Wall clock time and date at job start Tue Mar 31 2020 17:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.70967 * 2 1 4 4 C 1.53710 * 109.75010 * 120.77438 * 2 1 3 5 5 O 1.42957 * 109.15195 * 172.16632 * 4 2 1 6 6 C 1.42965 * 114.16436 * 297.28742 * 5 4 2 7 7 C 1.53298 * 109.22330 * 62.57701 * 6 5 4 8 8 N 1.47153 * 108.38566 * 307.70061 * 7 6 5 9 9 C 1.34771 * 120.98235 * 230.51141 * 8 7 6 10 10 O 1.21357 * 120.00230 * 173.51410 * 9 8 7 11 11 C 1.49353 * 119.99875 * 353.51156 * 9 8 7 12 12 O 1.21377 * 120.00022 * 353.79652 * 11 9 8 13 13 N 1.34779 * 119.99939 * 173.79839 * 11 9 8 14 14 C 1.39727 * 120.00069 * 184.06001 * 13 11 9 15 15 C 1.38923 * 120.08197 * 144.32896 * 14 13 11 16 16 C 1.38092 * 119.92911 * 180.02562 * 15 14 13 17 17 C 1.38294 * 120.07418 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.92106 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.47226 * 90.00026 * 18 17 16 20 20 H 1.08005 * 119.99938 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00245 * 180.02562 * 19 18 17 22 22 N 1.31515 * 119.99874 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00257 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47075 * 89.99959 * 23 21 19 25 25 H 1.48507 * 109.46844 * 209.99780 * 23 21 19 26 26 H 1.48493 * 109.47236 * 329.99479 * 23 21 19 27 27 C 1.38295 * 120.15399 * 0.26841 * 17 16 15 28 28 C 1.38096 * 120.06991 * 359.45701 * 27 17 16 29 29 H 1.08999 * 109.47688 * 169.48272 * 1 2 3 30 30 H 1.09003 * 109.46865 * 289.48326 * 1 2 3 31 31 H 1.09005 * 109.47395 * 49.47951 * 1 2 3 32 32 H 1.08995 * 109.65935 * 52.19458 * 4 2 1 33 33 H 1.09004 * 109.47992 * 292.02556 * 4 2 1 34 34 H 1.09005 * 109.50947 * 302.65489 * 6 5 4 35 35 H 1.08999 * 109.51190 * 182.50630 * 6 5 4 36 36 H 1.08999 * 109.68100 * 187.97487 * 7 6 5 37 37 H 1.08999 * 109.67921 * 67.42568 * 7 6 5 38 38 H 0.97000 * 119.99946 * 4.05358 * 13 11 9 39 39 H 1.08003 * 120.03225 * 0.04345 * 15 14 13 40 40 H 1.07999 * 119.96250 * 179.97438 * 16 15 14 41 41 H 1.08998 * 109.46946 * 329.99651 * 18 17 16 42 42 H 1.08996 * 109.46471 * 209.99374 * 18 17 16 43 43 H 0.97002 * 120.00616 * 180.02562 * 22 21 19 44 44 H 1.07995 * 119.96466 * 179.70408 * 27 17 16 45 45 H 1.08005 * 120.03641 * 180.27190 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0493 -0.7402 1.2430 5 8 3.4670 -0.8929 1.1396 6 6 3.8906 -1.6868 0.0287 7 6 3.4646 -1.0001 -1.2740 8 7 2.0255 -0.7039 -1.1935 9 6 1.1869 -1.0619 -2.1859 10 8 -0.0103 -0.9159 -2.0511 11 6 1.7310 -1.6382 -3.4518 12 8 2.9304 -1.6804 -3.6331 13 7 0.8901 -2.1115 -4.3928 14 6 1.3995 -2.7274 -5.5389 15 6 0.7283 -3.8020 -6.1087 16 6 1.2349 -4.4087 -7.2410 17 6 2.4093 -3.9481 -7.8076 18 6 2.9588 -4.6124 -9.0437 19 6 2.3980 -3.9369 -10.2685 20 1 1.7120 -3.1094 -10.1624 21 6 2.7599 -4.3757 -11.5244 22 7 3.5948 -5.3835 -11.6536 23 14 2.0642 -3.5387 -13.0427 24 1 2.9579 -2.4236 -13.4465 25 1 1.9691 -4.5229 -14.1507 26 1 0.7127 -3.0044 -12.7379 27 6 3.0834 -2.8825 -7.2396 28 6 2.5794 -2.2675 -6.1105 29 1 -0.3634 -1.0104 -0.1876 30 1 -0.3633 0.3428 0.9689 31 1 -0.3634 0.6677 -0.7812 32 1 1.5811 -1.7223 1.3072 33 1 1.8095 -0.1634 2.1362 34 1 3.4290 -2.6724 0.0885 35 1 4.9755 -1.7902 0.0479 36 1 3.6565 -1.6626 -2.1180 37 1 4.0237 -0.0729 -1.4001 38 1 -0.0687 -2.0246 -4.2744 39 1 -0.1889 -4.1623 -5.6666 40 1 0.7137 -5.2444 -7.6842 41 1 2.6750 -5.6648 -9.0472 42 1 4.0455 -4.5290 -9.0483 43 1 3.8497 -5.6921 -12.5372 44 1 4.0028 -2.5283 -7.6818 45 1 3.1040 -1.4325 -5.6699 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001516209102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:12 Heat of formation + Delta-G solvation = -74.596866 kcal Electronic energy + Delta-G solvation = -28018.321281 eV Core-core repulsion = 24001.370174 eV Total energy + Delta-G solvation = -4016.951107 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.52029 -41.05787 -39.68227 -39.25539 -36.82588 -35.83375 -34.96468 -33.90474 -32.31419 -31.82668 -30.05676 -28.71697 -27.46002 -26.31484 -24.81075 -24.14284 -23.80248 -22.80393 -21.73669 -20.95424 -19.10091 -18.54278 -18.48007 -17.74567 -17.43673 -17.37755 -16.91703 -16.76691 -16.30765 -16.16196 -15.93868 -15.85093 -15.46208 -15.20629 -14.65250 -14.53593 -14.42352 -14.26584 -13.89222 -13.76070 -13.71581 -13.29671 -13.20450 -13.11674 -12.77134 -12.61781 -12.44571 -12.25453 -12.10978 -11.94141 -11.73633 -11.58589 -11.46939 -11.32188 -11.06062 -10.59849 -10.08649 -9.79586 -9.71174 -9.00343 -8.18694 -6.32436 -0.06009 0.53645 0.60026 1.05957 1.40832 1.41319 1.52785 1.94282 2.18622 2.40213 2.81605 2.93661 3.07864 3.11563 3.58980 3.83200 3.98437 4.01248 4.01671 4.10231 4.14406 4.26033 4.35825 4.46939 4.55071 4.56791 4.62809 4.68306 4.77701 4.80988 4.90759 5.01941 5.05277 5.10534 5.26407 5.31497 5.38236 5.39641 5.45471 5.56110 5.75566 5.82785 6.01646 6.04869 6.06652 6.10956 6.22089 6.55414 6.77230 6.80419 7.36063 8.89790 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.028378 B = 0.002162 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.437597 B =12949.317423 C =13394.586212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.103 3.897 3 H 0.094 0.906 4 C 0.053 3.947 5 O -0.393 6.393 6 C 0.049 3.951 7 C 0.036 3.964 8 N -0.580 5.580 9 C 0.517 3.483 10 O -0.520 6.520 11 C 0.502 3.498 12 O -0.512 6.512 13 N -0.624 5.624 14 C 0.106 3.894 15 C -0.120 4.120 16 C -0.114 4.114 17 C -0.066 4.066 18 C 0.056 3.944 19 C -0.527 4.527 20 H 0.055 0.945 21 C 0.004 3.996 22 N -0.930 5.930 23 Si 0.964 3.036 24 H -0.273 1.273 25 H -0.280 1.280 26 H -0.265 1.265 27 C -0.119 4.119 28 C -0.114 4.114 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.132 0.868 34 H 0.056 0.944 35 H 0.126 0.874 36 H 0.138 0.862 37 H 0.084 0.916 38 H 0.430 0.570 39 H 0.157 0.843 40 H 0.128 0.872 41 H 0.008 0.992 42 H 0.003 0.997 43 H 0.265 0.735 44 H 0.116 0.884 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.534 10.086 27.498 29.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.001 3.999 3 H 0.112 0.888 4 C -0.025 4.025 5 O -0.312 6.312 6 C -0.028 4.028 7 C -0.085 4.085 8 N -0.315 5.315 9 C 0.300 3.700 10 O -0.398 6.398 11 C 0.285 3.715 12 O -0.389 6.389 13 N -0.271 5.271 14 C 0.014 3.986 15 C -0.139 4.139 16 C -0.133 4.133 17 C -0.066 4.066 18 C 0.019 3.981 19 C -0.564 4.564 20 H 0.074 0.926 21 C -0.194 4.194 22 N -0.570 5.570 23 Si 0.789 3.211 24 H -0.199 1.199 25 H -0.205 1.205 26 H -0.189 1.189 27 C -0.137 4.137 28 C -0.133 4.133 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.150 0.850 34 H 0.074 0.926 35 H 0.144 0.856 36 H 0.155 0.845 37 H 0.102 0.898 38 H 0.270 0.730 39 H 0.174 0.826 40 H 0.145 0.855 41 H 0.026 0.974 42 H 0.021 0.979 43 H 0.074 0.926 44 H 0.134 0.866 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.134 10.131 27.525 29.776 hybrid contribution -0.437 0.060 -1.470 1.535 sum -5.570 10.191 26.055 28.526 Atomic orbital electron populations 1.22075 0.91385 1.03609 1.02123 1.22455 0.96973 0.96608 0.83869 0.88838 1.23296 0.80892 1.00643 0.97634 1.87960 1.22606 1.72390 1.48208 1.23137 1.02301 0.93255 0.84147 1.23574 0.78583 1.04092 1.02284 1.48129 1.09367 1.55637 1.18328 1.19712 0.86375 0.79789 0.84167 1.90833 1.14850 1.54127 1.79942 1.20605 0.86575 0.79084 0.85260 1.90537 1.15262 1.55017 1.78060 1.42957 1.11619 1.55423 1.17082 1.17568 0.96711 0.95583 0.88785 1.21050 1.01676 0.94329 0.96873 1.20981 0.95582 1.00820 0.95879 1.20472 0.95138 0.95627 0.95407 1.18112 0.95000 0.94766 0.90242 1.21376 1.27347 1.16583 0.91141 0.92630 1.25917 0.95404 0.95672 1.02445 1.70076 1.35031 1.27481 1.24401 0.85457 0.79069 0.78235 0.78369 1.19888 1.20534 1.18917 1.20959 1.00528 0.96386 0.95866 1.21132 0.96516 1.00529 0.95173 0.91696 0.90362 0.92433 0.92354 0.85050 0.92570 0.85582 0.84531 0.89791 0.73010 0.82587 0.85452 0.97409 0.97913 0.92592 0.86598 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 7.66 71.98 0.55 -1.31 16 2 C 0.10 1.42 3.70 45.10 0.17 1.58 16 3 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 4 C 0.05 0.60 6.29 72.22 0.45 1.06 16 5 O -0.39 -6.03 10.74 -148.98 -1.60 -7.64 16 6 C 0.05 0.67 6.98 72.08 0.50 1.17 16 7 C 0.04 0.59 6.17 86.35 0.53 1.13 16 8 N -0.58 -10.32 3.01 -794.44 -2.39 -12.72 16 9 C 0.52 10.87 7.65 87.24 0.67 11.54 16 10 O -0.52 -11.62 12.05 -3.27 -0.04 -11.66 16 11 C 0.50 11.90 7.60 87.24 0.66 12.57 16 12 O -0.51 -13.83 10.64 -3.33 -0.04 -13.87 16 13 N -0.62 -14.50 5.32 -304.83 -1.62 -16.12 16 14 C 0.11 3.13 6.28 38.21 0.24 3.37 16 15 C -0.12 -3.47 9.97 22.40 0.22 -3.24 16 16 C -0.11 -4.17 9.69 22.25 0.22 -3.95 16 17 C -0.07 -2.85 5.07 -19.84 -0.10 -2.96 16 18 C 0.06 2.95 5.10 29.10 0.15 3.10 16 19 C -0.53 -29.75 9.09 25.60 0.23 -29.52 16 20 H 0.06 3.09 7.74 -2.91 -0.02 3.06 16 21 C 0.00 0.21 5.46 84.65 0.46 0.67 16 22 N -0.93 -55.75 13.29 21.45 0.28 -55.47 16 23 Si 0.96 44.04 29.54 68.60 2.03 46.06 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 26 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 27 C -0.12 -4.69 9.69 22.25 0.22 -4.47 16 28 C -0.11 -3.84 8.69 22.40 0.19 -3.65 16 29 H 0.06 1.12 6.43 -2.39 -0.02 1.11 16 30 H 0.08 0.68 8.12 -2.39 -0.02 0.66 16 31 H 0.06 0.99 7.12 -2.38 -0.02 0.97 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.13 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.14 2.72 4.39 -44.04 -0.19 2.53 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.43 7.99 8.30 -92.71 -0.77 7.22 16 39 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 40 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 41 H 0.01 0.43 8.08 -2.39 -0.02 0.41 16 42 H 0.00 0.15 8.08 -2.39 -0.02 0.13 16 43 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 44 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 45 H 0.13 4.36 6.28 -2.91 -0.02 4.34 16 Total: -1.00 -67.56 366.91 2.06 -65.50 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.07 Total: 18.82 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: 5.37 Total: -12.92 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -3.73 Total: -84.30 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -1.68 Total: -33.17 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -67.56 2.06 -65.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001516209102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.096 kcal (2) G-P(sol) polarization free energy of solvation -67.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds