Wall clock time and date at job start Tue Mar 31 2020 17:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.55197 * 2 1 4 4 C 1.55343 * 110.58176 * 123.05601 * 2 1 3 5 5 C 1.54814 * 101.92866 * 155.54486 * 4 2 1 6 6 H 1.09005 * 110.48623 * 220.33885 * 5 4 2 7 7 N 1.46494 * 110.48963 * 97.82443 * 5 4 2 8 8 C 1.34774 * 120.00442 * 156.84802 * 7 5 4 9 9 O 1.21365 * 119.99677 * 359.97438 * 8 7 5 10 10 C 1.49350 * 120.00258 * 180.02562 * 8 7 5 11 11 O 1.21377 * 120.00068 * 359.97438 * 10 8 7 12 12 N 1.34781 * 119.99986 * 179.97438 * 10 8 7 13 13 C 1.39723 * 119.99665 * 185.27021 * 12 10 8 14 14 C 1.38933 * 120.07585 * 213.33074 * 13 12 10 15 15 C 1.38091 * 119.92164 * 180.02562 * 14 13 12 16 16 C 1.38288 * 120.08298 * 0.02562 * 15 14 13 17 17 C 1.50698 * 119.93060 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.47267 * 89.99956 * 17 16 15 19 19 H 1.08005 * 119.99598 * 359.97438 * 18 17 16 20 20 C 1.37871 * 119.99945 * 179.73034 * 18 17 16 21 21 N 1.31516 * 119.99973 * 180.27639 * 20 18 17 22 22 Si 1.86802 * 120.00257 * 0.27175 * 20 18 17 23 23 H 1.48491 * 109.46897 * 90.00204 * 22 20 18 24 24 H 1.48503 * 109.47250 * 210.00368 * 22 20 18 25 25 H 1.48500 * 109.46884 * 330.00060 * 22 20 18 26 26 C 1.38304 * 120.14642 * 0.25434 * 16 15 14 27 27 C 1.38092 * 120.07501 * 359.45066 * 26 16 15 28 28 C 1.54100 * 104.30487 * 339.08014 * 5 4 2 29 29 O 1.43744 * 107.29682 * 358.03339 * 28 5 4 30 30 H 1.09001 * 109.47570 * 181.42209 * 1 2 3 31 31 H 1.08999 * 109.47158 * 301.42291 * 1 2 3 32 32 H 1.09003 * 109.47175 * 61.42402 * 1 2 3 33 33 H 1.08996 * 110.95871 * 37.41682 * 4 2 1 34 34 H 1.08992 * 111.00826 * 273.69662 * 4 2 1 35 35 H 0.97000 * 119.99820 * 336.84233 * 7 5 4 36 36 H 0.96998 * 119.99904 * 5.28045 * 12 10 8 37 37 H 1.07998 * 120.03557 * 359.97438 * 14 13 12 38 38 H 1.08006 * 119.95937 * 179.97438 * 15 14 13 39 39 H 1.09004 * 109.46642 * 330.00041 * 17 16 15 40 40 H 1.09002 * 109.47168 * 210.00087 * 17 16 15 41 41 H 0.96995 * 120.00229 * 179.97438 * 21 20 18 42 42 H 1.08004 * 119.95586 * 179.72597 * 26 16 15 43 43 H 1.08004 * 120.03796 * 180.25250 * 27 26 16 44 44 H 1.09001 * 109.87888 * 117.46011 * 28 5 4 45 45 H 1.09002 * 109.87909 * 238.46352 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0761 -0.7932 1.2189 5 6 3.4794 -1.2178 0.7217 6 1 3.6997 -2.2403 1.0286 7 7 4.5025 -0.3000 1.2287 8 6 5.7836 -0.7067 1.3272 9 8 6.0896 -1.8336 0.9964 10 6 6.8265 0.2289 1.8446 11 8 6.5203 1.3557 2.1760 12 7 8.1075 -0.1781 1.9437 13 6 9.0625 0.6569 2.5294 14 6 10.3745 0.6419 2.0727 15 6 11.3158 1.4681 2.6542 16 6 10.9540 2.3095 3.6904 17 6 11.9842 3.2093 4.3229 18 6 12.0128 4.5290 3.5959 19 1 11.3514 4.6989 2.7591 20 6 12.8797 5.5212 4.0020 21 7 12.9008 6.6748 3.3709 22 14 14.0241 5.2269 5.4488 23 1 15.3034 4.6536 4.9593 24 1 14.2907 6.5146 6.1389 25 1 13.3879 4.2789 6.3983 26 6 9.6501 2.3228 4.1513 27 6 8.7023 1.5036 3.5703 28 6 3.3839 -1.1242 -0.8135 29 8 2.0384 -0.7336 -1.1349 30 1 -0.3634 -1.0273 0.0255 31 1 -0.3633 0.5358 0.8769 32 1 -0.3634 0.4916 -0.9025 33 1 1.4564 -1.6657 1.4256 34 1 2.1521 -0.1544 2.0986 35 1 4.2578 0.6005 1.4934 36 1 8.3665 -1.0506 1.6082 37 1 10.6580 -0.0158 1.2644 38 1 12.3360 1.4566 2.2999 39 1 12.9653 2.7385 4.2602 40 1 11.7275 3.3763 5.3690 41 1 13.5104 7.3730 3.6569 42 1 9.3720 2.9779 4.9637 43 1 7.6834 1.5175 3.9281 44 1 4.0853 -0.3764 -1.1836 45 1 3.6070 -2.0939 -1.2586 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001516291010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:32 Heat of formation + Delta-G solvation = -111.291283 kcal Electronic energy + Delta-G solvation = -27097.869515 eV Core-core repulsion = 23079.327219 eV Total energy + Delta-G solvation = -4018.542297 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.25779 -41.06248 -40.05815 -39.24032 -36.74744 -35.77515 -34.91316 -33.07269 -32.64667 -31.85577 -31.30438 -29.13046 -27.09285 -26.39028 -24.47615 -23.92323 -22.70598 -22.22578 -21.90760 -21.39332 -19.97265 -18.95889 -18.63478 -18.01131 -17.47005 -17.25254 -16.73889 -16.63708 -16.33699 -16.10285 -15.96300 -15.84139 -15.37410 -15.04154 -14.79877 -14.39302 -14.33344 -14.05313 -13.95457 -13.63903 -13.54785 -13.33988 -13.25526 -13.03122 -12.91996 -12.67159 -12.47341 -12.26931 -12.24998 -11.91836 -11.78554 -11.76838 -11.58203 -11.20867 -10.83540 -10.77225 -10.74448 -10.47920 -9.82210 -8.95807 -8.28455 -6.33940 -0.08378 0.51805 0.60952 1.09248 1.38162 1.40267 1.52093 1.95621 2.36703 2.40362 2.83843 2.91463 3.05800 3.20248 3.37143 3.65239 3.83968 3.98824 4.06521 4.07928 4.14228 4.28032 4.39569 4.50476 4.54652 4.60419 4.61094 4.62625 4.69957 4.84149 4.91476 5.01496 5.05477 5.07438 5.11599 5.21140 5.27253 5.29295 5.31336 5.50709 5.58058 5.77701 5.84928 5.97204 6.07806 6.19074 6.28431 6.57621 6.72697 6.76600 7.29447 8.88088 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.024741 B = 0.001934 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.440807 B =14471.125092 C =15033.255230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.059 3.941 3 H 0.073 0.927 4 C -0.147 4.147 5 C 0.109 3.891 6 H 0.113 0.887 7 N -0.681 5.681 8 C 0.523 3.477 9 O -0.529 6.529 10 C 0.502 3.498 11 O -0.523 6.523 12 N -0.627 5.627 13 C 0.110 3.890 14 C -0.125 4.125 15 C -0.111 4.111 16 C -0.068 4.068 17 C 0.020 3.980 18 C -0.520 4.520 19 H 0.025 0.975 20 C 0.005 3.995 21 N -0.950 5.950 22 Si 0.953 3.047 23 H -0.263 1.263 24 H -0.285 1.285 25 H -0.244 1.244 26 C -0.117 4.117 27 C -0.120 4.120 28 C 0.037 3.963 29 O -0.391 6.391 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.421 0.579 36 H 0.432 0.568 37 H 0.157 0.843 38 H 0.133 0.867 39 H 0.036 0.964 40 H 0.032 0.968 41 H 0.267 0.733 42 H 0.121 0.879 43 H 0.131 0.869 44 H 0.055 0.945 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.425 -20.751 -3.448 30.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.002 3.998 3 H 0.091 0.909 4 C -0.185 4.185 5 C 0.005 3.995 6 H 0.131 0.869 7 N -0.335 5.335 8 C 0.303 3.697 9 O -0.405 6.405 10 C 0.284 3.716 11 O -0.399 6.399 12 N -0.274 5.274 13 C 0.017 3.983 14 C -0.145 4.145 15 C -0.130 4.130 16 C -0.069 4.069 17 C -0.017 4.017 18 C -0.558 4.558 19 H 0.044 0.956 20 C -0.192 4.192 21 N -0.591 5.591 22 Si 0.776 3.224 23 H -0.188 1.188 24 H -0.211 1.211 25 H -0.167 1.167 26 C -0.135 4.135 27 C -0.140 4.140 28 C -0.041 4.041 29 O -0.310 6.310 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.259 0.741 36 H 0.272 0.728 37 H 0.175 0.825 38 H 0.151 0.849 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.139 0.861 43 H 0.149 0.851 44 H 0.073 0.927 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -22.544 -20.685 -3.666 30.815 hybrid contribution 0.886 0.833 0.342 1.263 sum -21.658 -19.852 -3.325 29.567 Atomic orbital electron populations 1.21793 0.91656 1.03423 1.03325 1.23480 0.96583 0.95390 0.84333 0.90900 1.23581 0.93035 1.02756 0.99148 1.22567 0.87918 0.95355 0.93668 0.86896 1.45842 1.06005 1.18265 1.63436 1.19677 0.84070 0.86803 0.79116 1.90785 1.81257 1.19947 1.48531 1.20450 0.84123 0.87460 0.79549 1.90827 1.81144 1.20161 1.47730 1.42953 1.06361 1.20519 1.57563 1.17607 0.89178 0.96324 0.95161 1.21068 0.91182 1.01309 1.00924 1.21046 1.00436 0.95678 0.95826 1.20258 0.95261 0.95023 0.96344 1.18672 0.94286 0.92769 0.95982 1.21170 1.20976 0.98198 1.15426 0.95638 1.26028 0.98868 0.94370 0.99929 1.70068 1.39554 1.06122 1.43308 0.85614 0.79231 0.78139 0.79423 1.18819 1.21080 1.16747 1.21003 0.92507 0.99011 1.01005 1.21036 0.99824 0.97518 0.95585 1.23630 0.84517 1.01515 0.94456 1.88924 1.27726 1.74050 1.40326 0.91446 0.89139 0.92303 0.87067 0.87495 0.74117 0.72847 0.82519 0.84886 0.94599 0.95016 0.92408 0.86082 0.85114 0.92662 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.66 71.98 0.70 -0.44 16 2 C 0.06 0.63 3.98 31.40 0.13 0.75 16 3 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 4 C -0.15 -1.09 6.24 32.02 0.20 -0.89 16 5 C 0.11 1.28 3.36 45.98 0.15 1.43 16 6 H 0.11 1.36 7.61 -2.38 -0.02 1.34 16 7 N -0.68 -9.82 4.99 -439.27 -2.19 -12.01 16 8 C 0.52 10.22 7.89 87.24 0.69 10.90 16 9 O -0.53 -11.68 16.16 -3.29 -0.05 -11.73 16 10 C 0.50 12.04 7.62 87.24 0.66 12.71 16 11 O -0.52 -15.40 14.16 -3.33 -0.05 -15.44 16 12 N -0.63 -14.57 5.32 -304.83 -1.62 -16.19 16 13 C 0.11 3.26 6.28 38.22 0.24 3.50 16 14 C -0.13 -3.60 9.96 22.40 0.22 -3.38 16 15 C -0.11 -3.93 9.69 22.25 0.22 -3.71 16 16 C -0.07 -2.82 5.07 -19.84 -0.10 -2.92 16 17 C 0.02 0.94 4.17 29.10 0.12 1.06 16 18 C -0.52 -30.18 9.65 25.60 0.25 -29.94 16 19 H 0.03 1.67 7.98 -2.91 -0.02 1.65 16 20 C 0.00 0.28 5.47 84.65 0.46 0.75 16 21 N -0.95 -59.86 13.96 21.45 0.30 -59.56 16 22 Si 0.95 43.59 27.47 68.60 1.88 45.48 16 23 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 25 H -0.24 -10.27 6.54 99.48 0.65 -9.62 16 26 C -0.12 -4.48 9.69 22.25 0.22 -4.26 16 27 C -0.12 -4.03 8.65 22.40 0.19 -3.84 16 28 C 0.04 0.53 7.50 72.35 0.54 1.07 16 29 O -0.39 -6.41 11.23 -148.98 -1.67 -8.08 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.11 0.56 8.06 -2.39 -0.02 0.54 16 34 H 0.11 0.52 7.98 -2.39 -0.02 0.50 16 35 H 0.42 5.38 8.03 -92.71 -0.74 4.64 16 36 H 0.43 7.73 8.30 -92.71 -0.77 6.96 16 37 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 38 H 0.13 4.40 8.06 -2.91 -0.02 4.37 16 39 H 0.04 1.58 7.52 -2.38 -0.02 1.57 16 40 H 0.03 1.45 7.13 -2.39 -0.02 1.43 16 41 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 42 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 43 H 0.13 4.21 6.42 -2.91 -0.02 4.19 16 44 H 0.06 0.91 7.93 -2.39 -0.02 0.89 16 45 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -74.00 379.08 0.95 -73.05 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: -0.54 Total: 21.67 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: 4.89 Total: -17.19 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -3.52 Total: -87.76 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -1.77 Total: -35.26 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.48 kcal Total: -74.00 0.95 -73.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001516291010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.239 kcal (2) G-P(sol) polarization free energy of solvation -73.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds