Wall clock time and date at job start Tue Mar 31 2020 18:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35955 * 117.00139 * 2 1 4 4 C 1.38327 * 120.05886 * 359.97438 * 3 2 1 5 5 C 1.38615 * 120.58351 * 180.02562 * 4 3 2 6 6 C 1.37865 * 120.25188 * 359.97438 * 5 4 3 7 7 C 1.39189 * 119.73296 * 0.04152 * 6 5 4 8 8 C 1.47652 * 134.22612 * 179.97438 * 7 6 5 9 9 C 1.47080 * 127.13749 * 359.97438 * 8 7 6 10 10 O 1.21653 * 119.99945 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99866 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99685 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.47741 * 34.99707 * 12 11 9 14 14 C 1.53002 * 109.47180 * 274.99474 * 12 11 9 15 15 C 1.53004 * 109.47229 * 154.99805 * 12 11 9 16 16 H 1.08995 * 109.47216 * 59.99734 * 15 12 11 17 17 C 1.52999 * 109.47083 * 299.99730 * 15 12 11 18 18 N 1.46498 * 109.47065 * 179.97438 * 15 12 11 19 19 C 1.36943 * 119.99752 * 204.72207 * 18 15 12 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 15 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 15 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47213 * 60.00246 * 23 21 19 25 25 H 1.48502 * 109.47317 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47081 * 299.99875 * 23 21 19 27 27 C 1.36073 * 105.72697 * 180.23657 * 8 7 6 28 28 O 1.33773 * 109.82774 * 359.60084 * 27 8 7 29 29 C 1.34957 * 111.33613 * 0.42299 * 28 27 8 30 30 H 1.08997 * 109.46907 * 59.99738 * 1 2 3 31 31 H 1.08994 * 109.47112 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46627 * 300.00239 * 1 2 3 33 33 H 1.07994 * 119.71305 * 0.04078 * 4 3 2 34 34 H 1.08003 * 119.87039 * 179.97438 * 5 4 3 35 35 H 1.08001 * 120.12935 * 180.02562 * 6 5 4 36 36 H 0.97000 * 120.00523 * 359.97438 * 11 9 8 37 37 H 1.08994 * 109.46974 * 300.00703 * 14 12 11 38 38 H 1.09003 * 109.46657 * 59.99844 * 14 12 11 39 39 H 1.08994 * 109.47387 * 180.02562 * 14 12 11 40 40 H 1.08995 * 109.47098 * 300.00077 * 17 15 12 41 41 H 1.09003 * 109.47054 * 59.99725 * 17 15 12 42 42 H 1.08996 * 109.47245 * 179.97438 * 17 15 12 43 43 H 0.97001 * 120.00384 * 25.00562 * 18 15 12 44 44 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 45 45 H 1.08001 * 125.08556 * 179.72065 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2941 2.3723 -0.0005 5 6 1.9121 3.6130 -0.0011 6 6 3.2878 3.7038 -0.0006 7 6 4.0562 2.5432 -0.0004 8 6 5.5069 2.2686 -0.0003 9 6 6.5974 3.2555 -0.0010 10 8 6.3415 4.4448 -0.0012 11 7 7.8803 2.8423 -0.0014 12 6 8.9665 3.8253 -0.0015 13 1 8.6712 4.6932 0.5881 14 6 9.2600 4.2609 -1.4385 15 6 10.2220 3.1982 0.6078 16 1 10.5174 2.3303 0.0183 17 6 9.9286 2.7626 2.0448 18 7 11.3084 4.1810 0.6071 19 6 12.6118 3.7609 0.6124 20 1 12.8388 2.7050 0.6126 21 6 13.6411 4.6922 0.6176 22 7 13.3643 5.9790 0.6179 23 14 15.4190 4.1192 0.6241 24 1 15.6803 3.3024 -0.5883 25 1 16.3196 5.2999 0.6297 26 1 15.6705 3.2998 1.8368 27 6 5.6257 0.9131 -0.0055 28 8 4.4118 0.3512 0.0002 29 6 3.4381 1.2857 0.0000 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.2159 2.3115 -0.0003 34 1 1.3136 4.5121 -0.0019 35 1 3.7672 4.6716 -0.0006 36 1 8.0844 1.8940 -0.0008 37 1 9.5552 3.3930 -2.0281 38 1 8.3655 4.7076 -1.8726 39 1 10.0684 4.9919 -1.4387 40 1 9.6333 3.6305 2.6344 41 1 9.1204 2.0312 2.0450 42 1 10.8229 2.3154 2.4788 43 1 11.1045 5.1294 0.6070 44 1 14.0836 6.6298 0.6211 45 1 6.5603 0.3719 -0.0112 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485146699.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:11 Heat of formation + Delta-G solvation = -29.763519 kcal Electronic energy + Delta-G solvation = -27780.273872 eV Core-core repulsion = 23765.266884 eV Total energy + Delta-G solvation = -4015.006988 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.86168 -39.88663 -39.46828 -37.24825 -36.65087 -33.98579 -32.91343 -31.65609 -30.66283 -29.89596 -28.95480 -28.37571 -27.65401 -24.34735 -23.98979 -23.27343 -22.62446 -22.01102 -20.24114 -19.97173 -18.52390 -18.05744 -17.37264 -17.03706 -16.79293 -16.05388 -15.82032 -15.64557 -15.35443 -15.22613 -14.71494 -14.55024 -13.93126 -13.65389 -13.59989 -13.36464 -13.20061 -13.03463 -12.70825 -12.59416 -12.42442 -11.89024 -11.75579 -11.70553 -11.64819 -11.56848 -11.19019 -10.96402 -10.83590 -10.69529 -10.25708 -10.05344 -9.95680 -9.88159 -9.66678 -9.04053 -8.95651 -8.78799 -8.14782 -7.00513 -5.78576 -3.08408 0.52703 0.97331 1.55737 2.30859 2.75561 3.18689 3.25039 3.42562 3.47486 3.48323 3.54349 4.08933 4.34014 4.45531 4.58063 4.64393 4.72312 4.80385 4.89888 5.00461 5.03866 5.07305 5.20219 5.33921 5.48091 5.64143 5.68604 5.74557 5.78955 5.88990 6.04875 6.09739 6.19283 6.20596 6.29722 6.38573 6.41369 6.46546 6.51287 6.61009 6.80595 6.93361 6.99997 7.02034 7.64588 7.66605 8.33644 8.39184 9.50251 10.05412 10.40408 11.43608 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.032812 B = 0.002125 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.147411 B =13171.312065 C =13690.103809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.144 3.856 4 C -0.191 4.191 5 C -0.093 4.093 6 C -0.096 4.096 7 C -0.052 4.052 8 C -0.226 4.226 9 C 0.586 3.414 10 O -0.533 6.533 11 N -0.713 5.713 12 C 0.137 3.863 13 H 0.087 0.913 14 C -0.153 4.153 15 C 0.169 3.831 16 H 0.051 0.949 17 C -0.165 4.165 18 N -0.718 5.718 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.071 3.929 28 O -0.173 6.173 29 C 0.018 3.982 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.058 0.942 33 H 0.140 0.860 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.394 0.606 37 H 0.050 0.950 38 H 0.047 0.953 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.035 0.965 42 H 0.055 0.945 43 H 0.386 0.614 44 H 0.256 0.744 45 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.702 -11.910 -2.080 29.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.098 3.902 4 C -0.210 4.210 5 C -0.111 4.111 6 C -0.115 4.115 7 C -0.053 4.053 8 C -0.231 4.231 9 C 0.373 3.627 10 O -0.411 6.411 11 N -0.363 5.363 12 C 0.033 3.967 13 H 0.105 0.895 14 C -0.211 4.211 15 C 0.058 3.942 16 H 0.068 0.932 17 C -0.225 4.225 18 N -0.360 5.360 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.578 5.578 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C 0.002 3.998 28 O -0.072 6.072 29 C -0.029 4.029 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.076 0.924 33 H 0.158 0.842 34 H 0.153 0.847 35 H 0.160 0.840 36 H 0.228 0.772 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.220 0.780 44 H 0.066 0.934 45 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -26.684 -11.584 -2.091 29.165 hybrid contribution 0.958 -0.285 0.095 1.004 sum -25.726 -11.869 -1.996 28.402 Atomic orbital electron populations 1.23107 0.77919 1.04244 1.01551 1.86145 1.21689 1.26104 1.88848 1.17653 0.86511 0.85572 1.00424 1.20963 0.99910 0.91088 1.09009 1.20888 0.94097 0.97074 0.99033 1.20669 0.92763 0.97978 1.00047 1.19210 0.91108 0.92834 1.02159 1.21075 0.93136 0.93528 1.15348 1.17004 0.81667 0.87401 0.76637 1.90789 1.83698 1.16638 1.49951 1.45914 1.05224 1.10363 1.74831 1.21370 0.85961 0.91709 0.97650 0.89485 1.22056 1.01707 1.01979 0.95363 1.20392 0.87093 0.93163 0.93557 0.93153 1.22457 0.99933 1.00175 0.99940 1.42281 1.00691 1.04315 1.88675 1.19134 0.82593 0.92150 1.43209 0.91208 1.24748 0.97921 0.95276 1.02864 1.69654 1.31423 0.99497 1.57234 0.86269 0.84920 0.77172 0.77787 1.21285 1.21718 1.21318 1.24574 0.87317 0.92283 0.95664 1.83890 1.13405 1.35253 1.74663 1.18598 0.87544 0.86701 1.10015 0.92385 0.88005 0.92384 0.84204 0.84703 0.84015 0.77236 0.93060 0.93369 0.90016 0.93351 0.94643 0.92607 0.78010 0.93391 0.76425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.13 16 2 O -0.31 -3.10 10.50 -19.60 -0.21 -3.31 16 3 C 0.14 1.55 6.70 -39.12 -0.26 1.29 16 4 C -0.19 -1.65 9.02 -39.41 -0.36 -2.01 16 5 C -0.09 -0.86 10.03 -39.58 -0.40 -1.25 16 6 C -0.10 -1.16 9.88 -39.36 -0.39 -1.55 16 7 C -0.05 -0.68 6.29 -105.00 -0.66 -1.34 16 8 C -0.23 -2.88 6.31 -103.25 -0.65 -3.53 16 9 C 0.59 8.78 7.77 -12.68 -0.10 8.68 16 10 O -0.53 -9.92 15.94 5.23 0.08 -9.83 16 11 N -0.71 -9.59 4.37 -54.99 -0.24 -9.83 16 12 C 0.14 2.31 2.21 -67.93 -0.15 2.16 16 13 H 0.09 1.66 7.58 -51.93 -0.39 1.27 16 14 C -0.15 -2.62 9.33 37.16 0.35 -2.27 16 15 C 0.17 3.13 2.52 -67.93 -0.17 2.96 16 16 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 17 C -0.16 -2.84 9.33 37.16 0.35 -2.50 16 18 N -0.72 -17.16 4.43 -53.43 -0.24 -17.40 16 19 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 20 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16 23 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 C 0.07 0.68 11.52 29.95 0.35 1.03 16 28 O -0.17 -2.01 10.53 5.28 0.06 -1.95 16 29 C 0.02 0.23 7.33 -38.45 -0.28 -0.06 16 30 H 0.06 0.22 7.66 -51.93 -0.40 -0.17 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 33 H 0.14 0.77 6.26 -52.49 -0.33 0.44 16 34 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 35 H 0.14 1.81 7.53 -52.49 -0.40 1.41 16 36 H 0.39 4.00 7.31 -40.82 -0.30 3.70 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 1.59 7.44 -51.93 -0.39 1.21 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.03 0.49 7.44 -51.93 -0.39 0.10 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.39 9.98 7.58 -40.82 -0.31 9.67 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.22 1.08 7.41 -52.49 -0.39 0.69 16 LS Contribution 380.02 15.07 5.73 5.73 Total: -1.00 -34.11 380.02 -6.93 -41.04 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -6.18 Total: 9.69 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -1.63 Total: -4.23 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.25 Total: -54.09 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.07 Total: -15.10 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.11 -6.93 -41.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485146699.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.277 kcal (2) G-P(sol) polarization free energy of solvation -34.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds