Wall clock time and date at job start Tue Mar 31 2020 18:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35955 * 117.00139 * 2 1 4 4 C 1.38327 * 120.05886 * 359.97438 * 3 2 1 5 5 C 1.38615 * 120.58351 * 180.02562 * 4 3 2 6 6 C 1.37865 * 120.25188 * 359.97438 * 5 4 3 7 7 C 1.39189 * 119.73296 * 0.04152 * 6 5 4 8 8 C 1.47652 * 134.22612 * 179.97438 * 7 6 5 9 9 C 1.47080 * 127.13749 * 359.97438 * 8 7 6 10 10 O 1.21653 * 119.99945 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99866 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99685 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.47741 * 34.99707 * 12 11 9 14 14 C 1.53002 * 109.47180 * 274.99474 * 12 11 9 15 15 C 1.53004 * 109.47229 * 154.99805 * 12 11 9 16 16 H 1.08995 * 109.47216 * 59.99734 * 15 12 11 17 17 C 1.52999 * 109.47083 * 299.99730 * 15 12 11 18 18 N 1.46498 * 109.47065 * 179.97438 * 15 12 11 19 19 C 1.36943 * 119.99752 * 204.72207 * 18 15 12 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 15 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 15 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47213 * 60.00246 * 23 21 19 25 25 H 1.48502 * 109.47317 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47081 * 299.99875 * 23 21 19 27 27 C 1.36073 * 105.72697 * 180.23657 * 8 7 6 28 28 O 1.33773 * 109.82774 * 359.60084 * 27 8 7 29 29 C 1.34957 * 111.33613 * 0.42299 * 28 27 8 30 30 H 1.08997 * 109.46907 * 59.99738 * 1 2 3 31 31 H 1.08994 * 109.47112 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46627 * 300.00239 * 1 2 3 33 33 H 1.07994 * 119.71305 * 0.04078 * 4 3 2 34 34 H 1.08003 * 119.87039 * 179.97438 * 5 4 3 35 35 H 1.08001 * 120.12935 * 180.02562 * 6 5 4 36 36 H 0.97000 * 120.00523 * 359.97438 * 11 9 8 37 37 H 1.08994 * 109.46974 * 300.00703 * 14 12 11 38 38 H 1.09003 * 109.46657 * 59.99844 * 14 12 11 39 39 H 1.08994 * 109.47387 * 180.02562 * 14 12 11 40 40 H 1.08995 * 109.47098 * 300.00077 * 17 15 12 41 41 H 1.09003 * 109.47054 * 59.99725 * 17 15 12 42 42 H 1.08996 * 109.47245 * 179.97438 * 17 15 12 43 43 H 0.97001 * 120.00384 * 25.00562 * 18 15 12 44 44 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 45 45 H 1.08001 * 125.08556 * 179.72065 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2941 2.3723 -0.0005 5 6 1.9121 3.6130 -0.0011 6 6 3.2878 3.7038 -0.0006 7 6 4.0562 2.5432 -0.0004 8 6 5.5069 2.2686 -0.0003 9 6 6.5974 3.2555 -0.0010 10 8 6.3415 4.4448 -0.0012 11 7 7.8803 2.8423 -0.0014 12 6 8.9665 3.8253 -0.0015 13 1 8.6712 4.6932 0.5881 14 6 9.2600 4.2609 -1.4385 15 6 10.2220 3.1982 0.6078 16 1 10.5174 2.3303 0.0183 17 6 9.9286 2.7626 2.0448 18 7 11.3084 4.1810 0.6071 19 6 12.6118 3.7609 0.6124 20 1 12.8388 2.7050 0.6126 21 6 13.6411 4.6922 0.6176 22 7 13.3643 5.9790 0.6179 23 14 15.4190 4.1192 0.6241 24 1 15.6803 3.3024 -0.5883 25 1 16.3196 5.2999 0.6297 26 1 15.6705 3.2998 1.8368 27 6 5.6257 0.9131 -0.0055 28 8 4.4118 0.3512 0.0002 29 6 3.4381 1.2857 0.0000 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 0.2159 2.3115 -0.0003 34 1 1.3136 4.5121 -0.0019 35 1 3.7672 4.6716 -0.0006 36 1 8.0844 1.8940 -0.0008 37 1 9.5552 3.3930 -2.0281 38 1 8.3655 4.7076 -1.8726 39 1 10.0684 4.9919 -1.4387 40 1 9.6333 3.6305 2.6344 41 1 9.1204 2.0312 2.0450 42 1 10.8229 2.3154 2.4788 43 1 11.1045 5.1294 0.6070 44 1 14.0836 6.6298 0.6211 45 1 6.5603 0.3719 -0.0112 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485146699.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:10 Heat of formation + Delta-G solvation = -53.166336 kcal Electronic energy + Delta-G solvation = -27781.288694 eV Core-core repulsion = 23765.266884 eV Total energy + Delta-G solvation = -4016.021810 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.69447 -40.80167 -40.48398 -38.27770 -37.87555 -35.60379 -34.05089 -33.21231 -31.44040 -31.11982 -30.13906 -29.90923 -28.13940 -25.89809 -25.44157 -24.22948 -23.54928 -23.12859 -21.57419 -21.13306 -19.57780 -19.21282 -18.82788 -17.76478 -17.59803 -17.17220 -16.86744 -16.51929 -16.42594 -16.21550 -15.92860 -15.82996 -15.33477 -15.27206 -14.78920 -14.66546 -14.28463 -14.07802 -13.98394 -13.46233 -13.35426 -13.26136 -13.14883 -12.90942 -12.69239 -12.57417 -12.49712 -12.25958 -12.25549 -12.20280 -12.18328 -11.71807 -11.45571 -11.12154 -10.94783 -10.89591 -10.14002 -9.74312 -8.99572 -8.93967 -7.89636 -5.18600 -0.26781 0.16500 0.67070 1.50411 1.52963 1.54693 1.58763 1.96329 2.18637 2.26659 2.61358 2.65055 3.35362 3.44199 3.45660 3.79412 3.82808 3.98869 4.02442 4.10920 4.18323 4.23331 4.29199 4.37817 4.40467 4.43174 4.48978 4.61608 4.77258 4.79738 4.89879 4.90086 4.98370 5.04522 5.07362 5.18424 5.25206 5.33279 5.42762 5.49520 5.51779 5.54141 5.60289 5.70639 6.30841 6.32222 6.55952 7.22053 7.37295 8.11075 8.34011 9.33597 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.032812 B = 0.002125 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.147411 B =13171.312065 C =13690.103809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.333 6.333 3 C 0.140 3.860 4 C -0.185 4.185 5 C -0.079 4.079 6 C -0.129 4.129 7 C -0.073 4.073 8 C -0.265 4.265 9 C 0.590 3.410 10 O -0.579 6.579 11 N -0.697 5.697 12 C 0.153 3.847 13 H 0.059 0.941 14 C -0.144 4.144 15 C 0.168 3.832 16 H 0.067 0.933 17 C -0.156 4.156 18 N -0.731 5.731 19 C -0.231 4.231 20 H 0.082 0.918 21 C -0.079 4.079 22 N -0.970 5.970 23 Si 0.972 3.028 24 H -0.277 1.277 25 H -0.302 1.302 26 H -0.279 1.279 27 C 0.109 3.891 28 O -0.178 6.178 29 C -0.008 4.008 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.072 0.928 33 H 0.177 0.823 34 H 0.164 0.836 35 H 0.122 0.878 36 H 0.414 0.586 37 H 0.067 0.933 38 H 0.045 0.955 39 H 0.052 0.948 40 H 0.029 0.971 41 H 0.075 0.925 42 H 0.044 0.956 43 H 0.371 0.629 44 H 0.249 0.751 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.476 -15.101 -2.202 32.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.247 6.247 3 C 0.095 3.905 4 C -0.203 4.203 5 C -0.097 4.097 6 C -0.148 4.148 7 C -0.074 4.074 8 C -0.270 4.270 9 C 0.379 3.621 10 O -0.460 6.460 11 N -0.349 5.349 12 C 0.047 3.953 13 H 0.077 0.923 14 C -0.202 4.202 15 C 0.059 3.941 16 H 0.085 0.915 17 C -0.216 4.216 18 N -0.371 5.371 19 C -0.363 4.363 20 H 0.100 0.900 21 C -0.271 4.271 22 N -0.621 5.621 23 Si 0.801 3.199 24 H -0.203 1.203 25 H -0.228 1.228 26 H -0.205 1.205 27 C 0.040 3.960 28 O -0.077 6.077 29 C -0.055 4.055 30 H 0.091 0.909 31 H 0.138 0.862 32 H 0.090 0.910 33 H 0.194 0.806 34 H 0.181 0.819 35 H 0.140 0.860 36 H 0.252 0.748 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.094 0.906 42 H 0.063 0.937 43 H 0.203 0.797 44 H 0.057 0.943 45 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -28.499 -14.873 -2.211 32.222 hybrid contribution 1.299 0.603 0.127 1.438 sum -27.200 -14.270 -2.084 30.786 Atomic orbital electron populations 1.23466 0.75487 1.06009 1.02928 1.86124 1.24243 1.25769 1.88612 1.17920 0.86278 0.86633 0.99713 1.21358 1.01549 0.89951 1.07475 1.21237 0.93107 0.98676 0.96698 1.20715 0.94234 0.97105 1.02729 1.19473 0.91688 0.93606 1.02672 1.20861 0.92359 0.94382 1.19379 1.17286 0.82204 0.87208 0.75418 1.90767 1.84339 1.18781 1.52117 1.45583 1.04015 1.10785 1.74527 1.20914 0.86139 0.91485 0.96717 0.92285 1.21936 1.00534 1.01832 0.95907 1.20575 0.86257 0.92434 0.94806 0.91537 1.22320 1.00824 1.00353 0.98084 1.42477 1.01349 1.04605 1.88664 1.19560 0.83692 0.92555 1.40511 0.90003 1.25550 1.01908 0.95448 1.04162 1.69828 1.31972 1.00596 1.59733 0.85237 0.80174 0.76320 0.78159 1.20268 1.22832 1.20510 1.25398 0.88082 0.91315 0.91193 1.83902 1.13906 1.35365 1.74483 1.18866 0.88485 0.86425 1.11691 0.90928 0.86248 0.90964 0.80626 0.81875 0.85979 0.74834 0.91423 0.93568 0.92878 0.95146 0.90594 0.93686 0.79695 0.94261 0.71667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.22 16 2 O -0.33 -5.89 10.50 -93.05 -0.98 -6.86 16 3 C 0.14 2.80 6.70 22.57 0.15 2.95 16 4 C -0.18 -2.76 9.02 22.38 0.20 -2.56 16 5 C -0.08 -1.37 10.03 22.27 0.22 -1.14 16 6 C -0.13 -3.22 9.88 22.41 0.22 -3.00 16 7 C -0.07 -1.94 6.29 -20.11 -0.13 -2.06 16 8 C -0.27 -6.58 6.31 -18.97 -0.12 -6.70 16 9 C 0.59 17.67 7.77 86.56 0.67 18.34 16 10 O -0.58 -22.58 15.94 -4.20 -0.07 -22.64 16 11 N -0.70 -17.78 4.37 -446.12 -1.95 -19.73 16 12 C 0.15 5.13 2.21 44.99 0.10 5.23 16 13 H 0.06 2.35 7.58 -2.39 -0.02 2.33 16 14 C -0.14 -4.98 9.33 71.98 0.67 -4.30 16 15 C 0.17 6.07 2.52 44.99 0.11 6.18 16 16 H 0.07 2.23 8.08 -2.39 -0.02 2.21 16 17 C -0.16 -5.13 9.33 71.98 0.67 -4.46 16 18 N -0.73 -35.25 4.43 -322.94 -1.43 -36.68 16 19 C -0.23 -12.26 9.93 84.03 0.83 -11.43 16 20 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 21 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 22 N -0.97 -59.18 13.06 21.65 0.28 -58.90 16 23 Si 0.97 45.42 29.55 68.60 2.03 47.45 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 25 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 27 C 0.11 1.82 11.52 67.32 0.78 2.60 16 28 O -0.18 -3.80 10.53 -4.02 -0.04 -3.85 16 29 C -0.01 -0.20 7.33 23.00 0.17 -0.03 16 30 H 0.07 0.31 7.66 -2.39 -0.02 0.29 16 31 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.07 0.32 7.66 -2.39 -0.02 0.30 16 33 H 0.18 1.24 6.26 -2.91 -0.02 1.22 16 34 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 35 H 0.12 3.42 7.53 -2.91 -0.02 3.39 16 36 H 0.41 7.02 7.31 -92.71 -0.68 6.34 16 37 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.05 2.14 7.44 -2.39 -0.02 2.13 16 40 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 1.86 7.44 -2.39 -0.02 1.84 16 42 H 0.04 1.57 8.14 -2.39 -0.02 1.56 16 43 H 0.37 19.93 7.58 -92.71 -0.70 19.23 16 44 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 45 H 0.27 1.35 7.41 -2.91 -0.02 1.33 16 Total: -1.00 -78.10 380.02 3.63 -74.46 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: -0.35 Total: 29.88 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: 6.14 Total: -3.13 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -3.10 Total: -115.31 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -1.09 Total: -33.35 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -78.10 3.63 -74.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485146699.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.298 kcal (2) G-P(sol) polarization free energy of solvation -78.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds