Wall clock time and date at job start Tue Mar 31 2020 18:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35954 * 116.99932 * 2 1 4 4 C 1.38336 * 120.06033 * 359.97438 * 3 2 1 5 5 C 1.38611 * 120.58707 * 180.02562 * 4 3 2 6 6 C 1.37868 * 120.24968 * 0.02972 * 5 4 3 7 7 C 1.39185 * 119.73302 * 359.97438 * 6 5 4 8 8 C 1.47661 * 134.22785 * 179.97438 * 7 6 5 9 9 C 1.47076 * 127.13316 * 359.97438 * 8 7 6 10 10 O 1.21653 * 120.00135 * 0.02562 * 9 8 7 11 11 N 1.34779 * 119.99996 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99980 * 180.02562 * 11 9 8 13 13 H 1.08995 * 109.47463 * 35.00842 * 12 11 9 14 14 C 1.52995 * 109.47176 * 275.00334 * 12 11 9 15 15 C 1.53006 * 109.46726 * 155.00406 * 12 11 9 16 16 H 1.08993 * 109.46955 * 295.00332 * 15 12 11 17 17 C 1.52997 * 109.47127 * 55.00320 * 15 12 11 18 18 N 1.46500 * 109.46998 * 175.00106 * 15 12 11 19 19 C 1.36933 * 120.00119 * 155.00213 * 18 15 12 20 20 H 1.08000 * 120.00220 * 359.97438 * 19 18 15 21 21 C 1.38815 * 120.00205 * 180.02562 * 19 18 15 22 22 N 1.31612 * 120.00284 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99901 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46989 * 90.00075 * 23 21 19 25 25 H 1.48500 * 109.47435 * 210.00245 * 23 21 19 26 26 H 1.48503 * 109.47048 * 330.00352 * 23 21 19 27 27 C 1.36069 * 105.72723 * 180.24703 * 8 7 6 28 28 O 1.33774 * 109.83217 * 359.62763 * 27 8 7 29 29 C 1.34957 * 111.33036 * 0.39697 * 28 27 8 30 30 H 1.09005 * 109.46799 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47515 * 300.00613 * 1 2 3 32 32 H 1.08997 * 109.46792 * 60.00607 * 1 2 3 33 33 H 1.07996 * 119.70567 * 0.02562 * 4 3 2 34 34 H 1.08002 * 119.87269 * 180.02562 * 5 4 3 35 35 H 1.08000 * 120.13250 * 179.97438 * 6 5 4 36 36 H 0.97001 * 119.99700 * 0.02562 * 11 9 8 37 37 H 1.09003 * 109.47743 * 299.99838 * 14 12 11 38 38 H 1.09002 * 109.47112 * 60.00353 * 14 12 11 39 39 H 1.09006 * 109.47389 * 180.02562 * 14 12 11 40 40 H 1.09001 * 109.47289 * 299.99953 * 17 15 12 41 41 H 1.09004 * 109.47261 * 59.99697 * 17 15 12 42 42 H 1.09002 * 109.47153 * 179.97438 * 17 15 12 43 43 H 0.97002 * 120.00030 * 335.00116 * 18 15 12 44 44 H 0.97001 * 120.00462 * 179.97438 * 22 21 19 45 45 H 1.08002 * 125.08016 * 179.76841 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2940 2.3723 -0.0005 5 6 1.9119 3.6131 -0.0011 6 6 3.2876 3.7039 -0.0017 7 6 4.0560 2.5434 -0.0013 8 6 5.5068 2.2688 -0.0021 9 6 6.5972 3.2558 -0.0044 10 8 6.3412 4.4451 -0.0053 11 7 7.8801 2.8426 -0.0045 12 6 8.9663 3.8257 -0.0061 13 1 8.6711 4.6943 0.5824 14 6 9.2593 4.2594 -1.4438 15 6 10.2220 3.1993 0.6037 16 1 10.0409 2.9714 1.6540 17 6 10.5646 1.9104 -0.1462 18 7 11.3397 4.1400 0.4937 19 6 12.3880 4.0634 1.3713 20 1 12.3908 3.3097 2.1448 21 6 13.4468 4.9551 1.2674 22 7 14.4542 4.8817 2.1112 23 14 13.4418 6.2592 -0.0700 24 1 12.7814 7.4879 0.4392 25 1 14.8397 6.5739 -0.4599 26 1 12.7002 5.7526 -1.2527 27 6 5.6256 0.9133 -0.0066 28 8 4.4117 0.3513 -0.0004 29 6 3.4381 1.2859 -0.0002 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 0.2157 2.3114 -0.0005 34 1 1.3133 4.5121 -0.0011 35 1 3.7670 4.6717 -0.0025 36 1 8.0842 1.8943 -0.0033 37 1 9.5547 3.3908 -2.0324 38 1 8.3648 4.7057 -1.8782 39 1 10.0678 4.9906 -1.4451 40 1 9.7330 1.2105 -0.0644 41 1 10.7457 2.1383 -1.1966 42 1 11.4594 1.4644 0.2880 43 1 11.3371 4.8172 -0.2008 44 1 15.1942 5.5046 2.0384 45 1 6.5603 0.3722 -0.0120 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485146689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:58 Heat of formation + Delta-G solvation = -21.182768 kcal Electronic energy + Delta-G solvation = -27868.218226 eV Core-core repulsion = 23853.583328 eV Total energy + Delta-G solvation = -4014.634898 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.90437 -39.92962 -39.60297 -37.32988 -36.95797 -34.08818 -32.96382 -31.77031 -30.70043 -30.03836 -29.08354 -28.61700 -27.68329 -24.79624 -24.13747 -23.31060 -22.68163 -22.16123 -20.28413 -19.42719 -18.72130 -18.10425 -17.78805 -17.08010 -16.83073 -16.12360 -15.85298 -15.70339 -15.40865 -15.25753 -15.01313 -14.53556 -14.15146 -14.03774 -13.76949 -13.59491 -13.26558 -12.78128 -12.73976 -12.65823 -12.60395 -12.19478 -11.79971 -11.78482 -11.68582 -11.61925 -11.55721 -11.14495 -10.92178 -10.63530 -10.37693 -10.09591 -10.06506 -9.96779 -9.59827 -9.02238 -8.98865 -8.93844 -8.18609 -7.34132 -5.80286 -3.17015 0.48529 0.93576 1.50816 2.26844 2.72236 3.12634 3.16814 3.35832 3.39236 3.44592 3.48799 4.04433 4.28989 4.42452 4.56327 4.61139 4.70230 4.77359 4.85192 4.96715 4.97767 5.04981 5.14210 5.24256 5.25302 5.37757 5.54058 5.59915 5.63968 5.75286 5.88602 5.97133 6.01110 6.09598 6.16326 6.22569 6.24841 6.30422 6.42796 6.43604 6.58903 6.71203 6.94117 6.96821 7.54539 7.94520 8.24894 8.38084 9.15785 9.88080 10.06611 11.37647 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029525 B = 0.002248 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.113342 B =12453.309125 C =12984.666000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.144 3.856 4 C -0.191 4.191 5 C -0.092 4.092 6 C -0.097 4.097 7 C -0.051 4.051 8 C -0.228 4.228 9 C 0.586 3.414 10 O -0.533 6.533 11 N -0.715 5.715 12 C 0.135 3.865 13 H 0.092 0.908 14 C -0.162 4.162 15 C 0.173 3.827 16 H 0.062 0.938 17 C -0.169 4.169 18 N -0.743 5.743 19 C -0.245 4.245 20 H 0.091 0.909 21 C 0.007 3.993 22 N -0.932 5.932 23 Si 0.881 3.119 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.277 1.277 27 C 0.072 3.928 28 O -0.172 6.172 29 C 0.018 3.982 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.141 0.859 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.396 0.604 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.068 0.932 40 H 0.034 0.966 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.363 0.637 44 H 0.260 0.740 45 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.030 -10.274 -6.759 31.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.099 3.901 4 C -0.210 4.210 5 C -0.110 4.110 6 C -0.115 4.115 7 C -0.053 4.053 8 C -0.232 4.232 9 C 0.373 3.627 10 O -0.411 6.411 11 N -0.367 5.367 12 C 0.030 3.970 13 H 0.110 0.890 14 C -0.220 4.220 15 C 0.062 3.938 16 H 0.080 0.920 17 C -0.229 4.229 18 N -0.388 5.388 19 C -0.375 4.375 20 H 0.109 0.891 21 C -0.189 4.189 22 N -0.579 5.579 23 Si 0.711 3.289 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.203 1.203 27 C 0.003 3.997 28 O -0.071 6.071 29 C -0.029 4.029 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.160 0.840 36 H 0.232 0.768 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.198 0.802 44 H 0.070 0.930 45 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -29.019 -9.934 -6.556 31.365 hybrid contribution 0.187 0.636 -0.933 1.145 sum -28.832 -9.298 -7.489 31.206 Atomic orbital electron populations 1.23111 0.77885 1.04277 1.01557 1.86147 1.21715 1.26073 1.88818 1.17659 0.86508 0.85593 1.00339 1.20969 0.99934 0.91077 1.08976 1.20890 0.94091 0.97088 0.98969 1.20660 0.92770 0.97944 1.00145 1.19198 0.91054 0.92846 1.02178 1.21040 0.93117 0.93502 1.15585 1.17037 0.81706 0.87425 0.76501 1.90787 1.83747 1.16654 1.49879 1.46033 1.05093 1.10538 1.75052 1.21367 0.86301 0.91967 0.97354 0.88994 1.22179 1.01702 1.01806 0.96357 1.20335 0.85983 0.89685 0.97759 0.92010 1.22516 1.00597 0.98405 1.01431 1.42787 1.20845 1.37403 1.37740 1.19035 0.95877 1.14224 1.08361 0.89097 1.24657 0.96708 0.99059 0.98508 1.69690 1.10111 1.39650 1.38436 0.86612 0.76971 0.82852 0.82442 1.20903 1.21666 1.20273 1.24573 0.87357 0.92261 0.95494 1.83895 1.13385 1.35237 1.74603 1.18599 0.87550 0.86680 1.10034 0.87976 0.92363 0.92385 0.84177 0.84694 0.84044 0.76845 0.92153 0.92621 0.91322 0.94681 0.92842 0.91774 0.80202 0.92992 0.76440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.31 -3.03 10.50 -19.60 -0.21 -3.23 16 3 C 0.14 1.52 6.70 -39.12 -0.26 1.26 16 4 C -0.19 -1.60 9.02 -39.41 -0.36 -1.95 16 5 C -0.09 -0.82 10.03 -39.58 -0.40 -1.22 16 6 C -0.10 -1.13 9.88 -39.37 -0.39 -1.52 16 7 C -0.05 -0.66 6.29 -104.99 -0.66 -1.32 16 8 C -0.23 -2.81 6.31 -103.25 -0.65 -3.46 16 9 C 0.59 8.46 7.77 -12.68 -0.10 8.37 16 10 O -0.53 -9.56 15.94 5.23 0.08 -9.47 16 11 N -0.71 -9.19 4.98 -54.99 -0.27 -9.46 16 12 C 0.13 2.14 2.62 -67.93 -0.18 1.96 16 13 H 0.09 1.67 7.58 -51.93 -0.39 1.28 16 14 C -0.16 -2.49 9.00 37.15 0.33 -2.16 16 15 C 0.17 3.08 2.93 -67.93 -0.20 2.88 16 16 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 17 C -0.17 -2.59 9.01 37.16 0.33 -2.25 16 18 N -0.74 -16.82 4.84 -53.43 -0.26 -17.08 16 19 C -0.25 -6.70 10.41 -15.06 -0.16 -6.86 16 20 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 21 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 22 N -0.93 -28.84 13.97 55.49 0.78 -28.07 16 23 Si 0.88 21.85 27.74 -169.99 -4.71 17.14 16 24 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 27 C 0.07 0.67 11.52 29.95 0.35 1.02 16 28 O -0.17 -1.95 10.53 5.28 0.06 -1.89 16 29 C 0.02 0.22 7.33 -38.45 -0.28 -0.06 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 32 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 33 H 0.14 0.73 6.26 -52.49 -0.33 0.41 16 34 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.14 1.74 7.53 -52.49 -0.40 1.35 16 36 H 0.40 3.87 5.50 -40.82 -0.22 3.65 16 37 H 0.06 0.84 6.57 -51.93 -0.34 0.50 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.15 6.29 -51.93 -0.33 0.82 16 40 H 0.03 0.39 6.29 -51.93 -0.33 0.06 16 41 H 0.05 0.81 6.57 -51.93 -0.34 0.47 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.36 8.15 3.63 -40.82 -0.15 8.00 16 44 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 45 H 0.22 1.02 7.41 -52.49 -0.39 0.63 16 LS Contribution 369.21 15.07 5.56 5.56 Total: -1.00 -35.26 369.21 -6.40 -41.66 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -5.71 Total: 8.95 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -1.72 Total: -4.10 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 0.24 Total: -54.62 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.07 Total: -14.60 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.26 -6.40 -41.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485146689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.480 kcal (2) G-P(sol) polarization free energy of solvation -35.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds