Wall clock time and date at job start Tue Mar 31 2020 18:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35948 * 117.00175 * 2 1 4 4 C 1.38332 * 120.06370 * 359.97438 * 3 2 1 5 5 C 1.38604 * 120.59424 * 180.02562 * 4 3 2 6 6 C 1.37871 * 120.24860 * 359.97438 * 5 4 3 7 7 C 1.39195 * 119.72942 * 0.04112 * 6 5 4 8 8 C 1.47662 * 134.22488 * 179.97438 * 7 6 5 9 9 C 1.47076 * 127.13497 * 359.97350 * 8 7 6 10 10 O 1.21646 * 120.00089 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99786 * 180.02562 * 9 8 7 12 12 C 1.46496 * 119.99867 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.47236 * 324.99587 * 12 11 9 14 14 C 1.52998 * 109.47265 * 84.99704 * 12 11 9 15 15 C 1.53007 * 109.46776 * 204.99688 * 12 11 9 16 16 H 1.09000 * 109.46831 * 299.99625 * 15 12 11 17 17 C 1.52998 * 109.47211 * 59.99983 * 15 12 11 18 18 N 1.46506 * 109.46782 * 180.02562 * 15 12 11 19 19 C 1.36938 * 119.99589 * 155.00217 * 18 15 12 20 20 H 1.07999 * 120.00325 * 359.97438 * 19 18 15 21 21 C 1.38815 * 119.99408 * 179.97438 * 19 18 15 22 22 N 1.31617 * 120.00325 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99550 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47349 * 59.99998 * 23 21 19 25 25 H 1.48505 * 109.47077 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47093 * 299.99919 * 23 21 19 27 27 C 1.36065 * 105.72380 * 180.23773 * 8 7 6 28 28 O 1.33776 * 109.83243 * 359.59633 * 27 8 7 29 29 C 1.34960 * 111.33212 * 0.42577 * 28 27 8 30 30 H 1.09004 * 109.46383 * 299.99812 * 1 2 3 31 31 H 1.08999 * 109.47066 * 59.99592 * 1 2 3 32 32 H 1.09000 * 109.47065 * 180.02562 * 1 2 3 33 33 H 1.08000 * 119.70245 * 0.04746 * 4 3 2 34 34 H 1.07994 * 119.88033 * 180.02562 * 5 4 3 35 35 H 1.08001 * 120.13785 * 180.02562 * 6 5 4 36 36 H 0.96999 * 120.00047 * 359.97438 * 11 9 8 37 37 H 1.09002 * 109.47080 * 179.97438 * 14 12 11 38 38 H 1.08993 * 109.47207 * 300.00033 * 14 12 11 39 39 H 1.09002 * 109.46901 * 60.00077 * 14 12 11 40 40 H 1.09001 * 109.47093 * 179.97438 * 17 15 12 41 41 H 1.09002 * 109.47121 * 299.99744 * 17 15 12 42 42 H 1.09002 * 109.46901 * 59.99641 * 17 15 12 43 43 H 0.96995 * 120.00050 * 334.72425 * 18 15 12 44 44 H 0.97000 * 119.99693 * 180.02562 * 22 21 19 45 45 H 1.08007 * 125.08208 * 179.72388 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2942 2.3723 -0.0005 5 6 1.9120 3.6130 -0.0011 6 6 3.2877 3.7039 -0.0006 7 6 4.0561 2.5432 -0.0003 8 6 5.5070 2.2686 -0.0003 9 6 6.5974 3.2555 -0.0010 10 8 6.3415 4.4448 -0.0013 11 7 7.8803 2.8423 -0.0014 12 6 8.9665 3.8253 -0.0015 13 1 8.6709 4.6933 -0.5908 14 6 9.2606 4.2606 1.4354 15 6 10.2217 3.1982 -0.6115 16 1 10.5173 2.3302 -0.0221 17 6 9.9276 2.7628 -2.0484 18 7 11.3082 4.1811 -0.6111 19 6 12.6115 3.7609 -0.6113 20 1 12.8385 2.7050 -0.6114 21 6 13.6408 4.6922 -0.6115 22 7 13.3642 5.9790 -0.6109 23 14 15.4188 4.1191 -0.6111 24 1 15.6753 3.3006 -1.8233 25 1 16.3195 5.2998 -0.6107 26 1 15.6750 3.3013 0.6016 27 6 5.6257 0.9131 -0.0055 28 8 4.4117 0.3512 0.0002 29 6 3.4381 1.2858 0.0001 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 0.2159 2.3114 -0.0002 34 1 1.3136 4.5120 -0.0011 35 1 3.7673 4.6716 -0.0006 36 1 8.0844 1.8940 -0.0008 37 1 10.0691 4.9917 1.4353 38 1 8.3664 4.7073 1.8700 39 1 9.5562 3.3926 2.0247 40 1 10.8220 2.3165 -2.4831 41 1 9.1195 2.0314 -2.0483 42 1 9.6320 3.6309 -2.6377 43 1 11.1043 5.1293 -0.6147 44 1 14.0835 6.6297 -0.6113 45 1 6.5604 0.3719 -0.0111 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485146693.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:03 Heat of formation + Delta-G solvation = -29.767814 kcal Electronic energy + Delta-G solvation = -27780.635072 eV Core-core repulsion = 23765.627898 eV Total energy + Delta-G solvation = -4015.007174 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.86093 -39.88686 -39.46849 -37.24804 -36.65050 -33.98590 -32.91333 -31.65653 -30.66292 -29.89534 -28.95339 -28.37700 -27.65390 -24.34681 -23.98824 -23.27332 -22.62365 -22.01110 -20.24085 -19.97214 -18.52386 -18.05718 -17.37235 -17.03656 -16.79242 -16.05356 -15.81969 -15.64631 -15.35258 -15.22592 -14.71630 -14.55041 -13.93008 -13.65199 -13.59980 -13.36437 -13.20210 -13.03355 -12.70824 -12.59376 -12.42403 -11.89116 -11.75546 -11.70414 -11.64831 -11.56872 -11.18927 -10.96382 -10.83568 -10.69575 -10.25686 -10.05243 -9.95710 -9.88188 -9.66697 -9.04104 -8.95674 -8.78729 -8.14737 -7.00578 -5.78591 -3.08405 0.52736 0.97375 1.55750 2.30923 2.75563 3.18751 3.25113 3.42557 3.47490 3.48313 3.54386 4.08938 4.34047 4.45517 4.58040 4.64408 4.72307 4.80378 4.89913 5.00473 5.03912 5.07283 5.20269 5.33971 5.48110 5.64199 5.68671 5.74631 5.78968 5.89050 6.04892 6.09702 6.19397 6.20624 6.29756 6.38589 6.41410 6.46555 6.51333 6.61008 6.80651 6.93477 7.00013 7.01947 7.64652 7.66607 8.33712 8.39127 9.50248 10.05401 10.40434 11.43580 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.032816 B = 0.002126 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.046750 B =13170.069220 C =13688.701557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.144 3.856 4 C -0.191 4.191 5 C -0.093 4.093 6 C -0.096 4.096 7 C -0.052 4.052 8 C -0.226 4.226 9 C 0.586 3.414 10 O -0.533 6.533 11 N -0.713 5.713 12 C 0.137 3.863 13 H 0.087 0.913 14 C -0.153 4.153 15 C 0.169 3.831 16 H 0.051 0.949 17 C -0.165 4.165 18 N -0.717 5.717 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.071 3.929 28 O -0.173 6.173 29 C 0.018 3.982 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.394 0.606 37 H 0.081 0.919 38 H 0.047 0.953 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.035 0.965 42 H 0.047 0.953 43 H 0.386 0.614 44 H 0.256 0.744 45 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.700 -11.910 2.025 29.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.098 3.902 4 C -0.210 4.210 5 C -0.111 4.111 6 C -0.115 4.115 7 C -0.053 4.053 8 C -0.231 4.231 9 C 0.373 3.627 10 O -0.411 6.411 11 N -0.363 5.363 12 C 0.033 3.967 13 H 0.105 0.895 14 C -0.211 4.211 15 C 0.058 3.942 16 H 0.069 0.931 17 C -0.225 4.225 18 N -0.360 5.360 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.578 5.578 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C 0.002 3.998 28 O -0.072 6.072 29 C -0.029 4.029 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.160 0.840 36 H 0.228 0.772 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.066 0.934 43 H 0.220 0.780 44 H 0.066 0.934 45 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -26.681 -11.583 2.039 29.159 hybrid contribution 0.958 -0.285 -0.088 1.003 sum -25.723 -11.868 1.952 28.396 Atomic orbital electron populations 1.23109 0.77917 1.04245 1.01551 1.86144 1.21690 1.26103 1.88845 1.17653 0.86513 0.85573 1.00423 1.20962 0.99910 0.91089 1.09011 1.20884 0.94097 0.97074 0.99034 1.20673 0.92763 0.97977 1.00047 1.19212 0.91108 0.92834 1.02158 1.21076 0.93137 0.93529 1.15348 1.17002 0.81668 0.87400 0.76639 1.90787 1.83696 1.16642 1.49948 1.45915 1.05225 1.10363 1.74832 1.21373 0.85962 0.91711 0.97650 0.89488 1.22056 1.01706 1.01982 0.95363 1.20395 0.87095 0.93168 0.93554 0.93133 1.22459 0.99932 1.00179 0.99936 1.42279 1.00690 1.04316 1.88669 1.19134 0.82593 0.92150 1.43220 0.91206 1.24747 0.97917 0.95273 1.02861 1.69651 1.31422 0.99501 1.57227 0.86272 0.84929 0.77175 0.77787 1.21312 1.21717 1.21290 1.24573 0.87318 0.92285 0.95659 1.83892 1.13405 1.35249 1.74671 1.18598 0.87543 0.86702 1.10015 0.92392 0.92375 0.88004 0.84207 0.84704 0.84014 0.77240 0.90010 0.93374 0.93063 0.92608 0.94632 0.93358 0.78012 0.93389 0.76425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.10 10.50 -19.58 -0.21 -3.31 16 3 C 0.14 1.55 6.70 -39.12 -0.26 1.29 16 4 C -0.19 -1.65 9.02 -39.41 -0.36 -2.01 16 5 C -0.09 -0.86 10.03 -39.58 -0.40 -1.25 16 6 C -0.10 -1.16 9.88 -39.36 -0.39 -1.55 16 7 C -0.05 -0.68 6.29 -104.99 -0.66 -1.34 16 8 C -0.23 -2.88 6.31 -103.25 -0.65 -3.53 16 9 C 0.59 8.78 7.77 -12.68 -0.10 8.68 16 10 O -0.53 -9.92 15.94 5.24 0.08 -9.83 16 11 N -0.71 -9.59 4.37 -54.99 -0.24 -9.83 16 12 C 0.14 2.31 2.21 -67.93 -0.15 2.16 16 13 H 0.09 1.66 7.58 -51.93 -0.39 1.27 16 14 C -0.15 -2.62 9.33 37.16 0.35 -2.28 16 15 C 0.17 3.13 2.52 -67.92 -0.17 2.96 16 16 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 17 C -0.16 -2.84 9.34 37.16 0.35 -2.49 16 18 N -0.72 -17.16 4.42 -53.42 -0.24 -17.39 16 19 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 20 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -27.58 13.06 55.49 0.72 -26.85 16 23 Si 0.91 21.98 29.55 -169.99 -5.02 16.95 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 C 0.07 0.68 11.52 29.95 0.34 1.03 16 28 O -0.17 -2.01 10.53 5.26 0.06 -1.96 16 29 C 0.02 0.23 7.33 -38.45 -0.28 -0.06 16 30 H 0.06 0.22 7.66 -51.93 -0.40 -0.17 16 31 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 32 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.14 0.77 6.26 -52.49 -0.33 0.44 16 34 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.14 1.81 7.53 -52.49 -0.40 1.41 16 36 H 0.39 4.00 7.31 -40.82 -0.30 3.70 16 37 H 0.08 1.60 7.45 -51.93 -0.39 1.21 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.03 0.49 7.45 -51.93 -0.39 0.10 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.39 9.98 7.59 -40.82 -0.31 9.67 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.22 1.08 7.41 -52.48 -0.39 0.69 16 LS Contribution 380.05 15.07 5.73 5.73 Total: -1.00 -34.10 380.05 -6.93 -41.03 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -6.19 Total: 9.69 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -1.63 Total: -4.23 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.25 Total: -54.08 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.07 Total: -15.10 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.10 -6.93 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485146693.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.265 kcal (2) G-P(sol) polarization free energy of solvation -34.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds