.46759 * 30.02143 * 17 16 15 37 37 H 1.09001 * 109.47196 * 150.02402 * 17 16 15 38 38 H 0.96998 * 120.01022 * 0.02562 * 18 17 16 39 39 H 1.07998 * 119.15869 * 0.36044 * 22 21 19 40 40 H 1.08995 * 109.74577 * 165.13491 * 24 23 22 41 41 H 1.09001 * 109.73891 * 285.84568 * 24 23 22 42 42 H 1.09003 * 109.75058 * 61.47415 * 25 24 23 43 43 H 1.09000 * 109.75597 * 182.21995 * 25 24 23 44 44 H 1.08004 * 120.00354 * 179.97438 * 27 16 15 45 45 H 1.08004 * 120.00662 * 179.97438 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3757 6 1 1.8919 1.0404 2.4243 7 6 2.6123 -0.6617 3.5090 8 7 2.7431 -0.0037 4.6414 9 14 3.0578 -2.4738 3.4249 10 1 1.8628 -3.2929 3.7507 11 1 3.5267 -2.8052 2.0554 12 1 4.1381 -2.7639 4.4016 13 6 2.0323 -0.7104 -1.2304 14 6 2.0720 -2.0918 -1.2632 15 6 2.5292 -2.7436 -2.3933 16 6 2.9547 -2.0138 -3.4875 17 6 3.4574 -2.7242 -4.7178 18 7 4.9028 -2.9344 -4.6038 19 6 5.5735 -3.5560 -5.5939 20 8 4.9782 -3.9423 -6.5832 21 6 7.0177 -3.7657 -5.4804 22 6 7.6573 -3.3339 -4.3852 23 8 8.9891 -3.4942 -4.2324 24 6 9.6245 -4.4575 -5.0810 25 6 9.1052 -4.2493 -6.5110 26 8 7.6789 -4.4005 -6.4879 27 6 2.9195 -0.6323 -3.4530 28 6 2.4592 0.0194 -2.3242 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6317 1.1527 33 1 3.0706 -0.4598 5.4323 34 1 1.7427 -2.6619 -0.4071 35 1 2.5570 -3.8228 -2.4202 36 1 2.9563 -3.6876 -4.8112 37 1 3.2468 -2.1181 -5.5989 38 1 5.3770 -2.6271 -3.8155 39 1 7.0933 -2.8447 -3.6049 40 1 10.7047 -4.3135 -5.0571 41 1 9.3791 -5.4644 -4.7432 42 1 9.3678 -3.2493 -6.8563 43 1 9.5426 -4.9956 -7.1741 44 1 3.2523 -0.0621 -4.3077 45 1 2.4320 1.0987 -2.2970 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484556981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:46 Heat of formation + Delta-G solvation = -45.420886 kcal Electronic energy + Delta-G solvation = -27413.763606 eV Core-core repulsion = 23398.077664 eV Total energy + Delta-G solvation = -4015.685942 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.49438 -39.94784 -39.18114 -37.39622 -36.14608 -34.77890 -32.91097 -32.15910 -30.93129 -30.63360 -29.39341 -28.62981 -26.19925 -25.56423 -23.74568 -22.82188 -22.26027 -21.59227 -19.98766 -19.81932 -18.93304 -18.70951 -18.00092 -16.89172 -16.18757 -16.13482 -15.72625 -15.44587 -15.28283 -15.01728 -14.83603 -14.60745 -14.54600 -14.25685 -13.89188 -13.63081 -13.37323 -13.27546 -12.87346 -12.83224 -12.49262 -12.38333 -12.28493 -11.83314 -11.49308 -11.43428 -11.12910 -11.12035 -10.94741 -10.73584 -10.40090 -10.25299 -10.09204 -9.63928 -9.44264 -9.05386 -8.82639 -8.62422 -8.50595 -7.35149 -5.82469 -3.18456 0.91472 1.26031 1.50325 2.32190 2.68816 2.94509 3.32240 3.34429 3.39135 3.41008 3.81701 3.91216 4.30796 4.36667 4.44983 4.53492 4.54768 4.70075 4.82828 4.83668 5.01165 5.04755 5.10404 5.21217 5.35238 5.40117 5.48670 5.50526 5.58757 5.76662 5.87781 6.01564 6.08021 6.15022 6.17932 6.30405 6.31973 6.47222 6.55824 6.58308 6.81944 6.82831 6.97493 7.09085 7.18741 7.87360 7.92863 8.36231 9.13756 9.86092 10.05299 11.35678 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012837 B = 0.002600 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.709117 B =10766.799002 C =12264.343987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.209 3.791 3 H 0.065 0.935 4 N -0.745 5.745 5 C -0.244 4.244 6 H 0.092 0.908 7 C 0.006 3.994 8 N -0.932 5.932 9 Si 0.881 3.119 10 H -0.283 1.283 11 H -0.277 1.277 12 H -0.290 1.290 13 C -0.054 4.054 14 C -0.113 4.113 15 C -0.098 4.098 16 C -0.132 4.132 17 C 0.170 3.830 18 N -0.718 5.718 19 C 0.575 3.425 20 O -0.525 6.525 21 C -0.073 4.073 22 C 0.011 3.989 23 O -0.298 6.298 24 C 0.013 3.987 25 C 0.018 3.982 26 O -0.286 6.286 27 C -0.098 4.098 28 C -0.118 4.118 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.042 0.958 32 H 0.362 0.638 33 H 0.260 0.740 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.401 0.599 39 H 0.180 0.820 40 H 0.123 0.877 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.010 -7.022 -22.403 25.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.100 3.900 3 H 0.083 0.917 4 N -0.389 5.389 5 C -0.374 4.374 6 H 0.110 0.890 7 C -0.190 4.190 8 N -0.580 5.580 9 Si 0.711 3.289 10 H -0.210 1.210 11 H -0.203 1.203 12 H -0.216 1.216 13 C -0.055 4.055 14 C -0.132 4.132 15 C -0.116 4.116 16 C -0.132 4.132 17 C 0.048 3.952 18 N -0.373 5.373 19 C 0.362 3.638 20 O -0.401 6.401 21 C -0.122 4.122 22 C -0.056 4.056 23 O -0.210 6.210 24 C -0.063 4.063 25 C -0.058 4.058 26 O -0.200 6.200 27 C -0.117 4.117 28 C -0.136 4.136 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.196 0.804 33 H 0.070 0.930 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.237 0.763 39 H 0.196 0.804 40 H 0.141 0.859 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.641 -7.149 -22.952 25.901 hybrid contribution 0.757 -1.218 0.563 1.541 sum 10.398 -8.367 -22.390 26.066 Atomic orbital electron populations 1.22390 0.97634 1.01228 1.00755 1.19229 0.92371 0.95277 0.83148 0.91680 1.42869 1.79787 1.09495 1.06774 1.19062 1.37219 0.95730 0.85373 0.89046 1.24655 1.01286 0.97465 0.95562 1.69695 1.52298 1.35539 1.00425 0.86609 0.78264 0.86930 0.77125 1.20996 1.20278 1.21624 1.20563 0.95138 0.93959 0.95857 1.21030 0.99875 0.94466 0.97814 1.21023 0.98297 0.99562 0.92754 1.19648 1.04119 0.93910 0.95557 1.20182 0.78819 1.00390 0.95810 1.45980 1.09426 1.60295 1.21588 1.17111 0.84913 0.78433 0.83324 1.90859 1.69236 1.49803 1.30242 1.20353 0.93350 1.08079 0.90386 1.23214 0.84333 1.01601 0.96405 1.86133 1.18606 1.57518 1.58750 1.23763 0.99338 0.92821 0.90331 1.23713 0.80056 1.04316 0.97703 1.86470 1.19209 1.68175 1.46138 1.20982 0.99160 0.93442 0.98100 1.21051 0.99586 1.00044 0.92965 0.93403 0.91859 0.93935 0.80443 0.92989 0.85928 0.86195 0.90402 0.90379 0.76253 0.80357 0.85917 0.89908 0.90297 0.85943 0.86156 0.85745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.47 37.16 0.35 -2.33 16 2 C 0.21 3.83 3.09 -69.08 -0.21 3.62 16 3 H 0.07 1.22 7.94 -51.93 -0.41 0.81 16 4 N -0.75 -16.91 4.87 -54.55 -0.27 -17.18 16 5 C -0.24 -6.66 10.41 -15.06 -0.16 -6.82 16 6 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 7 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 8 N -0.93 -28.72 13.97 55.49 0.78 -27.95 16 9 Si 0.88 21.56 27.74 -169.99 -4.72 16.84 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.33 6.51 56.52 0.37 -5.97 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 C -0.05 -0.84 4.96 -104.63 -0.52 -1.36 16 14 C -0.11 -1.68 9.06 -39.58 -0.36 -2.04 16 15 C -0.10 -1.20 9.70 -39.58 -0.38 -1.59 16 16 C -0.13 -1.45 5.25 -104.62 -0.55 -2.00 16 17 C 0.17 1.72 5.80 -5.19 -0.03 1.69 16 18 N -0.72 -7.03 5.48 -62.89 -0.34 -7.38 16 19 C 0.58 7.06 7.73 -12.98 -0.10 6.96 16 20 O -0.52 -8.45 16.92 -10.06 -0.17 -8.62 16 21 C -0.07 -0.79 6.61 -37.81 -0.25 -1.04 16 22 C 0.01 0.10 10.57 29.23 0.31 0.41 16 23 O -0.30 -2.56 10.47 -30.83 -0.32 -2.88 16 24 C 0.01 0.07 7.29 37.45 0.27 0.35 16 25 C 0.02 0.11 7.32 37.45 0.27 0.39 16 26 O -0.29 -3.21 10.29 -45.75 -0.47 -3.68 16 27 C -0.10 -1.10 9.70 -39.59 -0.38 -1.48 16 28 C -0.12 -1.54 9.67 -39.58 -0.38 -1.92 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.36 8.05 3.91 -40.82 -0.16 7.89 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.12 1.91 6.90 -52.49 -0.36 1.55 16 35 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 37 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 38 H 0.40 3.21 6.30 -40.82 -0.26 2.95 16 39 H 0.18 1.16 6.08 -52.49 -0.32 0.84 16 40 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 45 H 0.12 1.44 8.04 -52.48 -0.42 1.02 16 LS Contribution 377.41 15.07 5.69 5.69 Total: -1.00 -35.17 377.41 -8.21 -43.39 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.17 Total: 8.87 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -2.22 Total: -7.09 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.16 Total: -52.50 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.96 Total: -15.19 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.72 Total: 16.84 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.17 -8.21 -43.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484556981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.036 kcal (2) G-P(sol) polarization free energy of solvation -35.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds