Wall clock time and date at job start Tue Mar 31 2020 18:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35957 * 116.99625 * 2 1 4 4 C 1.38328 * 120.06133 * 359.97438 * 3 2 1 5 5 C 1.38610 * 120.58317 * 180.02562 * 4 3 2 6 6 C 1.37862 * 120.25624 * 0.21678 * 5 4 3 7 7 C 1.39196 * 119.72530 * 359.56392 * 6 5 4 8 8 C 1.47666 * 134.22121 * 180.11555 * 7 6 5 9 9 C 1.47078 * 127.13725 * 0.25133 * 8 7 6 10 10 O 1.21646 * 119.99643 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99760 * 179.97438 * 9 8 7 12 12 C 1.46494 * 119.99711 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47409 * 324.99767 * 12 11 9 14 14 C 1.53003 * 109.47412 * 85.00511 * 12 11 9 15 15 C 1.53008 * 109.46926 * 205.00090 * 12 11 9 16 16 H 1.09005 * 109.46790 * 65.00554 * 15 12 11 17 17 C 1.52994 * 109.46950 * 305.00153 * 15 12 11 18 18 N 1.46500 * 109.46997 * 184.99900 * 15 12 11 19 19 C 1.36933 * 119.99930 * 205.00022 * 18 15 12 20 20 H 1.08002 * 120.00291 * 0.02562 * 19 18 15 21 21 C 1.38814 * 120.00115 * 179.97438 * 19 18 15 22 22 N 1.31619 * 119.99702 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99971 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47171 * 60.00497 * 23 21 19 25 25 H 1.48504 * 109.46699 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47333 * 300.00241 * 23 21 19 27 27 C 1.36070 * 105.72362 * 180.28997 * 8 7 6 28 28 O 1.33773 * 109.83013 * 359.97438 * 27 8 7 29 29 C 1.34957 * 111.33687 * 0.02562 * 28 27 8 30 30 H 1.09000 * 109.47020 * 300.00329 * 1 2 3 31 31 H 1.08997 * 109.46923 * 59.99759 * 1 2 3 32 32 H 1.08999 * 109.46642 * 180.02562 * 1 2 3 33 33 H 1.08000 * 119.71260 * 0.04017 * 4 3 2 34 34 H 1.08000 * 119.87278 * 180.02562 * 5 4 3 35 35 H 1.07996 * 120.14233 * 179.72810 * 6 5 4 36 36 H 0.97000 * 119.99769 * 0.02562 * 11 9 8 37 37 H 1.09003 * 109.46583 * 299.99598 * 14 12 11 38 38 H 1.08996 * 109.47021 * 59.99411 * 14 12 11 39 39 H 1.08999 * 109.47064 * 180.02562 * 14 12 11 40 40 H 1.08998 * 109.47117 * 299.99563 * 17 15 12 41 41 H 1.08998 * 109.47350 * 60.00022 * 17 15 12 42 42 H 1.09007 * 109.46747 * 179.97438 * 17 15 12 43 43 H 0.96994 * 120.00140 * 25.00250 * 18 15 12 44 44 H 0.96999 * 119.99544 * 179.97438 * 22 21 19 45 45 H 1.07996 * 125.08590 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2940 2.3723 -0.0005 5 6 1.9119 3.6130 -0.0011 6 6 3.2875 3.7040 -0.0056 7 6 4.0559 2.5434 -0.0004 8 6 5.5069 2.2689 -0.0007 9 6 6.5973 3.2559 -0.0020 10 8 6.3412 4.4451 -0.0025 11 7 7.8802 2.8427 -0.0016 12 6 8.9663 3.8258 -0.0023 13 1 8.6708 4.6932 -0.5925 14 6 9.2600 4.2624 1.4344 15 6 10.2218 3.1982 -0.6114 16 1 10.0402 2.9683 -1.6613 17 6 10.5646 1.9108 0.1408 18 7 11.3394 4.1392 -0.5038 19 6 12.3874 4.0608 -1.3817 20 1 12.3898 3.3055 -2.1537 21 6 13.4462 4.9527 -1.2800 22 7 13.4430 5.8734 -0.3395 23 14 14.8761 4.8453 -2.4772 24 1 14.3772 5.0371 -3.8627 25 1 15.8696 5.9017 -2.1576 26 1 15.5185 3.5114 -2.3627 27 6 5.6257 0.9134 -0.0004 28 8 4.4117 0.3514 0.0007 29 6 3.4380 1.2859 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3632 -1.0277 0.0005 33 1 0.2157 2.3115 -0.0003 34 1 1.3134 4.5120 -0.0011 35 1 3.7670 4.6716 -0.0104 36 1 8.0842 1.8944 -0.0008 37 1 8.3656 4.7095 1.8682 38 1 9.5555 3.3949 2.0245 39 1 10.0679 4.9942 1.4337 40 1 10.7462 2.1408 1.1907 41 1 9.7331 1.2107 0.0608 42 1 11.4588 1.4635 -0.2934 43 1 11.3372 4.8177 0.1894 44 1 14.1831 6.4965 -0.2683 45 1 6.5603 0.3721 0.0000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485146696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:07 Heat of formation + Delta-G solvation = -25.327257 kcal Electronic energy + Delta-G solvation = -27789.403620 eV Core-core repulsion = 23774.589003 eV Total energy + Delta-G solvation = -4014.814617 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.86198 -39.88935 -39.50459 -37.26808 -36.80523 -33.96729 -32.91653 -31.68436 -30.66050 -29.80474 -28.88018 -28.22831 -27.65499 -24.66815 -24.15946 -23.35191 -22.68865 -22.25952 -20.22681 -19.33032 -18.53026 -18.06008 -17.40571 -17.04238 -16.79321 -16.07106 -15.81923 -15.61721 -15.32712 -15.21541 -14.84514 -14.48907 -14.16881 -13.93458 -13.61599 -13.51674 -13.19420 -12.81846 -12.70801 -12.56351 -12.46204 -11.99599 -11.75259 -11.66022 -11.64073 -11.57238 -11.31627 -10.94946 -10.83038 -10.49635 -10.29227 -10.05176 -10.00970 -9.90835 -9.65127 -8.96847 -8.94968 -8.83742 -8.14763 -7.01939 -5.79226 -3.08917 0.52645 0.97401 1.55651 2.30729 2.75672 3.18641 3.25899 3.43141 3.47851 3.48610 3.54271 4.08781 4.34091 4.45642 4.57832 4.64436 4.72388 4.80442 4.89932 5.00457 5.04286 5.07399 5.21095 5.36540 5.46316 5.59274 5.62734 5.68536 5.79084 5.81813 6.04600 6.05551 6.13618 6.20459 6.27166 6.29801 6.37846 6.45107 6.47043 6.61507 6.69903 6.89948 7.00133 7.05577 7.64344 7.67207 8.33706 8.39448 9.50435 10.05548 10.40369 11.43197 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029492 B = 0.002133 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.195473 B =13124.780561 C =13538.562399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.144 3.856 4 C -0.191 4.191 5 C -0.093 4.093 6 C -0.096 4.096 7 C -0.052 4.052 8 C -0.226 4.226 9 C 0.585 3.415 10 O -0.533 6.533 11 N -0.715 5.715 12 C 0.138 3.862 13 H 0.090 0.910 14 C -0.160 4.160 15 C 0.167 3.833 16 H 0.052 0.948 17 C -0.169 4.169 18 N -0.719 5.719 19 C -0.242 4.242 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.070 3.930 28 O -0.173 6.173 29 C 0.018 3.982 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.394 0.606 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.031 0.969 42 H 0.058 0.942 43 H 0.387 0.613 44 H 0.256 0.744 45 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.453 -12.206 2.804 29.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.098 3.902 4 C -0.210 4.210 5 C -0.111 4.111 6 C -0.114 4.114 7 C -0.053 4.053 8 C -0.231 4.231 9 C 0.372 3.628 10 O -0.410 6.410 11 N -0.367 5.367 12 C 0.033 3.967 13 H 0.108 0.892 14 C -0.218 4.218 15 C 0.057 3.943 16 H 0.070 0.930 17 C -0.229 4.229 18 N -0.362 5.362 19 C -0.373 4.373 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.579 5.579 23 Si 0.739 3.261 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.213 1.213 27 C 0.001 3.999 28 O -0.072 6.072 29 C -0.029 4.029 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.160 0.840 36 H 0.230 0.770 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.050 0.950 42 H 0.077 0.923 43 H 0.223 0.777 44 H 0.066 0.934 45 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -26.476 -11.822 2.667 29.118 hybrid contribution 0.861 -0.156 -0.385 0.957 sum -25.615 -11.978 2.282 28.369 Atomic orbital electron populations 1.23108 0.77919 1.04243 1.01552 1.86147 1.21689 1.26097 1.88849 1.17653 0.86505 0.85575 1.00428 1.20963 0.99910 0.91085 1.09000 1.20885 0.94096 0.97077 0.99031 1.20672 0.92764 0.97979 1.00033 1.19212 0.91091 0.92841 1.02164 1.21083 0.93152 0.93529 1.15328 1.17038 0.81747 0.87412 0.76641 1.90787 1.83735 1.16640 1.49881 1.46092 1.05174 1.10558 1.74896 1.21366 0.86012 0.91665 0.97622 0.89180 1.22148 1.01861 1.01863 0.95917 1.20367 0.86868 0.90109 0.96989 0.92986 1.22546 1.00071 0.98564 1.01708 1.42437 1.18975 1.36702 1.38113 1.19170 0.97049 1.12639 1.08427 0.91175 1.24751 0.98901 0.98172 0.98973 1.69648 1.32911 1.20675 1.34678 0.86254 0.82229 0.76997 0.80595 1.21248 1.21694 1.21290 1.24563 0.87315 0.92285 0.95702 1.83890 1.13391 1.35246 1.74668 1.18597 0.87545 0.86700 1.10012 0.92392 0.92375 0.88005 0.84199 0.84699 0.84004 0.77015 0.93019 0.92512 0.90415 0.92715 0.95045 0.92304 0.77739 0.93373 0.76472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.11 10.50 -19.61 -0.21 -3.31 16 3 C 0.14 1.56 6.70 -39.12 -0.26 1.29 16 4 C -0.19 -1.65 9.02 -39.41 -0.36 -2.01 16 5 C -0.09 -0.86 10.03 -39.58 -0.40 -1.26 16 6 C -0.10 -1.17 9.88 -39.36 -0.39 -1.56 16 7 C -0.05 -0.68 6.29 -104.99 -0.66 -1.34 16 8 C -0.23 -2.91 6.31 -103.24 -0.65 -3.56 16 9 C 0.58 8.87 7.77 -12.67 -0.10 8.77 16 10 O -0.53 -9.99 15.94 5.24 0.08 -9.91 16 11 N -0.71 -9.79 4.98 -54.99 -0.27 -10.06 16 12 C 0.14 2.34 2.62 -67.93 -0.18 2.16 16 13 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 14 C -0.16 -2.68 9.00 37.16 0.33 -2.34 16 15 C 0.17 3.14 2.93 -67.93 -0.20 2.94 16 16 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 17 C -0.17 -2.70 9.01 37.15 0.33 -2.37 16 18 N -0.72 -17.34 5.03 -53.42 -0.27 -17.60 16 19 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -27.70 13.06 55.49 0.72 -26.97 16 23 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 C 0.07 0.69 11.52 29.95 0.35 1.03 16 28 O -0.17 -2.02 10.53 5.28 0.06 -1.96 16 29 C 0.02 0.23 7.33 -38.45 -0.28 -0.06 16 30 H 0.06 0.22 7.66 -51.93 -0.40 -0.17 16 31 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 32 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.14 0.77 6.26 -52.49 -0.33 0.44 16 34 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.14 1.81 7.53 -52.49 -0.40 1.42 16 36 H 0.39 4.16 5.50 -40.82 -0.22 3.94 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.87 6.56 -51.93 -0.34 0.53 16 39 H 0.08 1.45 6.29 -51.93 -0.33 1.13 16 40 H 0.05 0.89 6.56 -51.93 -0.34 0.55 16 41 H 0.03 0.37 6.29 -51.93 -0.33 0.05 16 42 H 0.06 1.04 8.14 -51.92 -0.42 0.61 16 43 H 0.39 9.88 5.77 -40.82 -0.24 9.64 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 45 H 0.22 1.12 7.41 -52.49 -0.39 0.73 16 LS Contribution 372.33 15.07 5.61 5.61 Total: -1.00 -34.35 372.33 -6.76 -41.12 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -5.75 Total: 10.27 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -1.71 Total: -4.27 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.18 Total: -54.64 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.07 Total: -15.19 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.35 -6.76 -41.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485146696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.789 kcal (2) G-P(sol) polarization free energy of solvation -34.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds