Wall clock time and date at job start Tue Mar 31 2020 17:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 O 1.21273 * 120.00521 * 240.00093 * 4 2 1 6 6 N 1.34786 * 119.99672 * 60.00403 * 4 2 1 7 7 C 1.46499 * 119.99820 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.46799 * 180.02562 * 7 6 4 9 9 H 1.08988 * 109.47136 * 65.00031 * 8 7 6 10 10 C 1.53000 * 109.46672 * 185.00231 * 8 7 6 11 11 O 1.42901 * 109.47159 * 55.00341 * 10 8 7 12 12 N 1.46503 * 109.47196 * 304.99703 * 8 7 6 13 13 C 1.36931 * 119.99914 * 155.00017 * 12 8 7 14 14 H 1.08001 * 120.00232 * 0.02562 * 13 12 8 15 15 C 1.38814 * 120.00178 * 180.02562 * 13 12 8 16 16 N 1.31619 * 120.00094 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99985 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47371 * 89.99974 * 17 15 13 19 19 H 1.48498 * 109.47317 * 210.00568 * 17 15 13 20 20 H 1.48508 * 109.46762 * 329.99956 * 17 15 13 21 21 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 22 22 C 1.34000 * 124.92361 * 239.99988 * 21 2 1 23 23 C 1.46779 * 106.18643 * 179.97438 * 22 21 2 24 24 C 1.39401 * 134.37170 * 179.97438 * 23 22 21 25 25 C 1.36740 * 119.71962 * 179.97438 * 24 23 22 26 26 C 1.38743 * 120.41297 * 359.97438 * 25 24 23 27 27 C 1.37845 * 120.68799 * 0.02726 * 26 25 24 28 28 C 1.38935 * 119.81909 * 359.97438 * 27 26 25 29 29 O 1.34452 * 124.92248 * 59.69383 * 21 2 1 30 30 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 33 33 H 0.96999 * 119.99591 * 359.97438 * 6 4 2 34 34 H 1.08992 * 109.47397 * 299.99990 * 7 6 4 35 35 H 1.08996 * 109.46733 * 60.00178 * 7 6 4 36 36 H 1.09006 * 109.46980 * 174.99764 * 10 8 7 37 37 H 1.09001 * 109.47326 * 295.00017 * 10 8 7 38 38 H 0.96701 * 113.99973 * 179.97438 * 11 10 8 39 39 H 0.96999 * 119.99947 * 335.01047 * 12 8 7 40 40 H 0.97000 * 119.99893 * 179.97438 * 16 15 13 41 41 H 1.08005 * 126.90518 * 359.96349 * 22 21 2 42 42 H 1.08002 * 120.14243 * 359.97438 * 24 23 22 43 43 H 1.07997 * 119.79665 * 180.02562 * 25 24 23 44 44 H 1.08007 * 119.65453 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.08934 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 2.1956 -0.9403 -3.6507 8 6 1.6861 -0.2187 -4.9000 9 1 2.1207 0.7797 -4.9454 10 6 2.0913 -1.0087 -6.1460 11 8 1.6196 -2.3528 -6.0322 12 7 0.2260 -0.1136 -4.8418 13 6 -0.4162 0.8854 -5.5233 14 1 0.1536 1.5957 -6.1041 15 6 -1.7996 0.9854 -5.4679 16 7 -2.4169 1.9454 -6.1234 17 14 -2.7852 -0.2427 -4.4629 18 1 -2.9413 0.2645 -3.0760 19 1 -4.1249 -0.4236 -5.0776 20 1 -2.0729 -1.5455 -4.4363 21 6 2.0323 -0.7104 1.2305 22 6 2.8059 -0.1565 2.1740 23 6 3.0464 -1.2044 3.1732 24 6 3.7582 -1.2651 4.3703 25 6 3.7829 -2.4301 5.0859 26 6 3.1041 -3.5502 4.6281 27 6 2.3950 -3.5090 3.4467 28 6 2.3571 -2.3353 2.7043 29 8 1.7644 -1.9902 1.5436 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.1489 0.5385 -2.5435 34 1 3.2855 -0.9400 -3.6506 35 1 1.8326 -1.9681 -3.6508 36 1 1.6534 -0.5436 -7.0293 37 1 3.1774 -1.0113 -6.2373 38 1 1.8407 -2.9126 -6.7890 39 1 -0.2858 -0.7517 -4.3204 40 1 -3.3837 2.0150 -6.0849 41 1 3.1779 0.8573 2.1950 42 1 4.2878 -0.3958 4.7310 43 1 4.3335 -2.4784 6.0137 44 1 3.1322 -4.4641 5.2030 45 1 1.8705 -4.3868 3.0992 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507254215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:37 Heat of formation + Delta-G solvation = -44.050920 kcal Electronic energy + Delta-G solvation = -28144.275356 eV Core-core repulsion = 24128.648820 eV Total energy + Delta-G solvation = -4015.626536 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.57980 -39.68043 -38.01098 -37.29708 -35.06476 -34.40925 -33.57504 -32.49225 -31.47245 -30.54038 -29.10495 -28.60937 -25.75553 -24.53886 -23.37003 -23.01789 -22.04769 -21.30302 -20.25962 -19.83059 -18.10772 -17.46946 -17.22092 -16.92320 -16.52712 -16.24225 -15.87688 -15.37096 -15.30616 -14.59240 -14.36802 -14.18604 -13.99052 -13.79683 -13.55428 -13.30533 -13.14247 -13.09491 -12.86479 -12.56278 -12.41836 -12.26782 -12.21121 -11.82320 -11.71711 -11.54908 -11.07436 -11.04216 -10.91402 -10.74316 -10.25988 -10.15231 -9.70478 -9.67170 -9.48268 -9.05245 -8.77585 -8.74364 -8.26900 -7.39874 -5.87395 -3.24087 0.75743 1.22963 2.19657 2.58050 2.74839 3.30526 3.38368 3.41038 3.42666 3.57454 4.11411 4.50882 4.51469 4.69740 4.76677 4.79542 4.82148 4.85254 4.96498 5.07448 5.15860 5.17584 5.26605 5.32251 5.42483 5.49270 5.58690 5.65564 5.70818 5.77716 5.87520 5.89865 5.99010 6.09598 6.10551 6.18260 6.25666 6.29231 6.34544 6.52070 6.57346 6.72016 7.12028 7.72742 7.85896 8.08165 8.31413 8.38065 9.09297 9.81840 10.01954 11.30169 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016869 B = 0.002783 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.413902 B =10059.871914 C =10772.638894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.038 4.038 3 H 0.130 0.870 4 C 0.513 3.487 5 O -0.536 6.536 6 N -0.714 5.714 7 C 0.116 3.884 8 C 0.172 3.828 9 H 0.075 0.925 10 C 0.059 3.941 11 O -0.565 6.565 12 N -0.738 5.738 13 C -0.251 4.251 14 H 0.091 0.909 15 C 0.011 3.989 16 N -0.930 5.930 17 Si 0.879 3.121 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.273 1.273 21 C 0.075 3.925 22 C -0.211 4.211 23 C -0.127 4.127 24 C -0.073 4.073 25 C -0.140 4.140 26 C -0.099 4.099 27 C -0.105 4.105 28 C 0.056 3.944 29 O -0.175 6.175 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.410 0.590 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.031 0.969 38 H 0.366 0.634 39 H 0.366 0.634 40 H 0.260 0.740 41 H 0.158 0.842 42 H 0.125 0.875 43 H 0.127 0.873 44 H 0.133 0.867 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.010 -5.372 17.940 22.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.060 4.060 3 H 0.148 0.852 4 C 0.297 3.703 5 O -0.413 6.413 6 N -0.366 5.366 7 C -0.008 4.008 8 C 0.061 3.939 9 H 0.093 0.907 10 C -0.022 4.022 11 O -0.368 6.368 12 N -0.382 5.382 13 C -0.380 4.380 14 H 0.108 0.892 15 C -0.186 4.186 16 N -0.577 5.577 17 Si 0.709 3.291 18 H -0.209 1.209 19 H -0.218 1.218 20 H -0.199 1.199 21 C 0.027 3.973 22 C -0.230 4.230 23 C -0.128 4.128 24 C -0.092 4.092 25 C -0.158 4.158 26 C -0.117 4.117 27 C -0.124 4.124 28 C 0.008 3.992 29 O -0.075 6.075 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.246 0.754 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.049 0.951 38 H 0.211 0.789 39 H 0.199 0.801 40 H 0.070 0.930 41 H 0.176 0.824 42 H 0.143 0.857 43 H 0.145 0.855 44 H 0.151 0.849 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 12.042 -5.810 18.266 22.637 hybrid contribution -0.790 -0.529 -0.119 0.958 sum 11.252 -6.339 18.148 22.274 Atomic orbital electron populations 1.21865 0.90718 1.04074 1.04100 1.20099 0.98798 0.99385 0.87674 0.85224 1.20196 0.80777 0.84841 0.84440 1.90729 1.37937 1.25925 1.86710 1.45974 1.53100 1.32440 1.05067 1.21618 0.98283 0.97401 0.83546 1.20571 0.86391 0.96384 0.90545 0.90698 1.22996 0.95396 0.83088 1.00756 1.86526 1.81760 1.22251 1.46302 1.42744 1.00546 1.34963 1.59899 1.19042 0.90340 1.04776 1.23880 0.89154 1.24641 0.96253 0.97888 0.99784 1.69697 1.08599 1.33661 1.45757 0.86631 0.80177 0.82022 0.80294 1.20936 1.21764 1.19940 1.21529 0.97844 0.81871 0.96092 1.22151 1.05145 1.00422 0.95330 1.19917 1.01865 0.93775 0.97236 1.20261 0.97814 0.98382 0.92701 1.20740 1.01400 0.93010 1.00639 1.20889 0.96877 0.98903 0.95051 1.19970 1.02697 0.94969 0.94748 1.19662 0.96901 0.96132 0.86511 1.83999 1.61263 1.27472 1.34789 0.90018 0.91292 0.90776 0.75380 0.91637 0.90563 0.92755 0.95119 0.78857 0.80067 0.92952 0.82406 0.85658 0.85522 0.84945 0.85115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.07 37.16 0.34 -1.45 16 2 C -0.04 -0.48 3.11 -92.92 -0.29 -0.77 16 3 H 0.13 1.19 8.08 -51.93 -0.42 0.77 16 4 C 0.51 8.13 7.15 -10.98 -0.08 8.05 16 5 O -0.54 -10.51 15.78 -1.96 -0.03 -10.54 16 6 N -0.71 -10.99 5.28 -60.30 -0.32 -11.30 16 7 C 0.12 1.90 5.12 -4.04 -0.02 1.88 16 8 C 0.17 3.02 2.84 -67.93 -0.19 2.82 16 9 H 0.08 1.27 8.08 -51.94 -0.42 0.85 16 10 C 0.06 0.96 6.86 37.16 0.25 1.21 16 11 O -0.56 -9.41 12.64 -35.23 -0.45 -9.86 16 12 N -0.74 -16.04 4.31 -53.43 -0.23 -16.27 16 13 C -0.25 -6.50 10.41 -15.06 -0.16 -6.65 16 14 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 15 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 16 N -0.93 -27.84 13.97 55.49 0.78 -27.07 16 17 Si 0.88 21.35 27.74 -169.99 -4.71 16.63 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 20 H -0.27 -6.56 6.52 56.52 0.37 -6.19 16 21 C 0.08 1.06 5.12 -35.80 -0.18 0.87 16 22 C -0.21 -2.63 10.97 -37.62 -0.41 -3.04 16 23 C -0.13 -1.65 6.40 -105.16 -0.67 -2.32 16 24 C -0.07 -0.76 10.05 -39.69 -0.40 -1.16 16 25 C -0.14 -1.25 9.98 -39.94 -0.40 -1.65 16 26 C -0.10 -0.91 10.01 -39.54 -0.40 -1.31 16 27 C -0.11 -1.22 10.07 -39.47 -0.40 -1.62 16 28 C 0.06 0.80 7.42 -38.47 -0.29 0.51 16 29 O -0.17 -2.80 10.25 -3.63 -0.04 -2.84 16 30 H 0.08 0.98 7.56 -51.93 -0.39 0.58 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.41 6.03 7.56 -40.82 -0.31 5.72 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.43 7.39 -51.93 -0.38 1.04 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.37 4.34 9.12 45.56 0.42 4.76 16 39 H 0.37 8.29 5.66 -40.82 -0.23 8.06 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.16 1.48 8.06 -52.48 -0.42 1.05 16 42 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 45 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 381.60 15.07 5.75 5.75 Total: -1.00 -34.87 381.60 -8.20 -43.07 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -5.56 Total: 16.84 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -3.39 Total: -4.41 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.23 Total: -54.65 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.51 Total: -23.23 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.71 Total: 16.63 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.87 -8.20 -43.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507254215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.979 kcal (2) G-P(sol) polarization free energy of solvation -34.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds