Wall clock time and date at job start Tue Mar 31 2020 17:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 5 5 O 1.21283 * 119.99803 * 119.99700 * 4 2 1 6 6 N 1.34777 * 119.99675 * 300.27576 * 4 2 1 7 7 C 1.46497 * 119.99525 * 179.72583 * 6 4 2 8 8 C 1.52999 * 109.46992 * 179.97438 * 7 6 4 9 9 H 1.08994 * 109.47462 * 64.99994 * 8 7 6 10 10 C 1.53001 * 109.47200 * 184.99961 * 8 7 6 11 11 O 1.42903 * 109.47040 * 55.00363 * 10 8 7 12 12 N 1.46501 * 109.47130 * 304.99930 * 8 7 6 13 13 C 1.36938 * 120.00226 * 154.99999 * 12 8 7 14 14 H 1.08003 * 119.99566 * 359.97438 * 13 12 8 15 15 C 1.38807 * 120.00578 * 180.02562 * 13 12 8 16 16 N 1.31630 * 119.99516 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00700 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46883 * 59.99698 * 17 15 13 19 19 H 1.48496 * 109.47523 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47194 * 300.00466 * 17 15 13 21 21 C 1.50703 * 109.46747 * 240.00334 * 2 1 3 22 22 C 1.33998 * 124.92116 * 119.72509 * 21 2 1 23 23 C 1.46787 * 106.18620 * 179.89536 * 22 21 2 24 24 C 1.39400 * 134.37083 * 180.11771 * 23 22 21 25 25 C 1.36740 * 119.71735 * 180.26678 * 24 23 22 26 26 C 1.38741 * 120.41386 * 359.97438 * 25 24 23 27 27 C 1.37843 * 120.68697 * 0.02562 * 26 25 24 28 28 C 1.38940 * 119.81885 * 359.97438 * 27 26 25 29 29 O 1.34445 * 124.92555 * 300.02108 * 21 2 1 30 30 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 31 31 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 33 33 H 0.97000 * 119.99894 * 359.71837 * 6 4 2 34 34 H 1.08995 * 109.47421 * 299.99467 * 7 6 4 35 35 H 1.09001 * 109.47621 * 60.00103 * 7 6 4 36 36 H 1.09005 * 109.46883 * 174.99911 * 10 8 7 37 37 H 1.08996 * 109.47431 * 294.99845 * 10 8 7 38 38 H 0.96701 * 113.99733 * 180.02562 * 11 10 8 39 39 H 0.96996 * 119.99960 * 334.99981 * 12 8 7 40 40 H 0.97001 * 119.99721 * 179.97438 * 16 15 13 41 41 H 1.08004 * 126.90631 * 0.02562 * 22 21 2 42 42 H 1.08004 * 120.14515 * 0.28108 * 24 23 22 43 43 H 1.07994 * 119.79075 * 180.02562 * 25 24 23 44 44 H 1.08000 * 119.65588 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.08931 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1190 6 7 1.7021 -0.2534 2.4545 7 6 2.1855 -0.9476 3.6505 8 6 1.6714 -0.2294 4.8998 9 1 0.5850 -0.3055 4.9416 10 6 2.2764 -0.8782 6.1464 11 8 3.7012 -0.8825 6.0374 12 7 2.0603 1.1821 4.8465 13 6 1.3309 2.1195 5.5279 14 1 0.4687 1.8184 6.1043 15 6 1.6990 3.4569 5.4769 16 7 2.7496 3.8240 4.7739 17 14 0.7037 4.7358 6.4058 18 1 0.7162 4.4153 7.8558 19 1 1.2998 6.0789 6.1911 20 1 -0.6960 4.7298 5.9097 21 6 2.0322 -0.7104 -1.2306 22 6 2.8015 -0.1548 -2.1767 23 6 3.0465 -1.2044 -3.1732 24 6 3.7583 -1.2650 -4.3703 25 6 3.7839 -2.4302 -5.0854 26 6 3.1069 -3.5509 -4.6266 27 6 2.3979 -3.5098 -3.4452 28 6 2.3589 -2.3357 -2.7033 29 8 1.7688 -1.9917 -1.5411 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.1445 0.5353 2.5435 34 1 1.8217 -1.9751 3.6463 35 1 3.2755 -0.9481 3.6549 36 1 1.9813 -0.3123 7.0301 37 1 1.9156 -1.9030 6.2341 38 1 4.1524 -1.2804 6.7945 39 1 2.8345 1.4526 4.3284 40 1 3.0066 4.7586 4.7380 41 1 3.1693 0.8604 -2.2001 42 1 4.2874 -0.3954 -4.7313 43 1 4.3353 -2.4786 -6.0127 44 1 3.1351 -4.4648 -5.2015 45 1 1.8747 -4.3881 -3.0969 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507254218.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:48 Heat of formation + Delta-G solvation = -71.935920 kcal Electronic energy + Delta-G solvation = -27949.409696 eV Core-core repulsion = 23932.573976 eV Total energy + Delta-G solvation = -4016.835720 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.49402 -40.88531 -38.86441 -38.56503 -36.40409 -35.47912 -35.09778 -33.46811 -32.91487 -31.33438 -30.16046 -29.54068 -26.93400 -25.72952 -25.37629 -23.90059 -22.95909 -22.24293 -21.64696 -20.95736 -19.43685 -18.44944 -18.32717 -18.16971 -17.60112 -17.18073 -17.03521 -16.63313 -16.31013 -16.10404 -15.65059 -15.25935 -15.10552 -14.93190 -14.83602 -14.54000 -14.44862 -14.13496 -14.02447 -13.72940 -13.40172 -13.18974 -13.03162 -12.95844 -12.73974 -12.62765 -12.60462 -12.59300 -12.27186 -11.90280 -11.84922 -11.71714 -11.16721 -11.01431 -10.81501 -10.72216 -10.04706 -9.57755 -9.12814 -8.99228 -7.88097 -5.17454 -0.06578 0.41217 1.27711 1.52193 1.53525 1.55813 1.59544 1.71359 2.24749 2.59497 2.78168 3.22824 3.43597 3.60881 3.65807 3.73866 3.89965 3.91793 3.98790 4.02821 4.09724 4.15721 4.29252 4.41210 4.43722 4.53783 4.56129 4.60527 4.67546 4.74743 4.80558 4.87138 4.93503 4.99598 5.11819 5.22420 5.26207 5.35004 5.46802 5.47083 5.50990 5.57104 5.78068 6.22165 6.30374 6.53633 7.05454 7.18898 7.38889 8.10375 8.36401 9.34348 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016982 B = 0.002556 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.400503 B =10953.643747 C =11832.698569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.033 4.033 3 H 0.150 0.850 4 C 0.512 3.488 5 O -0.582 6.582 6 N -0.704 5.704 7 C 0.130 3.870 8 C 0.163 3.837 9 H 0.082 0.918 10 C 0.063 3.937 11 O -0.585 6.585 12 N -0.721 5.721 13 C -0.237 4.237 14 H 0.081 0.919 15 C -0.070 4.070 16 N -0.966 5.966 17 Si 0.968 3.032 18 H -0.284 1.284 19 H -0.303 1.303 20 H -0.274 1.274 21 C 0.049 3.951 22 C -0.212 4.212 23 C -0.153 4.153 24 C -0.082 4.082 25 C -0.135 4.135 26 C -0.089 4.089 27 C -0.125 4.125 28 C 0.020 3.980 29 O -0.201 6.201 30 H 0.091 0.909 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.414 0.586 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.038 0.962 37 H 0.064 0.936 38 H 0.385 0.615 39 H 0.373 0.627 40 H 0.248 0.752 41 H 0.178 0.822 42 H 0.146 0.854 43 H 0.162 0.838 44 H 0.169 0.831 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.533 -12.279 -16.056 20.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.054 4.054 3 H 0.167 0.833 4 C 0.298 3.702 5 O -0.462 6.462 6 N -0.355 5.355 7 C 0.005 3.995 8 C 0.053 3.947 9 H 0.100 0.900 10 C -0.018 4.018 11 O -0.391 6.391 12 N -0.361 5.361 13 C -0.368 4.368 14 H 0.099 0.901 15 C -0.262 4.262 16 N -0.616 5.616 17 Si 0.798 3.202 18 H -0.211 1.211 19 H -0.230 1.230 20 H -0.200 1.200 21 C 0.001 3.999 22 C -0.231 4.231 23 C -0.154 4.154 24 C -0.100 4.100 25 C -0.153 4.153 26 C -0.107 4.107 27 C -0.144 4.144 28 C -0.027 4.027 29 O -0.103 6.103 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.251 0.749 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.233 0.767 39 H 0.204 0.796 40 H 0.057 0.943 41 H 0.196 0.804 42 H 0.164 0.836 43 H 0.180 0.820 44 H 0.186 0.814 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.500 -12.786 -16.406 21.092 hybrid contribution 0.096 1.179 1.405 1.837 sum -3.404 -11.607 -15.001 19.270 Atomic orbital electron populations 1.21806 0.89118 1.03419 1.05191 1.20151 1.00074 0.99732 0.85421 0.83290 1.20770 0.79820 0.84247 0.85314 1.90694 1.39840 1.28299 1.87350 1.45887 1.52772 1.32034 1.04788 1.21368 0.98791 0.95512 0.83791 1.20835 0.97872 0.84360 0.91605 0.90004 1.22901 0.81019 0.98878 0.98981 1.86526 1.19528 1.85235 1.47820 1.42463 1.33651 1.01140 1.58871 1.19562 1.07091 0.87840 1.22326 0.90081 1.25462 0.99401 0.99225 1.02138 1.69836 1.29058 1.16014 1.46676 0.85303 0.78325 0.78208 0.78378 1.21092 1.22990 1.19974 1.21793 0.99431 0.81731 0.96941 1.22560 1.04069 1.01386 0.95085 1.20264 1.02942 0.93639 0.98514 1.20657 0.97392 1.00053 0.91894 1.21221 1.00583 0.92103 1.01394 1.21380 0.94961 1.00306 0.94018 1.20337 1.03827 0.94554 0.95640 1.20238 0.98129 0.97659 0.86706 1.83914 1.62493 1.28204 1.35709 0.89025 0.92412 0.89373 0.74904 0.90760 0.93351 0.94393 0.91804 0.76713 0.79551 0.94274 0.80437 0.83598 0.81997 0.81380 0.84158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.07 71.98 0.65 -2.28 16 2 C -0.03 -0.89 3.12 -12.29 -0.04 -0.92 16 3 H 0.15 3.41 8.08 -2.39 -0.02 3.39 16 4 C 0.51 17.70 7.15 87.66 0.63 18.33 16 5 O -0.58 -24.92 15.77 4.52 0.07 -24.85 16 6 N -0.70 -23.43 5.28 -463.07 -2.44 -25.87 16 7 C 0.13 4.57 5.12 86.38 0.44 5.01 16 8 C 0.16 5.86 2.84 44.99 0.13 5.98 16 9 H 0.08 2.71 8.08 -2.39 -0.02 2.69 16 10 C 0.06 2.05 6.86 71.98 0.49 2.54 16 11 O -0.58 -20.35 12.64 -148.98 -1.88 -22.24 16 12 N -0.72 -33.27 4.51 -322.94 -1.46 -34.73 16 13 C -0.24 -11.93 9.93 84.03 0.83 -11.09 16 14 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 15 C -0.07 -3.74 5.50 84.86 0.47 -3.28 16 16 N -0.97 -56.57 13.06 21.65 0.28 -56.29 16 17 Si 0.97 43.67 29.55 68.60 2.03 45.69 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 21 C 0.05 1.49 5.13 24.72 0.13 1.62 16 22 C -0.21 -5.85 10.97 23.54 0.26 -5.59 16 23 C -0.15 -4.21 6.40 -20.21 -0.13 -4.34 16 24 C -0.08 -1.69 10.05 22.20 0.22 -1.47 16 25 C -0.14 -2.17 9.98 22.04 0.22 -1.95 16 26 C -0.09 -1.47 10.01 22.30 0.22 -1.24 16 27 C -0.13 -2.87 10.07 22.34 0.23 -2.65 16 28 C 0.02 0.59 7.42 22.99 0.17 0.76 16 29 O -0.20 -6.81 10.24 -1.37 -0.01 -6.83 16 30 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.09 1.68 7.55 -2.38 -0.02 1.66 16 33 H 0.41 13.23 7.55 -92.71 -0.70 12.53 16 34 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.05 1.99 7.39 -2.39 -0.02 1.97 16 36 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 37 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.38 9.44 9.12 -74.06 -0.68 8.76 16 39 H 0.37 19.58 7.80 -92.71 -0.72 18.86 16 40 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 41 H 0.18 3.89 8.06 -2.91 -0.02 3.87 16 42 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 43 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 44 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 45 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -75.29 384.68 0.45 -74.84 By element: Atomic # 1 Polarization: 51.88 SS G_CDS: -1.06 Total: 50.82 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 4.92 Total: -0.56 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -3.62 Total: -116.88 kcal Atomic # 8 Polarization: -52.09 SS G_CDS: -1.83 Total: -53.91 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -75.29 0.45 -74.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507254218.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.905 kcal (2) G-P(sol) polarization free energy of solvation -75.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds