Wall clock time and date at job start Tue Mar 31 2020 18:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35957 * 116.99625 * 2 1 4 4 C 1.38328 * 120.06133 * 359.97438 * 3 2 1 5 5 C 1.38610 * 120.58317 * 180.02562 * 4 3 2 6 6 C 1.37862 * 120.25624 * 0.21678 * 5 4 3 7 7 C 1.39196 * 119.72530 * 359.56392 * 6 5 4 8 8 C 1.47666 * 134.22121 * 180.11555 * 7 6 5 9 9 C 1.47078 * 127.13725 * 0.25133 * 8 7 6 10 10 O 1.21646 * 119.99643 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99760 * 179.97438 * 9 8 7 12 12 C 1.46494 * 119.99711 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47409 * 324.99767 * 12 11 9 14 14 C 1.53003 * 109.47412 * 85.00511 * 12 11 9 15 15 C 1.53008 * 109.46926 * 205.00090 * 12 11 9 16 16 H 1.09005 * 109.46790 * 65.00554 * 15 12 11 17 17 C 1.52994 * 109.46950 * 305.00153 * 15 12 11 18 18 N 1.46500 * 109.46997 * 184.99900 * 15 12 11 19 19 C 1.36933 * 119.99930 * 205.00022 * 18 15 12 20 20 H 1.08002 * 120.00291 * 0.02562 * 19 18 15 21 21 C 1.38814 * 120.00115 * 179.97438 * 19 18 15 22 22 N 1.31619 * 119.99702 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99971 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47171 * 60.00497 * 23 21 19 25 25 H 1.48504 * 109.46699 * 180.02562 * 23 21 19 26 26 H 1.48493 * 109.47333 * 300.00241 * 23 21 19 27 27 C 1.36070 * 105.72362 * 180.28997 * 8 7 6 28 28 O 1.33773 * 109.83013 * 359.97438 * 27 8 7 29 29 C 1.34957 * 111.33687 * 0.02562 * 28 27 8 30 30 H 1.09000 * 109.47020 * 300.00329 * 1 2 3 31 31 H 1.08997 * 109.46923 * 59.99759 * 1 2 3 32 32 H 1.08999 * 109.46642 * 180.02562 * 1 2 3 33 33 H 1.08000 * 119.71260 * 0.04017 * 4 3 2 34 34 H 1.08000 * 119.87278 * 180.02562 * 5 4 3 35 35 H 1.07996 * 120.14233 * 179.72810 * 6 5 4 36 36 H 0.97000 * 119.99769 * 0.02562 * 11 9 8 37 37 H 1.09003 * 109.46583 * 299.99598 * 14 12 11 38 38 H 1.08996 * 109.47021 * 59.99411 * 14 12 11 39 39 H 1.08999 * 109.47064 * 180.02562 * 14 12 11 40 40 H 1.08998 * 109.47117 * 299.99563 * 17 15 12 41 41 H 1.08998 * 109.47350 * 60.00022 * 17 15 12 42 42 H 1.09007 * 109.46747 * 179.97438 * 17 15 12 43 43 H 0.96994 * 120.00140 * 25.00250 * 18 15 12 44 44 H 0.96999 * 119.99544 * 179.97438 * 22 21 19 45 45 H 1.07996 * 125.08590 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2940 2.3723 -0.0005 5 6 1.9119 3.6130 -0.0011 6 6 3.2875 3.7040 -0.0056 7 6 4.0559 2.5434 -0.0004 8 6 5.5069 2.2689 -0.0007 9 6 6.5973 3.2559 -0.0020 10 8 6.3412 4.4451 -0.0025 11 7 7.8802 2.8427 -0.0016 12 6 8.9663 3.8258 -0.0023 13 1 8.6708 4.6932 -0.5925 14 6 9.2600 4.2624 1.4344 15 6 10.2218 3.1982 -0.6114 16 1 10.0402 2.9683 -1.6613 17 6 10.5646 1.9108 0.1408 18 7 11.3394 4.1392 -0.5038 19 6 12.3874 4.0608 -1.3817 20 1 12.3898 3.3055 -2.1537 21 6 13.4462 4.9527 -1.2800 22 7 13.4430 5.8734 -0.3395 23 14 14.8761 4.8453 -2.4772 24 1 14.3772 5.0371 -3.8627 25 1 15.8696 5.9017 -2.1576 26 1 15.5185 3.5114 -2.3627 27 6 5.6257 0.9134 -0.0004 28 8 4.4117 0.3514 0.0007 29 6 3.4380 1.2859 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3632 -1.0277 0.0005 33 1 0.2157 2.3115 -0.0003 34 1 1.3134 4.5120 -0.0011 35 1 3.7670 4.6716 -0.0104 36 1 8.0842 1.8944 -0.0008 37 1 8.3656 4.7095 1.8682 38 1 9.5555 3.3949 2.0245 39 1 10.0679 4.9942 1.4337 40 1 10.7462 2.1408 1.1907 41 1 9.7331 1.2107 0.0608 42 1 11.4588 1.4635 -0.2934 43 1 11.3372 4.8177 0.1894 44 1 14.1831 6.4965 -0.2683 45 1 6.5603 0.3721 0.0000 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485146696.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:06 Heat of formation + Delta-G solvation = -49.364693 kcal Electronic energy + Delta-G solvation = -27790.445961 eV Core-core repulsion = 23774.589003 eV Total energy + Delta-G solvation = -4015.856958 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.70267 -40.85427 -40.49398 -38.42053 -37.89746 -35.61373 -34.08047 -33.20355 -31.43639 -31.09204 -29.98234 -29.76074 -28.14197 -26.16700 -25.65662 -24.42602 -23.71174 -23.20003 -21.29786 -20.70444 -19.66205 -19.25273 -18.84104 -17.77022 -17.60431 -17.12768 -16.81379 -16.60266 -16.43026 -16.21214 -16.03523 -15.89958 -15.65670 -15.24615 -15.08550 -14.51882 -14.28742 -14.02840 -13.90610 -13.49512 -13.35725 -13.21473 -13.08565 -12.99236 -12.76051 -12.62573 -12.50295 -12.26001 -12.21145 -12.17262 -12.00535 -11.65224 -11.58891 -11.12921 -10.92814 -10.90502 -10.14860 -9.74982 -9.01599 -8.94716 -7.91981 -5.20669 -0.27675 0.16013 0.66053 1.49007 1.51786 1.53708 1.57601 1.95871 2.17076 2.26435 2.59569 2.64404 3.34362 3.41671 3.44469 3.81292 3.88079 3.98373 3.99179 4.08797 4.10666 4.18026 4.28542 4.34481 4.40348 4.43229 4.48314 4.62210 4.71323 4.77290 4.88825 4.89380 4.98296 5.04228 5.04711 5.22272 5.24395 5.27502 5.42256 5.47993 5.50965 5.56025 5.66845 5.69904 6.29928 6.31895 6.53550 7.19983 7.36593 8.11329 8.34017 9.31303 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.029492 B = 0.002133 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.195473 B =13124.780561 C =13538.562399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.333 6.333 3 C 0.141 3.859 4 C -0.185 4.185 5 C -0.079 4.079 6 C -0.130 4.130 7 C -0.073 4.073 8 C -0.266 4.266 9 C 0.588 3.412 10 O -0.579 6.579 11 N -0.699 5.699 12 C 0.152 3.848 13 H 0.057 0.943 14 C -0.150 4.150 15 C 0.165 3.835 16 H 0.049 0.951 17 C -0.159 4.159 18 N -0.734 5.734 19 C -0.237 4.237 20 H 0.078 0.922 21 C -0.077 4.077 22 N -0.969 5.969 23 Si 0.972 3.028 24 H -0.280 1.280 25 H -0.299 1.299 26 H -0.276 1.276 27 C 0.109 3.891 28 O -0.177 6.177 29 C -0.008 4.008 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.119 0.881 33 H 0.177 0.823 34 H 0.164 0.836 35 H 0.122 0.878 36 H 0.413 0.587 37 H 0.048 0.952 38 H 0.075 0.925 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.081 0.919 42 H 0.044 0.956 43 H 0.376 0.624 44 H 0.250 0.750 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.406 -15.150 2.527 32.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.247 6.247 3 C 0.095 3.905 4 C -0.203 4.203 5 C -0.097 4.097 6 C -0.148 4.148 7 C -0.074 4.074 8 C -0.270 4.270 9 C 0.377 3.623 10 O -0.460 6.460 11 N -0.352 5.352 12 C 0.047 3.953 13 H 0.075 0.925 14 C -0.209 4.209 15 C 0.056 3.944 16 H 0.067 0.933 17 C -0.219 4.219 18 N -0.377 5.377 19 C -0.369 4.369 20 H 0.096 0.904 21 C -0.269 4.269 22 N -0.620 5.620 23 Si 0.801 3.199 24 H -0.207 1.207 25 H -0.225 1.225 26 H -0.202 1.202 27 C 0.040 3.960 28 O -0.076 6.076 29 C -0.055 4.055 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.138 0.862 33 H 0.194 0.806 34 H 0.181 0.819 35 H 0.140 0.860 36 H 0.252 0.748 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.099 0.901 42 H 0.063 0.937 43 H 0.210 0.790 44 H 0.059 0.941 45 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -28.476 -14.857 2.376 32.206 hybrid contribution 1.251 0.664 -0.308 1.449 sum -27.225 -14.193 2.068 30.772 Atomic orbital electron populations 1.23469 0.75475 1.06017 1.02937 1.86126 1.24252 1.25747 1.88605 1.17918 0.86254 0.86647 0.99694 1.21361 1.01560 0.89934 1.07441 1.21236 0.93084 0.98694 0.96668 1.20717 0.94249 0.97092 1.02741 1.19471 0.91631 0.93639 1.02694 1.20867 0.92393 0.94388 1.19401 1.17336 0.82292 0.87248 0.75420 1.90764 1.84368 1.18786 1.52065 1.45755 1.04015 1.10844 1.74613 1.20907 0.86152 0.91280 0.97000 0.92487 1.22038 1.00820 1.01968 0.96032 1.20551 0.85886 0.90471 0.97498 0.93319 1.22377 1.01399 0.97448 1.00682 1.42649 1.19902 1.37666 1.37441 1.19574 0.97334 1.11788 1.08200 0.90373 1.25549 1.01792 0.98563 1.01040 1.69812 1.33532 1.21871 1.36790 0.85231 0.79082 0.76934 0.78611 1.20680 1.22537 1.20200 1.25380 0.88104 0.91300 0.91227 1.83902 1.13870 1.35341 1.74472 1.18866 0.88493 0.86405 1.11692 0.90918 0.90956 0.86241 0.80590 0.81854 0.85992 0.74807 0.93243 0.90585 0.92846 0.92912 0.90092 0.93707 0.78976 0.94136 0.71725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.22 16 2 O -0.33 -5.88 10.50 -93.07 -0.98 -6.86 16 3 C 0.14 2.81 6.70 22.57 0.15 2.96 16 4 C -0.18 -2.76 9.02 22.38 0.20 -2.56 16 5 C -0.08 -1.36 10.03 22.27 0.22 -1.14 16 6 C -0.13 -3.25 9.88 22.41 0.22 -3.03 16 7 C -0.07 -1.95 6.29 -20.10 -0.13 -2.08 16 8 C -0.27 -6.70 6.31 -18.97 -0.12 -6.82 16 9 C 0.59 17.95 7.77 86.56 0.67 18.62 16 10 O -0.58 -22.87 15.94 -4.18 -0.07 -22.93 16 11 N -0.70 -18.28 4.98 -446.12 -2.22 -20.50 16 12 C 0.15 5.19 2.62 45.00 0.12 5.31 16 13 H 0.06 2.34 7.58 -2.39 -0.02 2.33 16 14 C -0.15 -5.10 9.00 71.98 0.65 -4.45 16 15 C 0.16 6.08 2.93 44.99 0.13 6.21 16 16 H 0.05 1.84 8.08 -2.38 -0.02 1.82 16 17 C -0.16 -4.71 9.01 71.98 0.65 -4.06 16 18 N -0.73 -35.89 5.03 -322.93 -1.63 -37.51 16 19 C -0.24 -12.85 9.93 84.03 0.83 -12.02 16 20 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 21 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 22 N -0.97 -59.21 13.06 21.65 0.28 -58.93 16 23 Si 0.97 45.91 29.55 68.60 2.03 47.94 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 26 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 27 C 0.11 1.85 11.52 67.32 0.78 2.63 16 28 O -0.18 -3.81 10.53 -4.03 -0.04 -3.85 16 29 C -0.01 -0.20 7.33 23.00 0.17 -0.03 16 30 H 0.07 0.31 7.66 -2.39 -0.02 0.29 16 31 H 0.07 0.31 7.66 -2.39 -0.02 0.30 16 32 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.18 1.24 6.26 -2.91 -0.02 1.22 16 34 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.12 3.43 7.53 -2.91 -0.02 3.41 16 36 H 0.41 7.35 5.50 -92.71 -0.51 6.84 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.08 2.25 6.56 -2.39 -0.02 2.24 16 39 H 0.05 2.08 6.29 -2.39 -0.02 2.07 16 40 H 0.05 1.60 6.56 -2.39 -0.02 1.58 16 41 H 0.08 1.57 6.29 -2.39 -0.02 1.55 16 42 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 43 H 0.38 19.87 5.77 -92.71 -0.54 19.33 16 44 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 45 H 0.27 1.43 7.41 -2.91 -0.02 1.41 16 Total: -1.00 -79.09 372.33 3.51 -75.58 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: 0.00 Total: 30.22 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 6.13 Total: -3.16 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -3.56 Total: -116.94 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -1.09 Total: -33.64 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -79.09 3.51 -75.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485146696.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.217 kcal (2) G-P(sol) polarization free energy of solvation -79.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds