Wall clock time and date at job start Tue Mar 31 2020 16:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.81138 * 2 1 4 4 C 1.54708 * 110.75598 * 236.66859 * 2 1 3 5 5 C 1.51677 * 101.89255 * 216.44159 * 4 2 1 6 6 C 1.37697 * 132.12526 * 195.88081 * 5 4 2 7 7 C 1.38601 * 120.32072 * 179.02119 * 6 5 4 8 8 C 1.37820 * 119.97360 * 359.97438 * 7 6 5 9 9 C 1.39488 * 120.18960 * 0.19243 * 8 7 6 10 10 C 1.47536 * 120.05475 * 180.02562 * 9 8 7 11 11 O 1.21586 * 119.99748 * 179.97438 * 10 9 8 12 12 N 1.34769 * 120.00029 * 359.97438 * 10 9 8 13 13 C 1.46504 * 120.00206 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.47200 * 180.02562 * 13 12 10 15 15 O 1.42900 * 112.94812 * 53.40793 * 14 13 12 16 16 C 1.53945 * 113.74087 * 281.67012 * 14 13 12 17 17 N 1.47578 * 86.12029 * 222.04800 * 16 14 13 18 18 C 1.36932 * 134.49588 * 204.63570 * 17 16 14 19 19 H 1.07996 * 120.00357 * 173.48199 * 18 17 16 20 20 C 1.38812 * 119.99740 * 353.49041 * 18 17 16 21 21 N 1.31625 * 120.00239 * 5.05917 * 20 18 17 22 22 Si 1.86800 * 119.99947 * 185.06225 * 20 18 17 23 23 H 1.48504 * 109.47215 * 94.98753 * 22 20 18 24 24 H 1.48501 * 109.47483 * 214.98651 * 22 20 18 25 25 H 1.48497 * 109.47315 * 334.98635 * 22 20 18 26 26 C 1.47582 * 91.01059 * 24.64185 * 17 16 14 27 27 C 1.38833 * 106.99796 * 15.35260 * 5 4 2 28 28 O 1.35860 * 111.32002 * 1.09918 * 27 5 4 29 29 H 1.09000 * 109.47421 * 298.12800 * 1 2 3 30 30 H 1.08998 * 109.47385 * 58.12881 * 1 2 3 31 31 H 1.09003 * 109.46857 * 178.12721 * 1 2 3 32 32 H 1.08995 * 110.94798 * 98.28885 * 4 2 1 33 33 H 1.09005 * 110.97406 * 334.59977 * 4 2 1 34 34 H 1.08007 * 119.83781 * 359.00365 * 6 5 4 35 35 H 1.08007 * 120.01320 * 179.97438 * 7 6 5 36 36 H 1.07996 * 119.90786 * 180.20926 * 8 7 6 37 37 H 0.96999 * 120.00173 * 0.02562 * 12 10 9 38 38 H 1.09005 * 109.46519 * 300.00184 * 13 12 10 39 39 H 1.08995 * 109.46933 * 60.00158 * 13 12 10 40 40 H 0.96707 * 113.99729 * 309.66435 * 15 14 13 41 41 H 1.09003 * 113.77214 * 336.35372 * 16 14 13 42 42 H 1.08998 * 113.77029 * 107.74592 * 16 14 13 43 43 H 0.97000 * 119.99922 * 180.02562 * 21 20 18 44 44 H 1.08998 * 113.76487 * 221.05612 * 26 17 16 45 45 H 1.08999 * 113.87167 * 89.67240 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0189 0.0000 4 6 2.0782 -0.7949 -1.2087 5 6 3.3055 -1.4596 -0.6149 6 6 4.3964 -2.0694 -1.1930 7 6 5.4086 -2.5891 -0.4015 8 6 5.3258 -2.4962 0.9711 9 6 4.2236 -1.8837 1.5674 10 6 4.1383 -1.7853 3.0370 11 8 3.1773 -1.2508 3.5558 12 7 5.1255 -2.2880 3.8045 13 6 5.0411 -2.1898 5.2638 14 6 6.2802 -2.8321 5.8906 15 8 7.5033 -2.3077 5.3701 16 6 6.2290 -4.3702 5.9287 17 7 6.7858 -4.2551 7.2905 18 6 7.5181 -5.0810 8.1009 19 1 7.8999 -4.7143 9.0422 20 6 7.7698 -6.3897 7.7124 21 7 7.3912 -6.8076 6.5230 22 14 8.6457 -7.5578 8.8776 23 1 7.6414 -8.3495 9.6326 24 1 9.5148 -8.4755 8.0980 25 1 9.4773 -6.7773 9.8286 26 6 6.2364 -2.8924 7.4283 27 6 3.1932 -1.3603 0.7653 28 8 2.0394 -0.7386 1.1235 29 1 -0.3634 0.4845 0.9063 30 1 -0.3634 0.5426 -0.8727 31 1 -0.3633 -1.0272 -0.0336 32 1 2.3536 -0.1250 -2.0232 33 1 1.3568 -1.5392 -1.5459 34 1 4.4636 -2.1432 -2.2685 35 1 6.2618 -3.0667 -0.8602 36 1 6.1167 -2.8985 1.5867 37 1 5.8924 -2.7140 3.3906 38 1 4.9894 -1.1407 5.5549 39 1 4.1475 -2.7080 5.6117 40 1 7.5465 -2.2955 4.4041 41 1 5.2181 -4.7770 5.9003 42 1 6.9019 -4.8500 5.2180 43 1 7.5668 -7.7222 6.2517 44 1 6.9153 -2.1921 7.9149 45 1 5.2278 -2.8630 7.8405 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500882428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:47 Heat of formation + Delta-G solvation = -50.952501 kcal Electronic energy + Delta-G solvation = -28212.723923 eV Core-core repulsion = 24196.798112 eV Total energy + Delta-G solvation = -4015.925811 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.32986 -41.09219 -40.01346 -38.33397 -36.52372 -35.33064 -34.18330 -34.00879 -32.25130 -31.42600 -30.09467 -27.81276 -27.49750 -26.77077 -24.76677 -23.50018 -23.05631 -22.60933 -21.46834 -20.97287 -19.29990 -18.69073 -18.46639 -17.79368 -17.36674 -17.05737 -16.77752 -16.47144 -16.19416 -15.87641 -15.71527 -15.51164 -15.04929 -14.86172 -14.61384 -14.44575 -14.17014 -14.05167 -13.87842 -13.69685 -13.48718 -13.27127 -13.01593 -12.97174 -12.86417 -12.76834 -12.57811 -12.43367 -12.21413 -11.98281 -11.79069 -11.71968 -11.45537 -10.97156 -10.94685 -10.75052 -10.27987 -9.90224 -9.17988 -8.94220 -7.93478 -5.25568 -0.18790 0.29854 1.45013 1.47049 1.55929 1.81070 2.01337 2.22915 2.45714 2.76779 3.02996 3.24592 3.32969 3.40407 3.48366 3.57164 3.71260 3.85900 3.92406 4.01814 4.18560 4.21713 4.28816 4.33769 4.44542 4.66336 4.67414 4.70802 4.74710 4.76964 4.80164 4.92314 4.93193 5.05340 5.15707 5.16287 5.20307 5.25063 5.28916 5.31714 5.40194 5.47764 5.67023 5.89829 6.15439 6.40802 6.79692 6.90042 7.13746 7.57424 8.51688 9.23972 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021616 B = 0.002450 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.010871 B =11428.010799 C =12003.430875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.057 3.943 3 H 0.093 0.907 4 C -0.095 4.095 5 C -0.194 4.194 6 C -0.037 4.037 7 C -0.150 4.150 8 C -0.055 4.055 9 C -0.187 4.187 10 C 0.555 3.445 11 O -0.573 6.573 12 N -0.712 5.712 13 C 0.119 3.881 14 C 0.099 3.901 15 O -0.537 6.537 16 C 0.148 3.852 17 N -0.635 5.635 18 C -0.235 4.235 19 H 0.082 0.918 20 C -0.066 4.066 21 N -0.950 5.950 22 Si 0.979 3.021 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.268 1.268 26 C 0.129 3.871 27 C 0.138 3.862 28 O -0.314 6.314 29 H 0.058 0.942 30 H 0.110 0.890 31 H 0.061 0.939 32 H 0.122 0.878 33 H 0.103 0.897 34 H 0.165 0.835 35 H 0.168 0.832 36 H 0.152 0.848 37 H 0.408 0.592 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.383 0.617 41 H 0.024 0.976 42 H 0.049 0.951 43 H 0.249 0.751 44 H 0.060 0.940 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.669 13.650 -22.978 28.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.002 3.998 3 H 0.111 0.889 4 C -0.131 4.131 5 C -0.195 4.195 6 C -0.055 4.055 7 C -0.168 4.168 8 C -0.074 4.074 9 C -0.190 4.190 10 C 0.345 3.655 11 O -0.454 6.454 12 N -0.366 5.366 13 C -0.006 4.006 14 C 0.056 3.944 15 O -0.344 6.344 16 C 0.022 3.978 17 N -0.361 5.361 18 C -0.363 4.363 19 H 0.100 0.900 20 C -0.259 4.259 21 N -0.599 5.599 22 Si 0.807 3.193 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.193 1.193 26 C 0.004 3.996 27 C 0.090 3.910 28 O -0.227 6.227 29 H 0.077 0.923 30 H 0.128 0.872 31 H 0.080 0.920 32 H 0.140 0.860 33 H 0.122 0.878 34 H 0.183 0.817 35 H 0.185 0.815 36 H 0.170 0.830 37 H 0.246 0.754 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.232 0.768 41 H 0.042 0.958 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.078 0.922 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.170 13.836 -21.624 27.261 hybrid contribution 0.455 -1.201 0.303 1.320 sum -8.715 12.635 -21.321 26.272 Atomic orbital electron populations 1.21896 0.90669 1.03511 1.04108 1.23838 0.97199 0.95769 0.83030 0.88906 1.21946 0.93421 0.99572 0.98194 1.21198 0.99760 1.06344 0.92160 1.20961 0.90197 0.92297 1.02042 1.21415 1.00982 1.02048 0.92348 1.21392 0.94801 0.94369 0.96802 1.19318 0.97124 1.11359 0.91238 1.18515 0.81907 0.77610 0.87493 1.90781 1.33482 1.45509 1.75583 1.45679 1.24008 1.60322 1.06550 1.21739 0.97696 1.01591 0.79574 1.23143 0.83156 0.92920 0.95171 1.86571 1.36555 1.84985 1.26259 1.22764 0.95539 0.91953 0.87565 1.46026 1.59859 1.14670 1.15561 1.19375 1.24596 0.91991 1.00373 0.89998 1.25646 1.02861 0.98433 0.98940 1.69991 1.53259 1.16717 1.19899 0.85046 0.77643 0.78593 0.77973 1.21477 1.21823 1.19303 1.22784 0.98019 0.86910 0.91899 1.19834 0.85786 0.91848 0.93501 1.86995 1.34101 1.61953 1.39663 0.92293 0.87168 0.91971 0.85978 0.87841 0.81704 0.81478 0.83025 0.75380 0.90298 0.91159 0.76823 0.95782 0.93296 0.94165 0.92210 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.60 71.98 0.69 -1.17 16 2 C 0.06 0.97 4.26 31.18 0.13 1.10 16 3 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 4 C -0.09 -1.14 6.65 30.74 0.20 -0.94 16 5 C -0.19 -3.47 6.27 -19.54 -0.12 -3.59 16 6 C -0.04 -0.48 10.02 22.23 0.22 -0.26 16 7 C -0.15 -2.04 10.05 22.26 0.22 -1.81 16 8 C -0.06 -1.03 9.51 22.47 0.21 -0.82 16 9 C -0.19 -4.99 5.89 -19.93 -0.12 -5.11 16 10 C 0.56 18.08 7.76 86.70 0.67 18.75 16 11 O -0.57 -23.42 15.87 10.90 0.17 -23.25 16 12 N -0.71 -20.19 5.29 -466.28 -2.46 -22.65 16 13 C 0.12 3.82 5.28 86.38 0.46 4.28 16 14 C 0.10 3.66 1.52 -10.14 -0.02 3.65 16 15 O -0.54 -19.03 13.51 -148.98 -2.01 -21.04 16 16 C 0.15 6.95 6.83 86.48 0.59 7.54 16 17 N -0.63 -33.49 3.70 -720.22 -2.66 -36.15 16 18 C -0.24 -13.58 10.70 84.03 0.90 -12.68 16 19 H 0.08 4.56 7.83 -2.91 -0.02 4.53 16 20 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 21 N -0.95 -57.41 11.51 21.65 0.25 -57.17 16 22 Si 0.98 46.39 29.56 68.60 2.03 48.42 16 23 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 26 C 0.13 5.40 8.34 86.48 0.72 6.12 16 27 C 0.14 3.65 6.73 23.01 0.15 3.81 16 28 O -0.31 -9.05 9.83 -77.09 -0.76 -9.81 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.86 8.11 -2.39 -0.02 0.84 16 32 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.10 1.03 7.90 -2.38 -0.02 1.01 16 34 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 35 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 36 H 0.15 2.19 6.37 -2.91 -0.02 2.17 16 37 H 0.41 9.34 5.32 -92.71 -0.49 8.85 16 38 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 39 H 0.07 2.43 8.04 -2.39 -0.02 2.41 16 40 H 0.38 9.76 7.61 -74.05 -0.56 9.20 16 41 H 0.02 1.19 8.03 -2.39 -0.02 1.17 16 42 H 0.05 2.52 7.35 -2.39 -0.02 2.51 16 43 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 44 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.07 2.65 8.10 -2.39 -0.02 2.63 16 Total: -1.00 -83.45 373.42 -0.08 -83.52 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -0.02 Total: 22.58 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 5.39 Total: 15.54 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -4.88 Total: -115.97 kcal Atomic # 8 Polarization: -51.50 SS G_CDS: -2.60 Total: -54.10 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -83.45 -0.08 -83.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500882428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.572 kcal (2) G-P(sol) polarization free energy of solvation -83.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds