Wall clock time and date at job start Tue Mar 31 2020 17:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 5 5 O 1.21273 * 120.00521 * 240.00093 * 4 2 1 6 6 N 1.34786 * 119.99672 * 60.00403 * 4 2 1 7 7 C 1.46499 * 119.99820 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.46799 * 180.02562 * 7 6 4 9 9 H 1.08988 * 109.47136 * 65.00031 * 8 7 6 10 10 C 1.53000 * 109.46672 * 185.00231 * 8 7 6 11 11 O 1.42901 * 109.47159 * 55.00341 * 10 8 7 12 12 N 1.46503 * 109.47196 * 304.99703 * 8 7 6 13 13 C 1.36931 * 119.99914 * 155.00017 * 12 8 7 14 14 H 1.08001 * 120.00232 * 0.02562 * 13 12 8 15 15 C 1.38814 * 120.00178 * 180.02562 * 13 12 8 16 16 N 1.31619 * 120.00094 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99985 * 0.02562 * 15 13 12 18 18 H 1.48496 * 109.47371 * 89.99974 * 17 15 13 19 19 H 1.48498 * 109.47317 * 210.00568 * 17 15 13 20 20 H 1.48508 * 109.46762 * 329.99956 * 17 15 13 21 21 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 22 22 C 1.34000 * 124.92361 * 239.99988 * 21 2 1 23 23 C 1.46779 * 106.18643 * 179.97438 * 22 21 2 24 24 C 1.39401 * 134.37170 * 179.97438 * 23 22 21 25 25 C 1.36740 * 119.71962 * 179.97438 * 24 23 22 26 26 C 1.38743 * 120.41297 * 359.97438 * 25 24 23 27 27 C 1.37845 * 120.68799 * 0.02726 * 26 25 24 28 28 C 1.38935 * 119.81909 * 359.97438 * 27 26 25 29 29 O 1.34452 * 124.92248 * 59.69383 * 21 2 1 30 30 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 31 31 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 33 33 H 0.96999 * 119.99591 * 359.97438 * 6 4 2 34 34 H 1.08992 * 109.47397 * 299.99990 * 7 6 4 35 35 H 1.08996 * 109.46733 * 60.00178 * 7 6 4 36 36 H 1.09006 * 109.46980 * 174.99764 * 10 8 7 37 37 H 1.09001 * 109.47326 * 295.00017 * 10 8 7 38 38 H 0.96701 * 113.99973 * 179.97438 * 11 10 8 39 39 H 0.96999 * 119.99947 * 335.01047 * 12 8 7 40 40 H 0.97000 * 119.99893 * 179.97438 * 16 15 13 41 41 H 1.08005 * 126.90518 * 359.96349 * 22 21 2 42 42 H 1.08002 * 120.14243 * 359.97438 * 24 23 22 43 43 H 1.07997 * 119.79665 * 180.02562 * 25 24 23 44 44 H 1.08007 * 119.65453 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.08934 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 2.1956 -0.9403 -3.6507 8 6 1.6861 -0.2187 -4.9000 9 1 2.1207 0.7797 -4.9454 10 6 2.0913 -1.0087 -6.1460 11 8 1.6196 -2.3528 -6.0322 12 7 0.2260 -0.1136 -4.8418 13 6 -0.4162 0.8854 -5.5233 14 1 0.1536 1.5957 -6.1041 15 6 -1.7996 0.9854 -5.4679 16 7 -2.4169 1.9454 -6.1234 17 14 -2.7852 -0.2427 -4.4629 18 1 -2.9413 0.2645 -3.0760 19 1 -4.1249 -0.4236 -5.0776 20 1 -2.0729 -1.5455 -4.4363 21 6 2.0323 -0.7104 1.2305 22 6 2.8059 -0.1565 2.1740 23 6 3.0464 -1.2044 3.1732 24 6 3.7582 -1.2651 4.3703 25 6 3.7829 -2.4301 5.0859 26 6 3.1041 -3.5502 4.6281 27 6 2.3950 -3.5090 3.4467 28 6 2.3571 -2.3353 2.7043 29 8 1.7644 -1.9902 1.5436 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.1489 0.5385 -2.5435 34 1 3.2855 -0.9400 -3.6506 35 1 1.8326 -1.9681 -3.6508 36 1 1.6534 -0.5436 -7.0293 37 1 3.1774 -1.0113 -6.2373 38 1 1.8407 -2.9126 -6.7890 39 1 -0.2858 -0.7517 -4.3204 40 1 -3.3837 2.0150 -6.0849 41 1 3.1779 0.8573 2.1950 42 1 4.2878 -0.3958 4.7310 43 1 4.3335 -2.4784 6.0137 44 1 3.1322 -4.4641 5.2030 45 1 1.8705 -4.3868 3.0992 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507254215.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:36 Heat of formation + Delta-G solvation = -69.743715 kcal Electronic energy + Delta-G solvation = -28145.389479 eV Core-core repulsion = 24128.648820 eV Total energy + Delta-G solvation = -4016.740659 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.50189 -40.93371 -38.90983 -38.63856 -36.48085 -35.51866 -35.15299 -33.54458 -33.13268 -31.34208 -30.63268 -29.60112 -26.99389 -25.61157 -25.20567 -23.91145 -22.97183 -22.24730 -21.72979 -21.01494 -19.88195 -18.46410 -18.33465 -18.29158 -17.65093 -17.22547 -16.96702 -16.66775 -16.47192 -16.17784 -15.62256 -15.19055 -15.11789 -15.03578 -14.80999 -14.65156 -14.42363 -14.28959 -14.14534 -14.01061 -13.46382 -13.20675 -13.20132 -12.98223 -12.85173 -12.66202 -12.63791 -12.61856 -12.37813 -11.87300 -11.85372 -11.78962 -11.17707 -11.06812 -10.86250 -10.76230 -10.10177 -9.58707 -9.32914 -9.13099 -8.00207 -5.32584 -0.07355 0.40410 1.27996 1.37635 1.43134 1.48082 1.51130 1.72013 2.21253 2.49198 2.77458 3.20910 3.30832 3.44065 3.63460 3.70149 3.73264 3.87351 3.93386 3.96692 4.08217 4.14253 4.27318 4.37649 4.40610 4.51388 4.52251 4.59596 4.64653 4.68523 4.76797 4.80866 4.92546 4.95943 5.08681 5.16190 5.25030 5.34560 5.41987 5.47547 5.50063 5.77925 5.79349 6.22334 6.23213 6.48890 7.00708 7.09182 7.15017 7.83896 8.03075 9.20643 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016869 B = 0.002783 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.413902 B =10059.871914 C =10772.638894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.029 4.029 3 H 0.167 0.833 4 C 0.512 3.488 5 O -0.578 6.578 6 N -0.710 5.710 7 C 0.127 3.873 8 C 0.167 3.833 9 H 0.086 0.914 10 C 0.063 3.937 11 O -0.585 6.585 12 N -0.740 5.740 13 C -0.220 4.220 14 H 0.069 0.931 15 C -0.052 4.052 16 N -0.979 5.979 17 Si 0.938 3.062 18 H -0.268 1.268 19 H -0.304 1.304 20 H -0.270 1.270 21 C 0.044 3.956 22 C -0.202 4.202 23 C -0.152 4.152 24 C -0.079 4.079 25 C -0.136 4.136 26 C -0.089 4.089 27 C -0.130 4.130 28 C 0.018 3.982 29 O -0.208 6.208 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.095 0.905 33 H 0.414 0.586 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.036 0.964 37 H 0.068 0.932 38 H 0.387 0.613 39 H 0.363 0.637 40 H 0.256 0.744 41 H 0.188 0.812 42 H 0.151 0.849 43 H 0.163 0.837 44 H 0.166 0.834 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.821 -5.568 20.443 25.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.050 4.050 3 H 0.184 0.816 4 C 0.298 3.702 5 O -0.457 6.457 6 N -0.361 5.361 7 C 0.003 3.997 8 C 0.058 3.942 9 H 0.104 0.896 10 C -0.017 4.017 11 O -0.392 6.392 12 N -0.383 5.383 13 C -0.351 4.351 14 H 0.087 0.913 15 C -0.244 4.244 16 N -0.629 5.629 17 Si 0.767 3.233 18 H -0.194 1.194 19 H -0.231 1.231 20 H -0.196 1.196 21 C -0.004 4.004 22 C -0.221 4.221 23 C -0.153 4.153 24 C -0.096 4.096 25 C -0.154 4.154 26 C -0.107 4.107 27 C -0.148 4.148 28 C -0.029 4.029 29 O -0.110 6.110 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.252 0.748 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.236 0.764 39 H 0.195 0.805 40 H 0.065 0.935 41 H 0.205 0.795 42 H 0.169 0.831 43 H 0.180 0.820 44 H 0.183 0.817 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 13.902 -6.024 20.776 25.713 hybrid contribution -1.178 -0.548 -0.844 1.549 sum 12.724 -6.571 19.932 24.543 Atomic orbital electron populations 1.21848 0.90450 1.02979 1.05101 1.20172 0.98880 1.00514 0.85447 0.81558 1.20795 0.79829 0.84276 0.85257 1.90706 1.39912 1.27815 1.87296 1.45951 1.52941 1.32357 1.04890 1.21425 0.98968 0.96005 0.83332 1.20823 0.83896 0.97547 0.91915 0.89609 1.22839 0.97468 0.82737 0.98684 1.86474 1.82252 1.22551 1.47915 1.42723 1.02324 1.33845 1.59375 1.19012 0.90089 1.04196 1.21762 0.91282 1.25251 0.97510 0.99834 1.01782 1.69843 1.08510 1.36091 1.48501 0.85669 0.78010 0.80080 0.79509 1.19362 1.23122 1.19600 1.21842 0.99564 0.81754 0.97237 1.22571 1.03657 1.01445 0.94427 1.20285 1.02820 0.93589 0.98557 1.20672 0.97241 0.99968 0.91756 1.21228 1.00574 0.92150 1.01450 1.21363 0.95012 1.00409 0.93916 1.20324 1.03981 0.94682 0.95835 1.20238 0.98153 0.97768 0.86747 1.83935 1.62362 1.28730 1.35945 0.90008 0.93436 0.88658 0.74829 0.90111 0.92800 0.94553 0.91374 0.76428 0.80454 0.93487 0.79513 0.83143 0.81958 0.81655 0.84710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.07 71.98 0.65 -2.71 16 2 C -0.03 -0.70 3.11 -12.28 -0.04 -0.74 16 3 H 0.17 2.63 8.08 -2.39 -0.02 2.61 16 4 C 0.51 16.02 7.15 87.65 0.63 16.65 16 5 O -0.58 -22.95 15.78 4.19 0.07 -22.88 16 6 N -0.71 -21.17 5.28 -463.07 -2.45 -23.62 16 7 C 0.13 4.04 5.12 86.38 0.44 4.48 16 8 C 0.17 5.64 2.84 44.99 0.13 5.77 16 9 H 0.09 2.75 8.08 -2.39 -0.02 2.73 16 10 C 0.06 1.95 6.86 71.98 0.49 2.44 16 11 O -0.58 -18.64 12.64 -148.98 -1.88 -20.52 16 12 N -0.74 -31.56 4.31 -322.95 -1.39 -32.95 16 13 C -0.22 -11.38 10.41 84.03 0.87 -10.51 16 14 H 0.07 3.85 8.06 -2.91 -0.02 3.83 16 15 C -0.05 -2.88 5.50 84.86 0.47 -2.41 16 16 N -0.98 -59.76 13.97 21.65 0.30 -59.46 16 17 Si 0.94 44.52 27.74 68.60 1.90 46.42 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.30 -14.97 7.11 99.48 0.71 -14.27 16 20 H -0.27 -12.50 6.52 99.48 0.65 -11.86 16 21 C 0.04 1.22 5.12 24.72 0.13 1.35 16 22 C -0.20 -4.78 10.97 23.54 0.26 -4.52 16 23 C -0.15 -3.81 6.40 -20.21 -0.13 -3.94 16 24 C -0.08 -1.43 10.05 22.20 0.22 -1.21 16 25 C -0.14 -2.00 9.98 22.04 0.22 -1.78 16 26 C -0.09 -1.44 10.01 22.30 0.22 -1.21 16 27 C -0.13 -2.98 10.07 22.34 0.23 -2.76 16 28 C 0.02 0.52 7.42 22.99 0.17 0.70 16 29 O -0.21 -6.92 10.25 -1.79 -0.02 -6.94 16 30 H 0.08 1.85 7.56 -2.39 -0.02 1.83 16 31 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.41 11.65 7.56 -92.71 -0.70 10.95 16 34 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.05 1.99 7.39 -2.39 -0.02 1.97 16 36 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.39 8.52 9.12 -74.06 -0.68 7.84 16 39 H 0.36 16.08 5.66 -92.71 -0.52 15.56 16 40 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 41 H 0.19 3.00 8.06 -2.91 -0.02 2.98 16 42 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 43 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 44 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16 45 H 0.13 2.77 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -78.29 381.60 0.57 -77.72 By element: Atomic # 1 Polarization: 43.56 SS G_CDS: -0.92 Total: 42.64 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 4.96 Total: -0.41 kcal Atomic # 7 Polarization: -112.49 SS G_CDS: -3.54 Total: -116.03 kcal Atomic # 8 Polarization: -48.51 SS G_CDS: -1.83 Total: -50.34 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.90 Total: 46.42 kcal Total: -78.29 0.57 -77.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507254215.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.975 kcal (2) G-P(sol) polarization free energy of solvation -78.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds