Wall clock time and date at job start Tue Mar 31 2020 17:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46901 * 2 1 4 4 N 1.46493 * 109.46887 * 119.99683 * 2 1 3 5 5 C 1.36936 * 120.00314 * 274.99849 * 4 2 1 6 6 H 1.08001 * 120.00159 * 0.02562 * 5 4 2 7 7 C 1.38811 * 119.99842 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99540 * 179.72505 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72270 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72118 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72153 * 9 7 5 13 13 C 1.50697 * 109.46954 * 239.99873 * 2 1 3 14 14 C 1.38230 * 120.00038 * 279.72574 * 13 2 1 15 15 C 1.38239 * 120.00238 * 179.81459 * 14 13 2 16 16 C 1.38236 * 119.99647 * 0.41602 * 15 14 13 17 17 C 1.50704 * 120.00052 * 179.79481 * 16 15 14 18 18 N 1.46498 * 109.46485 * 270.02094 * 17 16 15 19 19 C 1.34783 * 119.99646 * 179.97438 * 18 17 16 20 20 O 1.21741 * 119.99865 * 0.02562 * 19 18 17 21 21 C 1.46380 * 120.00133 * 179.97438 * 19 18 17 22 22 C 1.33976 * 119.22921 * 0.02562 * 21 19 18 23 23 O 1.35001 * 121.68285 * 180.38963 * 22 21 19 24 24 C 1.43243 * 116.76984 * 342.79163 * 23 22 21 25 25 C 1.53558 * 108.08698 * 45.48849 * 24 23 22 26 26 O 1.36213 * 119.22939 * 179.73231 * 21 19 18 27 27 C 1.38234 * 120.00088 * 359.81311 * 16 15 14 28 28 C 1.38229 * 120.00103 * 0.02562 * 27 16 15 29 29 H 1.08995 * 109.47185 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47326 * 300.00178 * 1 2 3 31 31 H 1.09003 * 109.47067 * 60.00275 * 1 2 3 32 32 H 0.97000 * 120.00040 * 94.99981 * 4 2 1 33 33 H 0.96999 * 119.99889 * 180.27497 * 8 7 5 34 34 H 1.07998 * 120.00233 * 0.02562 * 14 13 2 35 35 H 1.07993 * 120.00613 * 180.21110 * 15 14 13 36 36 H 1.08996 * 109.46759 * 30.02143 * 17 16 15 37 37 H 1.09001 * 109.47196 * 150.02402 * 17 16 15 38 38 H 0.96998 * 120.01022 * 0.02562 * 18 17 16 39 39 H 1.07998 * 119.15869 * 0.36044 * 22 21 19 40 40 H 1.08995 * 109.74577 * 165.13491 * 24 23 22 41 41 H 1.09001 * 109.73891 * 285.84568 * 24 23 22 42 42 H 1.09003 * 109.75058 * 61.47415 * 25 24 23 43 43 H 1.09000 * 109.75597 * 182.21995 * 25 24 23 44 44 H 1.08004 * 120.00354 * 179.97438 * 27 16 15 45 45 H 1.08004 * 120.00662 * 179.97438 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3757 6 1 1.8919 1.0404 2.4243 7 6 2.6123 -0.6617 3.5090 8 7 2.7431 -0.0037 4.6414 9 14 3.0578 -2.4738 3.4249 10 1 1.8628 -3.2929 3.7507 11 1 3.5267 -2.8052 2.0554 12 1 4.1381 -2.7639 4.4016 13 6 2.0323 -0.7104 -1.2304 14 6 2.0720 -2.0918 -1.2632 15 6 2.5292 -2.7436 -2.3933 16 6 2.9547 -2.0138 -3.4875 17 6 3.4574 -2.7242 -4.7178 18 7 4.9028 -2.9344 -4.6038 19 6 5.5735 -3.5560 -5.5939 20 8 4.9782 -3.9423 -6.5832 21 6 7.0177 -3.7657 -5.4804 22 6 7.6573 -3.3339 -4.3852 23 8 8.9891 -3.4942 -4.2324 24 6 9.6245 -4.4575 -5.0810 25 6 9.1052 -4.2493 -6.5110 26 8 7.6789 -4.4005 -6.4879 27 6 2.9195 -0.6323 -3.4530 28 6 2.4592 0.0194 -2.3242 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6317 1.1527 33 1 3.0706 -0.4598 5.4323 34 1 1.7427 -2.6619 -0.4071 35 1 2.5570 -3.8228 -2.4202 36 1 2.9563 -3.6876 -4.8112 37 1 3.2468 -2.1181 -5.5989 38 1 5.3770 -2.6271 -3.8155 39 1 7.0933 -2.8447 -3.6049 40 1 10.7047 -4.3135 -5.0571 41 1 9.3791 -5.4644 -4.7432 42 1 9.3678 -3.2493 -6.8563 43 1 9.5426 -4.9956 -7.1741 44 1 3.2523 -0.0621 -4.3077 45 1 2.4320 1.0987 -2.2970 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484556981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:45 Heat of formation + Delta-G solvation = -69.323752 kcal Electronic energy + Delta-G solvation = -27414.800112 eV Core-core repulsion = 23398.077664 eV Total energy + Delta-G solvation = -4016.722448 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.15320 -40.88133 -40.16991 -38.07899 -37.52045 -35.91295 -34.30277 -33.32662 -32.06480 -31.75325 -30.58828 -29.65063 -27.11655 -26.27777 -25.51947 -23.88687 -23.16936 -22.67864 -21.21627 -20.59276 -19.92834 -19.65095 -19.35170 -17.54043 -17.27338 -17.03448 -16.82081 -16.55099 -16.24573 -15.97044 -15.80098 -15.61968 -15.39782 -15.24460 -15.09702 -14.78043 -14.56908 -14.33276 -14.23830 -13.91718 -13.83228 -13.59108 -13.16102 -13.10676 -12.92344 -12.72152 -12.52432 -12.09670 -12.02163 -11.91955 -11.74713 -11.71179 -11.55200 -11.12979 -11.04175 -10.31517 -9.81078 -9.60999 -9.31947 -9.30321 -8.01640 -5.34870 0.17717 0.26003 0.51518 1.36475 1.39819 1.47044 1.60965 2.03673 2.20157 2.48357 2.65148 2.95525 3.30606 3.36402 3.59741 3.63385 3.69742 3.91638 3.92041 3.95404 3.96447 4.14514 4.23360 4.32462 4.41195 4.52552 4.58550 4.60733 4.66796 4.72013 4.78190 4.81604 4.96533 5.05549 5.09348 5.19868 5.21334 5.40091 5.52918 5.61545 5.72822 5.73883 5.82359 6.06773 6.14785 6.23006 6.45307 7.03590 7.08164 7.83631 8.02991 9.19864 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012837 B = 0.002600 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.709117 B =10766.799002 C =12264.343987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.203 3.797 3 H 0.055 0.945 4 N -0.748 5.748 5 C -0.226 4.226 6 H 0.059 0.941 7 C -0.064 4.064 8 N -0.984 5.984 9 Si 0.948 3.052 10 H -0.279 1.279 11 H -0.250 1.250 12 H -0.296 1.296 13 C -0.073 4.073 14 C -0.129 4.129 15 C -0.095 4.095 16 C -0.116 4.116 17 C 0.173 3.827 18 N -0.705 5.705 19 C 0.576 3.424 20 O -0.573 6.573 21 C -0.101 4.101 22 C 0.036 3.964 23 O -0.309 6.309 24 C 0.009 3.991 25 C 0.012 3.988 26 O -0.319 6.319 27 C -0.089 4.089 28 C -0.119 4.119 29 H 0.049 0.951 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.365 0.635 33 H 0.257 0.743 34 H 0.111 0.889 35 H 0.137 0.863 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.412 0.588 39 H 0.200 0.800 40 H 0.155 0.845 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.147 0.853 44 H 0.148 0.852 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.384 -8.241 -24.592 28.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.096 3.904 3 H 0.073 0.927 4 N -0.393 5.393 5 C -0.357 4.357 6 H 0.077 0.923 7 C -0.255 4.255 8 N -0.635 5.635 9 Si 0.776 3.224 10 H -0.205 1.205 11 H -0.175 1.175 12 H -0.223 1.223 13 C -0.074 4.074 14 C -0.148 4.148 15 C -0.113 4.113 16 C -0.116 4.116 17 C 0.051 3.949 18 N -0.359 5.359 19 C 0.364 3.636 20 O -0.454 6.454 21 C -0.149 4.149 22 C -0.031 4.031 23 O -0.221 6.221 24 C -0.065 4.065 25 C -0.063 4.063 26 O -0.234 6.234 27 C -0.107 4.107 28 C -0.138 4.138 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.200 0.800 33 H 0.066 0.934 34 H 0.129 0.871 35 H 0.155 0.845 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.250 0.750 39 H 0.216 0.784 40 H 0.172 0.828 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.165 0.835 44 H 0.165 0.835 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 11.014 -8.356 -25.178 28.724 hybrid contribution 0.376 -0.750 1.139 1.415 sum 11.390 -9.106 -24.038 28.116 Atomic orbital electron populations 1.22250 0.96436 1.01418 1.00990 1.19367 0.93137 0.94836 0.83064 0.92658 1.42872 1.79978 1.09692 1.06743 1.19028 1.35001 0.94576 0.87115 0.92276 1.25453 1.02460 1.02387 0.95217 1.69878 1.54628 1.37645 1.01322 0.85507 0.77755 0.81032 0.78148 1.20548 1.17481 1.22297 1.20276 0.97430 0.94335 0.95404 1.21003 1.01100 0.94181 0.98500 1.21169 0.97511 1.00532 0.92087 1.19713 1.02792 0.93920 0.95220 1.20154 0.78919 1.00442 0.95415 1.45841 1.09288 1.59396 1.21402 1.17383 0.85592 0.77750 0.82854 1.90827 1.70267 1.52121 1.32153 1.20217 0.92818 1.10349 0.91533 1.23512 0.84507 0.99370 0.95722 1.86123 1.18416 1.58131 1.59412 1.24059 1.00807 0.92348 0.89298 1.24021 0.77982 1.05483 0.98779 1.86405 1.21532 1.68732 1.46780 1.21241 0.97767 0.93600 0.98116 1.21192 0.99147 1.00714 0.92733 0.93194 0.94251 0.91010 0.80007 0.93404 0.87143 0.84481 0.90400 0.89823 0.75027 0.78405 0.82776 0.89579 0.89932 0.83503 0.83472 0.84576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.99 9.47 71.98 0.68 -4.31 16 2 C 0.20 7.37 3.09 44.25 0.14 7.50 16 3 H 0.06 2.09 7.94 -2.39 -0.02 2.07 16 4 N -0.75 -33.81 4.87 -326.51 -1.59 -35.41 16 5 C -0.23 -12.61 10.41 84.03 0.87 -11.74 16 6 H 0.06 3.61 8.06 -2.91 -0.02 3.58 16 7 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 8 N -0.98 -62.56 13.97 21.65 0.30 -62.26 16 9 Si 0.95 44.70 27.74 68.60 1.90 46.60 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.25 -10.56 6.51 99.48 0.65 -9.91 16 12 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 13 C -0.07 -2.15 4.96 -19.87 -0.10 -2.25 16 14 C -0.13 -3.57 9.06 22.27 0.20 -3.37 16 15 C -0.09 -2.05 9.70 22.27 0.22 -1.83 16 16 C -0.12 -2.17 5.25 -19.86 -0.10 -2.27 16 17 C 0.17 3.01 5.80 85.63 0.50 3.50 16 18 N -0.70 -12.04 5.48 -471.08 -2.58 -14.62 16 19 C 0.58 13.40 7.73 86.36 0.67 14.07 16 20 O -0.57 -18.30 16.92 10.07 0.17 -18.13 16 21 C -0.10 -2.04 6.61 23.42 0.15 -1.88 16 22 C 0.04 0.54 10.57 66.85 0.71 1.25 16 23 O -0.31 -4.48 10.47 -69.24 -0.72 -5.20 16 24 C 0.01 0.08 7.29 72.17 0.53 0.61 16 25 C 0.01 0.13 7.32 72.17 0.53 0.66 16 26 O -0.32 -6.89 10.29 -71.75 -0.74 -7.63 16 27 C -0.09 -1.66 9.70 22.27 0.22 -1.45 16 28 C -0.12 -2.79 9.67 22.27 0.22 -2.58 16 29 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.37 15.86 3.91 -92.71 -0.36 15.50 16 33 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 34 H 0.11 3.28 6.90 -2.91 -0.02 3.26 16 35 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 36 H 0.08 1.42 8.09 -2.39 -0.02 1.40 16 37 H 0.08 1.43 8.09 -2.39 -0.02 1.41 16 38 H 0.41 5.26 6.30 -92.71 -0.58 4.68 16 39 H 0.20 1.94 6.08 -2.91 -0.02 1.93 16 40 H 0.15 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.15 0.73 8.14 -2.39 -0.02 0.72 16 44 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 45 H 0.14 2.81 8.04 -2.91 -0.02 2.78 16 Total: -1.00 -78.92 377.41 2.65 -76.28 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.02 Total: 27.71 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 5.89 Total: -7.34 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -3.87 Total: -112.28 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -1.29 Total: -30.96 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.90 Total: 46.60 kcal Total: -78.92 2.65 -76.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484556981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.952 kcal (2) G-P(sol) polarization free energy of solvation -78.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds