Wall clock time and date at job start Tue Mar 31 2020 17:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.70967 * 2 1 4 4 C 1.53710 * 109.75010 * 120.77438 * 2 1 3 5 5 O 1.42957 * 109.15195 * 172.16632 * 4 2 1 6 6 C 1.42965 * 114.16436 * 297.28742 * 5 4 2 7 7 C 1.53298 * 109.22330 * 62.57701 * 6 5 4 8 8 N 1.47153 * 108.38566 * 307.70061 * 7 6 5 9 9 C 1.34771 * 120.98235 * 230.51141 * 8 7 6 10 10 O 1.21357 * 120.00230 * 173.51410 * 9 8 7 11 11 C 1.49353 * 119.99875 * 353.51156 * 9 8 7 12 12 O 1.21377 * 120.00022 * 353.79652 * 11 9 8 13 13 N 1.34779 * 119.99939 * 173.79839 * 11 9 8 14 14 C 1.39727 * 120.00069 * 184.06001 * 13 11 9 15 15 C 1.38923 * 120.08197 * 144.32896 * 14 13 11 16 16 C 1.38092 * 119.92911 * 180.02562 * 15 14 13 17 17 C 1.38294 * 120.07418 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.92106 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.47226 * 90.00026 * 18 17 16 20 20 H 1.08005 * 119.99938 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00245 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99874 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00257 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47075 * 89.99959 * 23 21 19 25 25 H 1.48507 * 109.46844 * 209.99780 * 23 21 19 26 26 H 1.48493 * 109.47236 * 329.99479 * 23 21 19 27 27 C 1.38295 * 120.15399 * 0.26841 * 17 16 15 28 28 C 1.38096 * 120.06991 * 359.45701 * 27 17 16 29 29 H 1.08999 * 109.47688 * 169.48272 * 1 2 3 30 30 H 1.09003 * 109.46865 * 289.48326 * 1 2 3 31 31 H 1.09005 * 109.47395 * 49.47951 * 1 2 3 32 32 H 1.08995 * 109.65935 * 52.19458 * 4 2 1 33 33 H 1.09004 * 109.47992 * 292.02556 * 4 2 1 34 34 H 1.09005 * 109.50947 * 302.65489 * 6 5 4 35 35 H 1.08999 * 109.51190 * 182.50630 * 6 5 4 36 36 H 1.08999 * 109.68100 * 187.97487 * 7 6 5 37 37 H 1.08999 * 109.67921 * 67.42568 * 7 6 5 38 38 H 0.97000 * 119.99946 * 4.05358 * 13 11 9 39 39 H 1.08003 * 120.03225 * 0.04345 * 15 14 13 40 40 H 1.07999 * 119.96250 * 179.97438 * 16 15 14 41 41 H 1.08998 * 109.46946 * 329.99651 * 18 17 16 42 42 H 1.08996 * 109.46471 * 209.99374 * 18 17 16 43 43 H 0.97002 * 120.00616 * 180.02562 * 22 21 19 44 44 H 1.07995 * 119.96466 * 179.70408 * 27 17 16 45 45 H 1.08005 * 120.03641 * 180.27190 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0493 -0.7402 1.2430 5 8 3.4670 -0.8929 1.1396 6 6 3.8906 -1.6868 0.0287 7 6 3.4646 -1.0001 -1.2740 8 7 2.0255 -0.7039 -1.1935 9 6 1.1869 -1.0619 -2.1859 10 8 -0.0103 -0.9159 -2.0511 11 6 1.7310 -1.6382 -3.4518 12 8 2.9304 -1.6804 -3.6331 13 7 0.8901 -2.1115 -4.3928 14 6 1.3995 -2.7274 -5.5389 15 6 0.7283 -3.8020 -6.1087 16 6 1.2349 -4.4087 -7.2410 17 6 2.4093 -3.9481 -7.8076 18 6 2.9588 -4.6124 -9.0437 19 6 2.3980 -3.9369 -10.2685 20 1 1.7120 -3.1094 -10.1624 21 6 2.7599 -4.3757 -11.5244 22 7 3.5948 -5.3835 -11.6536 23 14 2.0642 -3.5387 -13.0427 24 1 2.9579 -2.4236 -13.4465 25 1 1.9691 -4.5229 -14.1507 26 1 0.7127 -3.0044 -12.7379 27 6 3.0834 -2.8825 -7.2396 28 6 2.5794 -2.2675 -6.1105 29 1 -0.3634 -1.0104 -0.1876 30 1 -0.3633 0.3428 0.9689 31 1 -0.3634 0.6677 -0.7812 32 1 1.5811 -1.7223 1.3072 33 1 1.8095 -0.1634 2.1362 34 1 3.4290 -2.6724 0.0885 35 1 4.9755 -1.7902 0.0479 36 1 3.6565 -1.6626 -2.1180 37 1 4.0237 -0.0729 -1.4001 38 1 -0.0687 -2.0246 -4.2744 39 1 -0.1889 -4.1623 -5.6666 40 1 0.7137 -5.2444 -7.6842 41 1 2.6750 -5.6648 -9.0472 42 1 4.0455 -4.5290 -9.0483 43 1 3.8497 -5.6921 -12.5372 44 1 4.0028 -2.5283 -7.6818 45 1 3.1040 -1.4325 -5.6699 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001516209102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:13 Heat of formation + Delta-G solvation = -55.166916 kcal Electronic energy + Delta-G solvation = -28017.478735 eV Core-core repulsion = 24001.370174 eV Total energy + Delta-G solvation = -4016.108562 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.59836 -40.04801 -38.70272 -38.16988 -35.77621 -34.79429 -33.23345 -33.06573 -30.65687 -30.42027 -29.29858 -27.09725 -26.83314 -25.07161 -23.53029 -23.10742 -22.50065 -21.77967 -20.36057 -19.97548 -18.17313 -17.44875 -16.91406 -16.69394 -16.49239 -16.34056 -16.05030 -15.57695 -15.27260 -15.10699 -14.92183 -14.53950 -14.29176 -14.05292 -13.55129 -13.24320 -13.18005 -13.06102 -12.90416 -12.68205 -12.43624 -12.18766 -12.03783 -11.64052 -11.50948 -11.36683 -11.26441 -10.87350 -10.80421 -10.67072 -10.59591 -10.43937 -10.07212 -9.62277 -9.37777 -9.14177 -8.97703 -8.45975 -8.39526 -7.55681 -6.07156 -4.11438 0.97824 1.82313 1.94250 2.05399 2.92566 3.08760 3.28600 3.35028 3.38818 3.38925 4.00493 4.20581 4.31838 4.46860 4.48848 4.57400 4.64767 4.77764 4.91979 5.13051 5.17636 5.26678 5.32337 5.33261 5.37064 5.44607 5.51750 5.67350 5.72655 5.84280 5.95032 5.97106 6.09054 6.12539 6.52694 6.54469 6.63256 6.70467 6.71909 7.06263 7.07955 7.14482 7.42914 7.46623 7.58649 7.79048 7.80199 7.88368 8.27733 8.93803 9.52630 11.02489 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028378 B = 0.002162 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.437597 B =12949.317423 C =13394.586212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.106 3.894 3 H 0.086 0.914 4 C 0.052 3.948 5 O -0.381 6.381 6 C 0.046 3.954 7 C 0.035 3.965 8 N -0.583 5.583 9 C 0.515 3.485 10 O -0.512 6.512 11 C 0.501 3.499 12 O -0.498 6.498 13 N -0.630 5.630 14 C 0.090 3.910 15 C -0.133 4.133 16 C -0.109 4.109 17 C -0.034 4.034 18 C 0.047 3.953 19 C -0.512 4.512 20 H 0.057 0.943 21 C 0.058 3.942 22 N -0.894 5.894 23 Si 0.896 3.104 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.273 1.273 27 C -0.110 4.110 28 C -0.112 4.112 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.056 0.944 35 H 0.110 0.890 36 H 0.152 0.848 37 H 0.080 0.920 38 H 0.418 0.582 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.030 0.970 42 H 0.030 0.970 43 H 0.262 0.738 44 H 0.124 0.876 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.989 8.673 25.478 27.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.003 3.997 3 H 0.104 0.896 4 C -0.026 4.026 5 O -0.299 6.299 6 C -0.031 4.031 7 C -0.087 4.087 8 N -0.318 5.318 9 C 0.297 3.703 10 O -0.388 6.388 11 C 0.284 3.716 12 O -0.375 6.375 13 N -0.275 5.275 14 C -0.002 4.002 15 C -0.153 4.153 16 C -0.128 4.128 17 C -0.034 4.034 18 C 0.010 3.990 19 C -0.550 4.550 20 H 0.076 0.924 21 C -0.143 4.143 22 N -0.532 5.532 23 Si 0.723 3.277 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.198 1.198 27 C -0.129 4.129 28 C -0.132 4.132 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.125 0.875 34 H 0.074 0.926 35 H 0.128 0.872 36 H 0.168 0.832 37 H 0.098 0.902 38 H 0.255 0.745 39 H 0.135 0.865 40 H 0.143 0.857 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.142 0.858 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.581 8.701 25.464 27.147 hybrid contribution -0.932 0.458 -1.011 1.449 sum -4.513 9.159 24.453 26.500 Atomic orbital electron populations 1.22194 0.91556 1.04924 1.01266 1.22262 0.96862 0.96253 0.84309 0.89618 1.23165 0.81747 1.00317 0.97329 1.87968 1.21628 1.72271 1.48078 1.23097 1.01281 0.93630 0.85096 1.23612 0.78944 1.04101 1.01995 1.48000 1.09187 1.56298 1.18303 1.20007 0.86382 0.79476 0.84388 1.90817 1.14651 1.53494 1.79885 1.20244 0.86824 0.79719 0.84848 1.90513 1.14527 1.54770 1.77642 1.43027 1.10857 1.55605 1.17993 1.17522 0.97761 0.96286 0.88645 1.20796 1.00814 0.95320 0.98350 1.20919 0.96414 1.00492 0.94948 1.20797 0.93066 0.93926 0.95651 1.18379 0.96652 0.95707 0.88286 1.21044 1.27478 1.16634 0.89887 0.92437 1.25013 0.95127 0.95063 0.99137 1.69953 1.33730 1.26021 1.23533 0.86532 0.79531 0.79218 0.82404 1.20571 1.21156 1.19809 1.21025 1.00560 0.96354 0.94925 1.21104 0.95715 1.00466 0.95866 0.90151 0.92886 0.90885 0.92373 0.87486 0.92591 0.87172 0.83173 0.90181 0.74507 0.86492 0.85727 0.95197 0.95178 0.92800 0.85832 0.85383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 7.66 37.15 0.28 -0.86 16 2 C 0.11 0.85 3.70 -67.21 -0.25 0.60 16 3 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 4 C 0.05 0.37 6.29 37.53 0.24 0.61 16 5 O -0.38 -3.38 10.74 -35.23 -0.38 -3.76 16 6 C 0.05 0.36 6.98 37.31 0.26 0.62 16 7 C 0.03 0.31 6.17 -3.53 -0.02 0.29 16 8 N -0.58 -5.70 3.01 -165.04 -0.50 -6.20 16 9 C 0.51 5.84 7.65 -11.63 -0.09 5.75 16 10 O -0.51 -6.18 12.05 5.49 0.07 -6.11 16 11 C 0.50 6.36 7.60 -11.63 -0.09 6.27 16 12 O -0.50 -7.01 10.64 5.47 0.06 -6.95 16 13 N -0.63 -8.02 5.32 -10.29 -0.05 -8.07 16 14 C 0.09 1.40 6.28 -83.75 -0.53 0.87 16 15 C -0.13 -2.07 9.97 -39.38 -0.39 -2.46 16 16 C -0.11 -2.01 9.69 -39.61 -0.38 -2.39 16 17 C -0.03 -0.71 5.07 -104.58 -0.53 -1.24 16 18 C 0.05 1.17 5.10 -29.03 -0.15 1.02 16 19 C -0.51 -14.04 9.09 -34.44 -0.31 -14.36 16 20 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 23 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 27 C -0.11 -2.12 9.69 -39.61 -0.38 -2.50 16 28 C -0.11 -1.92 8.69 -39.38 -0.34 -2.26 16 29 H 0.08 0.77 6.43 -51.93 -0.33 0.44 16 30 H 0.05 0.31 8.12 -51.93 -0.42 -0.11 16 31 H 0.07 0.69 7.12 -51.93 -0.37 0.32 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.15 1.57 4.39 -54.56 -0.24 1.33 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.42 4.46 8.30 -40.82 -0.34 4.12 16 39 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 40 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 41 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 42 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 43 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 45 H 0.13 2.11 6.28 -52.48 -0.33 1.78 16 LS Contribution 366.91 15.07 5.53 5.53 Total: -1.00 -30.79 366.91 -8.56 -39.35 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.22 Total: 3.76 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -2.78 Total: -8.51 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.18 Total: -39.56 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.25 Total: -16.82 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.79 -8.56 -39.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001516209102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.813 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds