Wall clock time and date at job start Tue Mar 31 2020 17:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 110.32726 * 2 1 4 4 C 1.54478 * 110.37263 * 237.75221 * 2 1 3 5 5 C 1.54513 * 104.06128 * 217.07605 * 4 2 1 6 6 H 1.08995 * 110.50939 * 241.35792 * 5 4 2 7 7 N 1.46495 * 110.50998 * 118.64336 * 5 4 2 8 8 C 1.34774 * 119.99633 * 155.00299 * 7 5 4 9 9 O 1.21357 * 120.00763 * 359.97438 * 8 7 5 10 10 C 1.49360 * 120.00107 * 180.02562 * 8 7 5 11 11 O 1.21378 * 119.99498 * 359.97438 * 10 8 7 12 12 N 1.34776 * 120.00516 * 180.02562 * 10 8 7 13 13 C 1.39713 * 120.00078 * 175.37887 * 12 10 8 14 14 C 1.38935 * 120.07488 * 214.81376 * 13 12 10 15 15 C 1.38095 * 119.92414 * 179.76818 * 14 13 12 16 16 C 1.38293 * 120.07503 * 0.50883 * 15 14 13 17 17 C 1.50697 * 119.92644 * 179.72122 * 16 15 14 18 18 C 1.50699 * 109.47345 * 270.03111 * 17 16 15 19 19 H 1.07996 * 119.99934 * 359.97438 * 18 17 16 20 20 C 1.37883 * 120.00033 * 179.97438 * 18 17 16 21 21 N 1.31507 * 119.99961 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99656 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47421 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47041 * 120.00286 * 22 20 18 25 25 H 1.48505 * 109.47025 * 239.99931 * 22 20 18 26 26 C 1.38298 * 120.15469 * 359.74930 * 16 15 14 27 27 C 1.38096 * 120.07261 * 359.97438 * 26 16 15 28 28 C 1.54487 * 104.06152 * 359.97438 * 5 4 2 29 29 O 1.44428 * 110.37332 * 122.24854 * 2 1 3 30 30 H 1.09007 * 109.46996 * 180.70279 * 1 2 3 31 31 H 1.08998 * 109.47432 * 300.69775 * 1 2 3 32 32 H 1.08997 * 109.47700 * 60.69983 * 1 2 3 33 33 H 1.09000 * 110.51184 * 335.71933 * 4 2 1 34 34 H 1.08995 * 110.51238 * 98.43388 * 4 2 1 35 35 H 0.97001 * 120.00422 * 334.99695 * 7 5 4 36 36 H 0.96997 * 119.99364 * 355.37223 * 12 10 8 37 37 H 1.08004 * 120.03773 * 0.03223 * 14 13 12 38 38 H 1.08001 * 119.96233 * 180.28204 * 15 14 13 39 39 H 1.09010 * 109.46938 * 30.02315 * 17 16 15 40 40 H 1.08999 * 109.47804 * 150.02364 * 17 16 15 41 41 H 0.97006 * 120.00085 * 179.97438 * 21 20 18 42 42 H 1.07994 * 119.96332 * 179.97438 * 26 16 15 43 43 H 1.08003 * 120.03627 * 179.97438 * 27 26 16 44 44 H 1.09000 * 110.37098 * 142.81420 * 28 5 4 45 45 H 1.09001 * 110.37077 * 265.14614 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0677 -0.7727 -1.2248 5 6 3.3194 -1.5026 -0.6882 6 1 4.2115 -1.1725 -1.2205 7 7 3.1573 -2.9538 -0.8058 8 6 4.2426 -3.7487 -0.8861 9 8 5.3543 -3.2625 -0.8613 10 6 4.0774 -5.2283 -1.0066 11 8 2.9656 -5.7146 -1.0318 12 7 5.1627 -6.0234 -1.0863 13 6 5.0117 -7.4122 -1.1017 14 6 5.9573 -8.2223 -0.4854 15 6 5.8024 -9.5945 -0.4984 16 6 4.7130 -10.1630 -1.1328 17 6 4.5506 -11.6611 -1.1503 18 6 5.2370 -12.2267 -2.3669 19 1 5.7401 -11.5672 -3.0585 20 6 5.2226 -13.5861 -2.5970 21 7 4.6104 -14.3891 -1.7545 22 14 6.0728 -14.2870 -4.1053 23 1 6.6823 -13.1821 -4.8883 24 1 7.1326 -15.2362 -3.6799 25 1 5.0788 -14.9999 -4.9474 26 6 3.7726 -9.3599 -1.7519 27 6 3.9183 -7.9867 -1.7378 28 6 3.3902 -1.0839 0.7972 29 8 2.0328 -0.7225 1.1451 30 1 -0.3633 -1.0277 0.0126 31 1 -0.3634 0.5246 0.8836 32 1 -0.3634 0.5029 -0.8961 33 1 1.3283 -1.4917 -1.5776 34 1 2.3411 -0.0819 -2.0223 35 1 2.2688 -3.3425 -0.8259 36 1 6.0487 -5.6313 -1.1331 37 1 6.8104 -7.7792 0.0069 38 1 6.5348 -10.2246 -0.0156 39 1 4.9972 -12.0855 -0.2510 40 1 3.4902 -11.9113 -1.1821 41 1 4.5999 -15.3455 -1.9166 42 1 2.9233 -9.8071 -2.2468 43 1 3.1837 -7.3601 -2.2218 44 1 3.7289 -1.9186 1.4109 45 1 4.0542 -0.2282 0.9190 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001516291012.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:44 Heat of formation + Delta-G solvation = -113.669714 kcal Electronic energy + Delta-G solvation = -27059.254799 eV Core-core repulsion = 23040.609366 eV Total energy + Delta-G solvation = -4018.645433 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 5.52 seconds Orbital eigenvalues (eV) -42.22652 -41.02294 -40.02739 -39.20885 -36.70750 -35.71716 -34.95583 -33.08480 -32.32154 -31.83583 -31.28049 -28.80170 -27.00332 -26.41989 -24.80297 -23.89607 -22.83617 -22.09533 -21.90201 -21.30972 -19.93964 -18.57113 -18.49224 -17.96529 -17.42173 -17.14447 -16.99429 -16.79408 -16.57649 -16.01648 -15.95903 -15.66742 -15.09272 -14.92770 -14.61265 -14.52220 -14.32735 -14.15036 -13.72344 -13.54741 -13.33854 -13.29860 -13.20814 -12.93416 -12.78015 -12.63777 -12.54607 -12.45031 -12.33971 -12.04763 -11.81031 -11.65050 -11.52519 -11.12576 -11.00478 -10.74822 -10.60258 -10.27392 -9.80714 -9.00124 -8.18730 -6.32579 -0.04366 0.53293 0.61174 1.13261 1.40240 1.40966 1.54297 1.97915 2.40342 2.44919 2.88846 2.94312 3.11469 3.22714 3.42848 3.69717 3.97208 4.01451 4.02595 4.10438 4.24462 4.35624 4.41320 4.48698 4.52407 4.58066 4.63272 4.66549 4.71699 4.84094 4.91944 5.06881 5.09257 5.15436 5.25344 5.27949 5.29438 5.37698 5.38501 5.54204 5.74396 5.76557 5.88790 6.05492 6.07648 6.20431 6.22483 6.59510 6.78685 6.80446 7.35964 8.89967 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.030084 B = 0.001845 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.516403 B =15170.552431 C =15417.680216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 H 0.088 0.912 4 C -0.151 4.151 5 C 0.107 3.893 6 H 0.116 0.884 7 N -0.680 5.680 8 C 0.522 3.478 9 O -0.531 6.531 10 C 0.502 3.498 11 O -0.523 6.523 12 N -0.626 5.626 13 C 0.106 3.894 14 C -0.121 4.121 15 C -0.114 4.114 16 C -0.068 4.068 17 C 0.055 3.945 18 C -0.526 4.526 19 H 0.056 0.944 20 C 0.003 3.997 21 N -0.930 5.930 22 Si 0.966 3.034 23 H -0.265 1.265 24 H -0.276 1.276 25 H -0.278 1.278 26 C -0.120 4.120 27 C -0.116 4.116 28 C 0.034 3.966 29 O -0.394 6.394 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.116 0.884 35 H 0.419 0.581 36 H 0.431 0.569 37 H 0.158 0.842 38 H 0.129 0.871 39 H 0.008 0.992 40 H 0.002 0.998 41 H 0.265 0.735 42 H 0.116 0.884 43 H 0.135 0.865 44 H 0.082 0.918 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.061 32.954 1.584 33.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.005 3.995 3 H 0.106 0.894 4 C -0.189 4.189 5 C 0.003 3.997 6 H 0.134 0.866 7 N -0.333 5.333 8 C 0.302 3.698 9 O -0.408 6.408 10 C 0.284 3.716 11 O -0.399 6.399 12 N -0.273 5.273 13 C 0.013 3.987 14 C -0.140 4.140 15 C -0.132 4.132 16 C -0.068 4.068 17 C 0.018 3.982 18 C -0.564 4.564 19 H 0.074 0.926 20 C -0.195 4.195 21 N -0.570 5.570 22 Si 0.790 3.210 23 H -0.189 1.189 24 H -0.201 1.201 25 H -0.204 1.204 26 C -0.138 4.138 27 C -0.136 4.136 28 C -0.044 4.044 29 O -0.314 6.314 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.134 0.866 35 H 0.257 0.743 36 H 0.271 0.729 37 H 0.175 0.825 38 H 0.146 0.854 39 H 0.026 0.974 40 H 0.021 0.979 41 H 0.074 0.926 42 H 0.134 0.866 43 H 0.153 0.847 44 H 0.100 0.900 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.228 32.823 1.828 33.032 hybrid contribution 0.287 -1.131 -0.649 1.336 sum -2.941 31.692 1.180 31.850 Atomic orbital electron populations 1.21849 0.92402 1.02870 1.03449 1.23246 0.96163 0.96070 0.83988 0.89450 1.23381 0.95788 1.00428 0.99307 1.22661 1.01576 0.78235 0.97223 0.86580 1.45875 1.09338 1.07171 1.70904 1.19678 0.85494 0.86691 0.77943 1.90777 1.24868 1.75797 1.49320 1.20463 0.84833 0.88452 0.77823 1.90793 1.25271 1.76086 1.47755 1.42916 1.10927 1.03768 1.69694 1.17586 0.98030 0.81984 1.01070 1.21065 1.00308 0.92607 1.00047 1.20989 0.97501 0.94657 1.00065 1.20483 0.94406 0.96739 0.95193 1.18122 0.95969 0.87665 0.96426 1.21413 1.34332 0.92315 1.08376 0.92566 1.25931 0.96161 0.97512 0.99875 1.70087 1.44433 1.04238 1.38255 0.85382 0.78288 0.78357 0.78934 1.18869 1.20127 1.20370 1.20967 0.99582 0.93073 1.00202 1.21156 0.98597 0.94296 0.99571 1.23951 0.84893 1.00993 0.94570 1.89253 1.27384 1.75189 1.39542 0.92503 0.92138 0.89000 0.89069 0.86588 0.74304 0.72913 0.82462 0.85353 0.97383 0.97939 0.92598 0.86596 0.84726 0.90009 0.89157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.52 71.98 0.69 -0.48 16 2 C 0.06 0.56 3.91 31.10 0.12 0.68 16 3 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 4 C -0.15 -1.03 6.39 31.61 0.20 -0.82 16 5 C 0.11 1.20 3.48 46.01 0.16 1.36 16 6 H 0.12 1.25 7.56 -2.39 -0.02 1.23 16 7 N -0.68 -10.31 5.08 -439.15 -2.23 -12.54 16 8 C 0.52 10.41 7.89 87.24 0.69 11.10 16 9 O -0.53 -11.84 16.13 -3.27 -0.05 -11.89 16 10 C 0.50 12.21 7.73 87.24 0.67 12.88 16 11 O -0.52 -15.27 13.91 -3.34 -0.05 -15.32 16 12 N -0.63 -14.99 5.32 -304.83 -1.62 -16.61 16 13 C 0.11 3.24 6.30 38.22 0.24 3.48 16 14 C -0.12 -3.61 9.97 22.40 0.22 -3.38 16 15 C -0.11 -4.25 9.69 22.25 0.22 -4.03 16 16 C -0.07 -3.00 5.07 -19.84 -0.10 -3.10 16 17 C 0.06 2.96 5.10 29.10 0.15 3.11 16 18 C -0.53 -30.01 9.09 25.60 0.23 -29.78 16 19 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 20 C 0.00 0.19 5.46 84.66 0.46 0.65 16 21 N -0.93 -56.10 13.29 21.45 0.28 -55.82 16 22 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 23 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 26 C -0.12 -4.86 9.69 22.25 0.22 -4.65 16 27 C -0.12 -4.08 8.69 22.40 0.19 -3.89 16 28 C 0.03 0.44 7.36 72.49 0.53 0.97 16 29 O -0.39 -6.22 11.37 -148.98 -1.69 -7.91 16 30 H 0.06 0.55 8.14 -2.38 -0.02 0.54 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 32 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.09 0.62 7.43 -2.39 -0.02 0.60 16 34 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.42 6.05 7.85 -92.71 -0.73 5.32 16 36 H 0.43 8.14 8.30 -92.71 -0.77 7.38 16 37 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 38 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 39 H 0.01 0.45 8.08 -2.38 -0.02 0.43 16 40 H 0.00 0.13 8.08 -2.39 -0.02 0.11 16 41 H 0.27 14.95 8.31 -92.70 -0.77 14.18 16 42 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 43 H 0.14 4.54 6.23 -2.91 -0.02 4.52 16 44 H 0.08 1.30 8.06 -2.39 -0.02 1.28 16 45 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -71.08 381.95 1.10 -69.98 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -0.47 Total: 19.69 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: 4.90 Total: -15.89 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -3.57 Total: -84.96 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -1.79 Total: -35.12 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -71.08 1.10 -69.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001516291012.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.689 kcal (2) G-P(sol) polarization free energy of solvation -71.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.52 seconds