Wall clock time and date at job start Tue Mar 31 2020 16:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.81138 * 2 1 4 4 C 1.54708 * 110.75598 * 236.66859 * 2 1 3 5 5 C 1.51677 * 101.89255 * 216.44159 * 4 2 1 6 6 C 1.37697 * 132.12526 * 195.88081 * 5 4 2 7 7 C 1.38601 * 120.32072 * 179.02119 * 6 5 4 8 8 C 1.37820 * 119.97360 * 359.97438 * 7 6 5 9 9 C 1.39488 * 120.18960 * 0.19243 * 8 7 6 10 10 C 1.47536 * 120.05475 * 180.02562 * 9 8 7 11 11 O 1.21586 * 119.99748 * 179.97438 * 10 9 8 12 12 N 1.34769 * 120.00029 * 359.97438 * 10 9 8 13 13 C 1.46504 * 120.00206 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47200 * 180.02562 * 13 12 10 15 15 O 1.42900 * 112.94812 * 53.40793 * 14 13 12 16 16 C 1.53945 * 113.74087 * 281.67012 * 14 13 12 17 17 N 1.47578 * 86.12029 * 222.04800 * 16 14 13 18 18 C 1.36932 * 134.49588 * 204.63570 * 17 16 14 19 19 H 1.07996 * 120.00357 * 173.48199 * 18 17 16 20 20 C 1.38812 * 119.99740 * 353.49041 * 18 17 16 21 21 N 1.31625 * 120.00239 * 5.05917 * 20 18 17 22 22 Si 1.86800 * 119.99947 * 185.06225 * 20 18 17 23 23 H 1.48504 * 109.47215 * 94.98753 * 22 20 18 24 24 H 1.48501 * 109.47483 * 214.98651 * 22 20 18 25 25 H 1.48497 * 109.47315 * 334.98635 * 22 20 18 26 26 C 1.47582 * 91.01059 * 24.64185 * 17 16 14 27 27 C 1.38833 * 106.99796 * 15.35260 * 5 4 2 28 28 O 1.35860 * 111.32002 * 1.09918 * 27 5 4 29 29 H 1.09000 * 109.47421 * 298.12800 * 1 2 3 30 30 H 1.08998 * 109.47385 * 58.12881 * 1 2 3 31 31 H 1.09003 * 109.46857 * 178.12721 * 1 2 3 32 32 H 1.08995 * 110.94798 * 98.28885 * 4 2 1 33 33 H 1.09005 * 110.97406 * 334.59977 * 4 2 1 34 34 H 1.08007 * 119.83781 * 359.00365 * 6 5 4 35 35 H 1.08007 * 120.01320 * 179.97438 * 7 6 5 36 36 H 1.07996 * 119.90786 * 180.20926 * 8 7 6 37 37 H 0.96999 * 120.00173 * 0.02562 * 12 10 9 38 38 H 1.09005 * 109.46519 * 300.00184 * 13 12 10 39 39 H 1.08995 * 109.46933 * 60.00158 * 13 12 10 40 40 H 0.96707 * 113.99729 * 309.66435 * 15 14 13 41 41 H 1.09003 * 113.77214 * 336.35372 * 16 14 13 42 42 H 1.08998 * 113.77029 * 107.74592 * 16 14 13 43 43 H 0.97000 * 119.99922 * 180.02562 * 21 20 18 44 44 H 1.08998 * 113.76487 * 221.05612 * 26 17 16 45 45 H 1.08999 * 113.87167 * 89.67240 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 6 2.0782 -0.7949 -1.2087 5 6 3.3055 -1.4596 -0.6149 6 6 4.3964 -2.0694 -1.1930 7 6 5.4086 -2.5891 -0.4015 8 6 5.3258 -2.4962 0.9711 9 6 4.2236 -1.8837 1.5674 10 6 4.1383 -1.7853 3.0370 11 8 3.1773 -1.2508 3.5558 12 7 5.1255 -2.2880 3.8045 13 6 5.0411 -2.1898 5.2638 14 6 6.2802 -2.8321 5.8906 15 8 7.5033 -2.3077 5.3701 16 6 6.2290 -4.3702 5.9287 17 7 6.7858 -4.2551 7.2905 18 6 7.5181 -5.0810 8.1009 19 1 7.8999 -4.7143 9.0422 20 6 7.7698 -6.3897 7.7124 21 7 7.3912 -6.8076 6.5230 22 14 8.6457 -7.5578 8.8776 23 1 7.6414 -8.3495 9.6326 24 1 9.5148 -8.4755 8.0980 25 1 9.4773 -6.7773 9.8286 26 6 6.2364 -2.8924 7.4283 27 6 3.1932 -1.3603 0.7653 28 8 2.0394 -0.7386 1.1235 29 1 -0.3634 0.4845 0.9063 30 1 -0.3634 0.5426 -0.8727 31 1 -0.3633 -1.0272 -0.0336 32 1 2.3536 -0.1250 -2.0232 33 1 1.3568 -1.5392 -1.5459 34 1 4.4636 -2.1432 -2.2685 35 1 6.2618 -3.0667 -0.8602 36 1 6.1167 -2.8985 1.5867 37 1 5.8924 -2.7140 3.3906 38 1 4.9894 -1.1407 5.5549 39 1 4.1475 -2.7080 5.6117 40 1 7.5465 -2.2955 4.4041 41 1 5.2181 -4.7770 5.9003 42 1 6.9019 -4.8500 5.2180 43 1 7.5668 -7.7222 6.2517 44 1 6.9153 -2.1921 7.9149 45 1 5.2278 -2.8630 7.8405 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500882428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:49 Heat of formation + Delta-G solvation = -23.712076 kcal Electronic energy + Delta-G solvation = -28211.542690 eV Core-core repulsion = 24196.798112 eV Total energy + Delta-G solvation = -4014.744577 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.54370 -39.73524 -38.56019 -37.50372 -34.87561 -33.97600 -33.45042 -32.01537 -31.48329 -30.60406 -28.43806 -26.93395 -26.07040 -24.98962 -23.60093 -22.33554 -22.03122 -21.73125 -20.33471 -19.33107 -18.16821 -17.71653 -16.93771 -16.72039 -15.98460 -15.97507 -15.40574 -15.28728 -15.00145 -14.66867 -14.29006 -13.97709 -13.83785 -13.65592 -13.54832 -13.36431 -13.12708 -13.03361 -12.68132 -12.59555 -12.37567 -12.23879 -12.05996 -11.77971 -11.72301 -11.35575 -11.07054 -11.05184 -10.94390 -10.73658 -10.40765 -9.98566 -9.69347 -9.48877 -9.25742 -9.16989 -8.85809 -8.80563 -8.40431 -6.87862 -5.77999 -3.08633 0.63775 1.04270 2.79746 2.94745 3.19247 3.40440 3.45477 3.47424 3.64607 4.02676 4.13233 4.43493 4.45104 4.53890 4.58314 4.69745 4.79495 4.84009 4.95895 5.01131 5.11910 5.16058 5.23030 5.26385 5.31296 5.41647 5.45890 5.59329 5.66590 5.73405 5.79879 5.89288 5.97756 6.09289 6.11834 6.30141 6.32896 6.45770 6.56613 6.59637 6.91165 7.04291 7.14605 7.51700 7.54882 7.96311 8.12544 8.32305 9.04215 9.70333 10.57682 11.39948 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021616 B = 0.002450 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.010871 B =11428.010799 C =12003.430875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.070 3.930 3 H 0.088 0.912 4 C -0.104 4.104 5 C -0.191 4.191 6 C -0.046 4.046 7 C -0.155 4.155 8 C -0.051 4.051 9 C -0.155 4.155 10 C 0.557 3.443 11 O -0.526 6.526 12 N -0.722 5.722 13 C 0.105 3.895 14 C 0.062 3.938 15 O -0.526 6.526 16 C 0.147 3.853 17 N -0.602 5.602 18 C -0.218 4.218 19 H 0.081 0.919 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.136 3.864 27 C 0.171 3.829 28 O -0.273 6.273 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.128 0.872 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.396 0.604 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.361 0.639 41 H 0.036 0.964 42 H 0.073 0.927 43 H 0.253 0.747 44 H 0.055 0.945 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.330 13.157 -20.640 26.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.014 3.986 3 H 0.106 0.894 4 C -0.141 4.141 5 C -0.191 4.191 6 C -0.064 4.064 7 C -0.174 4.174 8 C -0.070 4.070 9 C -0.159 4.159 10 C 0.344 3.656 11 O -0.403 6.403 12 N -0.375 5.375 13 C -0.020 4.020 14 C 0.020 3.980 15 O -0.329 6.329 16 C 0.021 3.979 17 N -0.328 5.328 18 C -0.346 4.346 19 H 0.099 0.901 20 C -0.205 4.205 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.205 1.205 26 C 0.009 3.991 27 C 0.122 3.878 28 O -0.185 6.185 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.146 0.854 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.231 0.769 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.207 0.793 41 H 0.054 0.946 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.850 13.318 -19.261 25.405 hybrid contribution 0.659 -1.104 -0.350 1.332 sum -9.191 12.215 -19.612 24.866 Atomic orbital electron populations 1.21870 0.91860 1.03566 1.03311 1.23498 0.96166 0.95634 0.83330 0.89376 1.21893 0.94500 0.99265 0.98454 1.20799 0.98455 1.06466 0.93429 1.20477 0.91461 0.94329 1.00156 1.20982 1.00109 1.03080 0.93193 1.21151 0.95496 0.94818 0.95484 1.19295 0.95087 1.08609 0.92946 1.18020 0.82699 0.78690 0.86143 1.90819 1.31720 1.43273 1.74523 1.45829 1.23670 1.60524 1.07478 1.22046 0.99733 1.01742 0.78466 1.23786 0.81984 0.96017 0.96250 1.86621 1.36801 1.85506 1.24009 1.22837 0.97109 0.88878 0.89029 1.45652 1.59489 1.13132 1.14541 1.19004 1.24403 0.91160 1.00025 0.90079 1.24806 1.01445 0.96878 0.97334 1.69822 1.51833 1.16768 1.18409 0.86095 0.78800 0.80940 0.79936 1.21641 1.21723 1.20526 1.22555 0.97312 0.89201 0.90005 1.19428 0.85669 0.90845 0.91817 1.87046 1.33412 1.61140 1.36932 0.90968 0.90313 0.91369 0.88952 0.88911 0.85368 0.84615 0.84501 0.76850 0.91068 0.90191 0.79345 0.94600 0.90834 0.93692 0.92681 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.60 37.16 0.36 -0.64 16 2 C 0.07 0.61 4.26 -25.83 -0.11 0.50 16 3 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.10 -0.75 6.65 -26.50 -0.18 -0.93 16 5 C -0.19 -1.89 6.27 -104.12 -0.65 -2.54 16 6 C -0.05 -0.38 10.02 -39.65 -0.40 -0.78 16 7 C -0.16 -1.30 10.05 -39.60 -0.40 -1.70 16 8 C -0.05 -0.51 9.51 -39.27 -0.37 -0.89 16 9 C -0.16 -2.06 5.89 -104.72 -0.62 -2.68 16 10 C 0.56 8.81 7.76 -12.47 -0.10 8.71 16 11 O -0.53 -10.25 15.87 -10.28 -0.16 -10.42 16 12 N -0.72 -10.21 5.29 -61.35 -0.32 -10.54 16 13 C 0.10 1.68 5.28 -4.04 -0.02 1.66 16 14 C 0.06 1.16 1.52 -89.70 -0.14 1.03 16 15 O -0.53 -9.59 13.51 -35.23 -0.48 -10.07 16 16 C 0.15 3.40 6.83 -2.98 -0.02 3.38 16 17 N -0.60 -15.71 3.70 -177.79 -0.66 -16.37 16 18 C -0.22 -6.25 10.70 -15.06 -0.16 -6.41 16 19 H 0.08 2.25 7.83 -52.49 -0.41 1.83 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 21 N -0.92 -27.33 11.51 55.49 0.64 -26.69 16 22 Si 0.91 22.38 29.56 -169.99 -5.02 17.36 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.14 2.86 8.34 -2.98 -0.02 2.83 16 27 C 0.17 2.24 6.73 -38.44 -0.26 1.98 16 28 O -0.27 -3.78 9.83 -34.88 -0.34 -4.12 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.48 8.11 -51.93 -0.42 0.06 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.58 7.90 -51.93 -0.41 0.17 16 34 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 35 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 36 H 0.14 1.10 6.37 -52.49 -0.33 0.76 16 37 H 0.40 4.64 5.32 -40.82 -0.22 4.42 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 40 H 0.36 4.88 7.61 45.56 0.35 5.22 16 41 H 0.04 0.85 8.03 -51.93 -0.42 0.44 16 42 H 0.07 1.85 7.35 -51.93 -0.38 1.47 16 43 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.05 0.97 8.10 -51.93 -0.42 0.55 16 LS Contribution 373.42 15.07 5.63 5.63 Total: -1.00 -37.05 373.42 -9.51 -46.55 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.60 Total: 5.46 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -3.18 Total: 3.20 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.34 Total: -53.59 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.98 Total: -24.61 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.05 -9.51 -46.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500882428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.842 kcal (2) G-P(sol) polarization free energy of solvation -37.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds