Wall clock time and date at job start Tue Mar 31 2020 17:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.55197 * 2 1 4 4 C 1.55343 * 110.58176 * 123.05601 * 2 1 3 5 5 C 1.54814 * 101.92866 * 155.54486 * 4 2 1 6 6 H 1.09005 * 110.48623 * 220.33885 * 5 4 2 7 7 N 1.46494 * 110.48963 * 97.82443 * 5 4 2 8 8 C 1.34774 * 120.00442 * 156.84802 * 7 5 4 9 9 O 1.21365 * 119.99677 * 359.97438 * 8 7 5 10 10 C 1.49350 * 120.00258 * 180.02562 * 8 7 5 11 11 O 1.21377 * 120.00068 * 359.97438 * 10 8 7 12 12 N 1.34781 * 119.99986 * 179.97438 * 10 8 7 13 13 C 1.39723 * 119.99665 * 185.27021 * 12 10 8 14 14 C 1.38933 * 120.07585 * 213.33074 * 13 12 10 15 15 C 1.38091 * 119.92164 * 180.02562 * 14 13 12 16 16 C 1.38288 * 120.08298 * 0.02562 * 15 14 13 17 17 C 1.50698 * 119.93060 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.47267 * 89.99956 * 17 16 15 19 19 H 1.08005 * 119.99598 * 359.97438 * 18 17 16 20 20 C 1.37871 * 119.99945 * 179.73034 * 18 17 16 21 21 N 1.31516 * 119.99973 * 180.27639 * 20 18 17 22 22 Si 1.86802 * 120.00257 * 0.27175 * 20 18 17 23 23 H 1.48491 * 109.46897 * 90.00204 * 22 20 18 24 24 H 1.48503 * 109.47250 * 210.00368 * 22 20 18 25 25 H 1.48500 * 109.46884 * 330.00060 * 22 20 18 26 26 C 1.38304 * 120.14642 * 0.25434 * 16 15 14 27 27 C 1.38092 * 120.07501 * 359.45066 * 26 16 15 28 28 C 1.54100 * 104.30487 * 339.08014 * 5 4 2 29 29 O 1.43744 * 107.29682 * 358.03339 * 28 5 4 30 30 H 1.09001 * 109.47570 * 181.42209 * 1 2 3 31 31 H 1.08999 * 109.47158 * 301.42291 * 1 2 3 32 32 H 1.09003 * 109.47175 * 61.42402 * 1 2 3 33 33 H 1.08996 * 110.95871 * 37.41682 * 4 2 1 34 34 H 1.08992 * 111.00826 * 273.69662 * 4 2 1 35 35 H 0.97000 * 119.99820 * 336.84233 * 7 5 4 36 36 H 0.96998 * 119.99904 * 5.28045 * 12 10 8 37 37 H 1.07998 * 120.03557 * 359.97438 * 14 13 12 38 38 H 1.08006 * 119.95937 * 179.97438 * 15 14 13 39 39 H 1.09004 * 109.46642 * 330.00041 * 17 16 15 40 40 H 1.09002 * 109.47168 * 210.00087 * 17 16 15 41 41 H 0.96995 * 120.00229 * 179.97438 * 21 20 18 42 42 H 1.08004 * 119.95586 * 179.72597 * 26 16 15 43 43 H 1.08004 * 120.03796 * 180.25250 * 27 26 16 44 44 H 1.09001 * 109.87888 * 117.46011 * 28 5 4 45 45 H 1.09002 * 109.87909 * 238.46352 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0761 -0.7932 1.2189 5 6 3.4794 -1.2178 0.7217 6 1 3.6997 -2.2403 1.0286 7 7 4.5025 -0.3000 1.2287 8 6 5.7836 -0.7067 1.3272 9 8 6.0896 -1.8336 0.9964 10 6 6.8265 0.2289 1.8446 11 8 6.5203 1.3557 2.1760 12 7 8.1075 -0.1781 1.9437 13 6 9.0625 0.6569 2.5294 14 6 10.3745 0.6419 2.0727 15 6 11.3158 1.4681 2.6542 16 6 10.9540 2.3095 3.6904 17 6 11.9842 3.2093 4.3229 18 6 12.0128 4.5290 3.5959 19 1 11.3514 4.6989 2.7591 20 6 12.8797 5.5212 4.0020 21 7 12.9008 6.6748 3.3709 22 14 14.0241 5.2269 5.4488 23 1 15.3034 4.6536 4.9593 24 1 14.2907 6.5146 6.1389 25 1 13.3879 4.2789 6.3983 26 6 9.6501 2.3228 4.1513 27 6 8.7023 1.5036 3.5703 28 6 3.3839 -1.1242 -0.8135 29 8 2.0384 -0.7336 -1.1349 30 1 -0.3634 -1.0273 0.0255 31 1 -0.3633 0.5358 0.8769 32 1 -0.3634 0.4916 -0.9025 33 1 1.4564 -1.6657 1.4256 34 1 2.1521 -0.1544 2.0986 35 1 4.2578 0.6005 1.4934 36 1 8.3665 -1.0506 1.6082 37 1 10.6580 -0.0158 1.2644 38 1 12.3360 1.4566 2.2999 39 1 12.9653 2.7385 4.2602 40 1 11.7275 3.3763 5.3690 41 1 13.5104 7.3730 3.6569 42 1 9.3720 2.9779 4.9637 43 1 7.6834 1.5175 3.9281 44 1 4.0853 -0.3764 -1.1836 45 1 3.6070 -2.0939 -1.2586 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001516291010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:34 Heat of formation + Delta-G solvation = -87.739194 kcal Electronic energy + Delta-G solvation = -27096.848220 eV Core-core repulsion = 23079.327219 eV Total energy + Delta-G solvation = -4017.521002 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 4.30 seconds Orbital eigenvalues (eV) -41.30871 -40.23841 -39.09290 -38.08646 -35.67476 -34.79008 -32.98847 -32.59964 -30.96438 -30.67136 -30.46525 -27.54427 -26.60752 -25.21148 -22.97452 -22.53152 -22.02912 -21.54874 -20.84344 -20.12357 -18.98805 -17.71348 -17.06940 -16.78697 -16.67687 -16.28637 -16.08500 -15.58543 -15.41533 -15.06423 -14.76290 -14.39381 -14.15008 -13.89126 -13.55863 -13.31721 -13.16024 -13.01626 -12.81926 -12.55252 -12.49236 -12.46531 -12.21975 -12.02277 -11.80989 -11.73868 -11.49531 -11.31745 -10.87184 -10.56907 -10.38723 -10.19490 -10.05609 -9.82454 -9.79103 -9.71660 -9.34167 -8.60027 -8.45609 -7.56061 -6.08558 -4.08116 0.95998 1.83286 1.89791 2.04719 2.94001 3.23152 3.27224 3.35313 3.37553 3.40080 3.84246 4.12413 4.13801 4.32602 4.35486 4.39842 4.55547 4.63996 4.82700 5.03176 5.11784 5.21044 5.21482 5.28256 5.29574 5.36376 5.38784 5.49497 5.64367 5.70649 5.73592 5.81612 5.87136 6.01530 6.37499 6.42795 6.46219 6.62040 6.71003 6.88228 6.95853 6.97939 7.15567 7.40063 7.47884 7.52969 7.67600 7.78165 8.47864 8.97076 9.51186 11.04314 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024741 B = 0.001934 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.440807 B =14471.125092 C =15033.255230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 H 0.074 0.926 4 C -0.158 4.158 5 C 0.109 3.891 6 H 0.111 0.889 7 N -0.695 5.695 8 C 0.515 3.485 9 O -0.516 6.516 10 C 0.501 3.499 11 O -0.498 6.498 12 N -0.634 5.634 13 C 0.100 3.900 14 C -0.134 4.134 15 C -0.105 4.105 16 C -0.033 4.033 17 C 0.014 3.986 18 C -0.514 4.514 19 H 0.074 0.926 20 C 0.069 3.931 21 N -0.899 5.899 22 Si 0.878 3.122 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.265 1.265 26 C -0.105 4.105 27 C -0.114 4.114 28 C 0.037 3.963 29 O -0.370 6.370 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.415 0.585 36 H 0.418 0.582 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.025 0.975 40 H 0.029 0.971 41 H 0.264 0.736 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.066 0.934 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.734 -18.411 -4.183 28.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.010 3.990 3 H 0.092 0.908 4 C -0.196 4.196 5 C 0.004 3.996 6 H 0.129 0.871 7 N -0.350 5.350 8 C 0.296 3.704 9 O -0.391 6.391 10 C 0.282 3.718 11 O -0.372 6.372 12 N -0.280 5.280 13 C 0.008 3.992 14 C -0.154 4.154 15 C -0.123 4.123 16 C -0.033 4.033 17 C -0.023 4.023 18 C -0.552 4.552 19 H 0.092 0.908 20 C -0.133 4.133 21 N -0.537 5.537 22 Si 0.705 3.295 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.189 1.189 26 C -0.124 4.124 27 C -0.134 4.134 28 C -0.041 4.041 29 O -0.289 6.289 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.253 0.747 36 H 0.255 0.745 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.043 0.957 40 H 0.047 0.953 41 H 0.074 0.926 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.085 0.915 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -21.814 -18.309 -4.389 28.815 hybrid contribution 0.844 0.122 0.713 1.111 sum -20.970 -18.187 -3.675 28.001 Atomic orbital electron populations 1.21779 0.92667 1.03099 1.02854 1.23280 0.95707 0.95466 0.84527 0.90801 1.23581 0.94513 1.02153 0.99349 1.22459 0.87388 0.95571 0.94196 0.87111 1.45834 1.06661 1.17818 1.64687 1.20137 0.83826 0.87511 0.78972 1.90779 1.81048 1.19698 1.47562 1.20032 0.83872 0.87524 0.80407 1.90831 1.80733 1.18907 1.46690 1.43013 1.06743 1.20312 1.57971 1.17516 0.88446 0.97104 0.96179 1.20775 0.91948 1.01890 1.00820 1.20889 0.99349 0.95677 0.96410 1.20372 0.95243 0.93438 0.94257 1.18828 0.92607 0.94567 0.96340 1.20929 1.22188 0.95596 1.16458 0.90775 1.25009 0.96857 0.94901 0.96533 1.69900 1.38055 1.04785 1.40976 0.86799 0.81516 0.77804 0.83344 1.20175 1.21257 1.18916 1.20974 0.92480 0.98351 1.00559 1.20967 0.99979 0.97353 0.95060 1.23646 0.84871 1.01707 0.93845 1.88936 1.27457 1.73656 1.38895 0.91643 0.90854 0.91564 0.88488 0.88920 0.74732 0.74516 0.86272 0.85611 0.95715 0.95288 0.92586 0.85738 0.85703 0.91547 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.66 37.16 0.36 -0.34 16 2 C 0.07 0.41 3.98 -25.49 -0.10 0.31 16 3 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 4 C -0.16 -0.77 6.24 -24.53 -0.15 -0.92 16 5 C 0.11 0.74 3.36 -66.40 -0.22 0.52 16 6 H 0.11 0.79 7.61 -51.93 -0.40 0.39 16 7 N -0.70 -5.63 4.99 -52.79 -0.26 -5.89 16 8 C 0.51 5.50 7.89 -11.63 -0.09 5.41 16 9 O -0.52 -6.22 16.16 5.48 0.09 -6.14 16 10 C 0.50 6.42 7.62 -11.63 -0.09 6.33 16 11 O -0.50 -7.59 14.16 5.47 0.08 -7.51 16 12 N -0.63 -8.07 5.32 -10.30 -0.05 -8.12 16 13 C 0.10 1.56 6.28 -83.75 -0.53 1.03 16 14 C -0.13 -2.08 9.96 -39.38 -0.39 -2.47 16 15 C -0.10 -1.89 9.69 -39.62 -0.38 -2.28 16 16 C -0.03 -0.67 5.07 -104.58 -0.53 -1.20 16 17 C 0.01 0.32 4.17 -29.04 -0.12 0.20 16 18 C -0.51 -14.45 9.65 -34.44 -0.33 -14.78 16 19 H 0.07 2.30 7.98 -52.48 -0.42 1.88 16 20 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 21 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 22 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 26 C -0.11 -1.99 9.69 -39.61 -0.38 -2.38 16 27 C -0.11 -1.95 8.65 -39.38 -0.34 -2.29 16 28 C 0.04 0.29 7.50 37.73 0.28 0.57 16 29 O -0.37 -3.22 11.23 -35.23 -0.40 -3.61 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.10 0.39 8.06 -51.93 -0.42 -0.03 16 34 H 0.09 0.36 7.98 -51.93 -0.41 -0.05 16 35 H 0.42 3.02 8.03 -40.82 -0.33 2.69 16 36 H 0.42 4.32 8.30 -40.82 -0.34 3.98 16 37 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.13 2.14 8.06 -52.48 -0.42 1.72 16 39 H 0.02 0.56 7.52 -51.93 -0.39 0.17 16 40 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 43 H 0.13 2.05 6.42 -52.48 -0.34 1.71 16 44 H 0.07 0.57 7.93 -51.93 -0.41 0.15 16 45 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 379.08 15.07 5.71 5.71 Total: -1.00 -33.32 379.08 -8.23 -41.55 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.37 Total: 4.64 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -3.12 Total: -10.43 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.46 Total: -40.67 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.23 Total: -17.26 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.32 -8.23 -41.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001516291010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.192 kcal (2) G-P(sol) polarization free energy of solvation -33.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.30 seconds