Wall clock time and date at job start Tue Mar 31 2020 17:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 110.32726 * 2 1 4 4 C 1.54478 * 110.37263 * 237.75221 * 2 1 3 5 5 C 1.54513 * 104.06128 * 217.07605 * 4 2 1 6 6 H 1.08995 * 110.50939 * 241.35792 * 5 4 2 7 7 N 1.46495 * 110.50998 * 118.64336 * 5 4 2 8 8 C 1.34774 * 119.99633 * 155.00299 * 7 5 4 9 9 O 1.21357 * 120.00763 * 359.97438 * 8 7 5 10 10 C 1.49360 * 120.00107 * 180.02562 * 8 7 5 11 11 O 1.21378 * 119.99498 * 359.97438 * 10 8 7 12 12 N 1.34776 * 120.00516 * 180.02562 * 10 8 7 13 13 C 1.39713 * 120.00078 * 175.37887 * 12 10 8 14 14 C 1.38935 * 120.07488 * 214.81376 * 13 12 10 15 15 C 1.38095 * 119.92414 * 179.76818 * 14 13 12 16 16 C 1.38293 * 120.07503 * 0.50883 * 15 14 13 17 17 C 1.50697 * 119.92644 * 179.72122 * 16 15 14 18 18 C 1.50699 * 109.47345 * 270.03111 * 17 16 15 19 19 H 1.07996 * 119.99934 * 359.97438 * 18 17 16 20 20 C 1.37883 * 120.00033 * 179.97438 * 18 17 16 21 21 N 1.31507 * 119.99961 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99656 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47421 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47041 * 120.00286 * 22 20 18 25 25 H 1.48505 * 109.47025 * 239.99931 * 22 20 18 26 26 C 1.38298 * 120.15469 * 359.74930 * 16 15 14 27 27 C 1.38096 * 120.07261 * 359.97438 * 26 16 15 28 28 C 1.54487 * 104.06152 * 359.97438 * 5 4 2 29 29 O 1.44428 * 110.37332 * 122.24854 * 2 1 3 30 30 H 1.09007 * 109.46996 * 180.70279 * 1 2 3 31 31 H 1.08998 * 109.47432 * 300.69775 * 1 2 3 32 32 H 1.08997 * 109.47700 * 60.69983 * 1 2 3 33 33 H 1.09000 * 110.51184 * 335.71933 * 4 2 1 34 34 H 1.08995 * 110.51238 * 98.43388 * 4 2 1 35 35 H 0.97001 * 120.00422 * 334.99695 * 7 5 4 36 36 H 0.96997 * 119.99364 * 355.37223 * 12 10 8 37 37 H 1.08004 * 120.03773 * 0.03223 * 14 13 12 38 38 H 1.08001 * 119.96233 * 180.28204 * 15 14 13 39 39 H 1.09010 * 109.46938 * 30.02315 * 17 16 15 40 40 H 1.08999 * 109.47804 * 150.02364 * 17 16 15 41 41 H 0.97006 * 120.00085 * 179.97438 * 21 20 18 42 42 H 1.07994 * 119.96332 * 179.97438 * 26 16 15 43 43 H 1.08003 * 120.03627 * 179.97438 * 27 26 16 44 44 H 1.09000 * 110.37098 * 142.81420 * 28 5 4 45 45 H 1.09001 * 110.37077 * 265.14614 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0677 -0.7727 -1.2248 5 6 3.3194 -1.5026 -0.6882 6 1 4.2115 -1.1725 -1.2205 7 7 3.1573 -2.9538 -0.8058 8 6 4.2426 -3.7487 -0.8861 9 8 5.3543 -3.2625 -0.8613 10 6 4.0774 -5.2283 -1.0066 11 8 2.9656 -5.7146 -1.0318 12 7 5.1627 -6.0234 -1.0863 13 6 5.0117 -7.4122 -1.1017 14 6 5.9573 -8.2223 -0.4854 15 6 5.8024 -9.5945 -0.4984 16 6 4.7130 -10.1630 -1.1328 17 6 4.5506 -11.6611 -1.1503 18 6 5.2370 -12.2267 -2.3669 19 1 5.7401 -11.5672 -3.0585 20 6 5.2226 -13.5861 -2.5970 21 7 4.6104 -14.3891 -1.7545 22 14 6.0728 -14.2870 -4.1053 23 1 6.6823 -13.1821 -4.8883 24 1 7.1326 -15.2362 -3.6799 25 1 5.0788 -14.9999 -4.9474 26 6 3.7726 -9.3599 -1.7519 27 6 3.9183 -7.9867 -1.7378 28 6 3.3902 -1.0839 0.7972 29 8 2.0328 -0.7225 1.1451 30 1 -0.3633 -1.0277 0.0126 31 1 -0.3634 0.5246 0.8836 32 1 -0.3634 0.5029 -0.8961 33 1 1.3283 -1.4917 -1.5776 34 1 2.3411 -0.0819 -2.0223 35 1 2.2688 -3.3425 -0.8259 36 1 6.0487 -5.6313 -1.1331 37 1 6.8104 -7.7792 0.0069 38 1 6.5348 -10.2246 -0.0156 39 1 4.9972 -12.0855 -0.2510 40 1 3.4902 -11.9113 -1.1821 41 1 4.5999 -15.3455 -1.9166 42 1 2.9233 -9.8071 -2.2468 43 1 3.1837 -7.3601 -2.2218 44 1 3.7289 -1.9186 1.4109 45 1 4.0542 -0.2282 0.9190 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001516291012.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:50 Heat of formation + Delta-G solvation = -91.795126 kcal Electronic energy + Delta-G solvation = -27058.306246 eV Core-core repulsion = 23040.609366 eV Total energy + Delta-G solvation = -4017.696880 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 3.70 seconds Orbital eigenvalues (eV) -41.26059 -40.20919 -39.04681 -38.00631 -35.59763 -34.70738 -33.04375 -32.64062 -30.78629 -30.54126 -30.36153 -27.16058 -26.53055 -25.16267 -23.21530 -22.47645 -22.01342 -21.55989 -20.74146 -20.13163 -18.94758 -17.53425 -17.18933 -16.57154 -16.40174 -16.31146 -16.06562 -16.02284 -15.14678 -14.94621 -14.58050 -14.31647 -14.21352 -13.86731 -13.63517 -13.15684 -13.08446 -12.92990 -12.91545 -12.63593 -12.31961 -12.12310 -12.04013 -12.01616 -11.77252 -11.43791 -11.39689 -11.31040 -10.87172 -10.60230 -10.46943 -10.42662 -10.09588 -9.83045 -9.61350 -9.46044 -9.32012 -8.44597 -8.36457 -7.51273 -6.05556 -4.09674 1.01715 1.89304 1.98441 2.12365 2.97641 3.28511 3.34988 3.35407 3.36306 3.41185 3.87193 4.13847 4.18818 4.34863 4.40460 4.45143 4.51668 4.71108 4.80434 4.94923 5.08794 5.17769 5.23145 5.28509 5.34244 5.36715 5.46324 5.48754 5.64895 5.77568 5.79742 5.94221 6.00474 6.12582 6.28776 6.51956 6.57764 6.73138 6.79448 7.09579 7.13337 7.22527 7.44915 7.48904 7.61916 7.81891 7.84008 7.90242 8.29839 8.95893 9.54296 11.04106 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030084 B = 0.001845 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.516403 B =15170.552431 C =15417.680216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.068 3.932 3 H 0.073 0.927 4 C -0.159 4.159 5 C 0.110 3.890 6 H 0.111 0.889 7 N -0.691 5.691 8 C 0.514 3.486 9 O -0.519 6.519 10 C 0.501 3.499 11 O -0.501 6.501 12 N -0.633 5.633 13 C 0.092 3.908 14 C -0.134 4.134 15 C -0.109 4.109 16 C -0.036 4.036 17 C 0.046 3.954 18 C -0.511 4.511 19 H 0.058 0.942 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.895 3.105 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.283 1.283 26 C -0.110 4.110 27 C -0.113 4.113 28 C 0.035 3.965 29 O -0.368 6.368 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.416 0.584 36 H 0.418 0.582 37 H 0.117 0.883 38 H 0.125 0.875 39 H 0.030 0.970 40 H 0.030 0.970 41 H 0.262 0.738 42 H 0.124 0.876 43 H 0.129 0.871 44 H 0.097 0.903 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.103 30.171 2.577 30.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.010 3.990 3 H 0.091 0.909 4 C -0.197 4.197 5 C 0.005 3.995 6 H 0.129 0.871 7 N -0.346 5.346 8 C 0.294 3.706 9 O -0.394 6.394 10 C 0.282 3.718 11 O -0.376 6.376 12 N -0.278 5.278 13 C 0.000 4.000 14 C -0.154 4.154 15 C -0.127 4.127 16 C -0.036 4.036 17 C 0.009 3.991 18 C -0.550 4.550 19 H 0.076 0.924 20 C -0.144 4.144 21 N -0.532 5.532 22 Si 0.723 3.277 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.210 1.210 26 C -0.129 4.129 27 C -0.133 4.133 28 C -0.043 4.043 29 O -0.287 6.287 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.254 0.746 36 H 0.255 0.745 37 H 0.135 0.865 38 H 0.143 0.857 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.071 0.929 42 H 0.141 0.859 43 H 0.147 0.853 44 H 0.115 0.885 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.265 29.992 2.819 30.425 hybrid contribution 0.682 -0.420 -1.025 1.300 sum -3.583 29.573 1.794 29.843 Atomic orbital electron populations 1.21822 0.92753 1.03307 1.02699 1.23032 0.95800 0.95526 0.84607 0.90891 1.23370 0.96884 1.00327 0.99136 1.22471 1.00252 0.79560 0.97248 0.87106 1.45817 1.09872 1.06404 1.72459 1.20154 0.85105 0.87793 0.77511 1.90773 1.24423 1.76032 1.48174 1.20031 0.85400 0.87425 0.78941 1.90795 1.24373 1.75431 1.47001 1.42983 1.09939 1.05085 1.69831 1.17521 0.99128 0.80417 1.02955 1.20799 0.99469 0.93996 1.01134 1.20915 0.98331 0.93113 1.00381 1.20789 0.91949 0.99006 0.91858 1.18385 0.98252 0.84454 0.97985 1.21095 1.34301 0.91859 1.07705 0.92362 1.25018 0.95521 0.97111 0.96727 1.69966 1.43136 1.03831 1.36296 0.86479 0.79325 0.79061 0.82846 1.19669 1.20945 1.20953 1.21025 0.99896 0.92089 0.99848 1.21117 0.97674 0.95300 0.99212 1.23932 0.84901 1.00835 0.94659 1.89273 1.26819 1.74605 1.37972 0.91522 0.91618 0.90948 0.89255 0.88909 0.74633 0.74550 0.86459 0.85729 0.95185 0.95173 0.92876 0.85850 0.85341 0.88461 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.52 37.16 0.35 -0.35 16 2 C 0.07 0.38 3.91 -25.96 -0.10 0.28 16 3 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 4 C -0.16 -0.75 6.39 -25.16 -0.16 -0.91 16 5 C 0.11 0.74 3.48 -66.36 -0.23 0.51 16 6 H 0.11 0.75 7.56 -51.93 -0.39 0.36 16 7 N -0.69 -5.89 5.08 -52.75 -0.27 -6.15 16 8 C 0.51 5.64 7.89 -11.63 -0.09 5.55 16 9 O -0.52 -6.39 16.13 5.49 0.09 -6.30 16 10 C 0.50 6.56 7.73 -11.63 -0.09 6.47 16 11 O -0.50 -7.64 13.91 5.47 0.08 -7.57 16 12 N -0.63 -8.35 5.32 -10.29 -0.05 -8.41 16 13 C 0.09 1.49 6.30 -83.75 -0.53 0.96 16 14 C -0.13 -2.16 9.97 -39.38 -0.39 -2.55 16 15 C -0.11 -2.05 9.69 -39.61 -0.38 -2.44 16 16 C -0.04 -0.76 5.07 -104.58 -0.53 -1.29 16 17 C 0.05 1.17 5.10 -29.04 -0.15 1.02 16 18 C -0.51 -14.16 9.09 -34.44 -0.31 -14.47 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 22 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C -0.11 -2.18 9.69 -39.61 -0.38 -2.56 16 27 C -0.11 -2.02 8.69 -39.38 -0.34 -2.36 16 28 C 0.03 0.25 7.36 37.94 0.28 0.53 16 29 O -0.37 -3.13 11.37 -35.23 -0.40 -3.53 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.09 0.41 7.43 -51.93 -0.39 0.03 16 34 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.42 3.33 7.85 -40.82 -0.32 3.01 16 36 H 0.42 4.59 8.30 -40.82 -0.34 4.25 16 37 H 0.12 1.53 8.06 -52.48 -0.42 1.10 16 38 H 0.12 2.25 8.06 -52.49 -0.42 1.82 16 39 H 0.03 0.79 8.08 -51.92 -0.42 0.37 16 40 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.12 2.38 8.06 -52.49 -0.42 1.95 16 43 H 0.13 2.21 6.23 -52.48 -0.33 1.88 16 44 H 0.10 0.82 8.06 -51.93 -0.42 0.40 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 381.95 15.07 5.76 5.76 Total: -1.00 -32.33 381.95 -8.62 -40.95 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.37 Total: 4.47 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -3.16 Total: -10.10 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.41 Total: -40.04 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.24 Total: -17.40 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.33 -8.62 -40.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001516291012.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.848 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.71 seconds