Wall clock time and date at job start Tue Mar 31 2020 17:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 110.54866 * 2 1 4 4 C 1.54998 * 110.61712 * 123.04237 * 2 1 3 5 5 C 1.54808 * 102.08951 * 155.52528 * 4 2 1 6 6 H 1.09000 * 110.60116 * 97.85532 * 5 4 2 7 7 N 1.46503 * 110.48937 * 220.44354 * 5 4 2 8 8 C 1.34773 * 120.00383 * 201.22215 * 7 5 4 9 9 O 1.21365 * 119.99899 * 359.97438 * 8 7 5 10 10 C 1.49345 * 120.00213 * 179.97438 * 8 7 5 11 11 O 1.21380 * 120.00226 * 0.02562 * 10 8 7 12 12 N 1.34773 * 120.00213 * 180.02562 * 10 8 7 13 13 C 1.39728 * 120.00202 * 185.27541 * 12 10 8 14 14 C 1.38929 * 120.07811 * 213.34097 * 13 12 10 15 15 C 1.38094 * 119.92447 * 179.97438 * 14 13 12 16 16 C 1.38292 * 120.07621 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.92440 * 180.02562 * 16 15 14 18 18 C 1.50702 * 109.47602 * 90.00000 * 17 16 15 19 19 H 1.08005 * 119.99597 * 0.02562 * 18 17 16 20 20 C 1.37868 * 120.00240 * 179.72740 * 18 17 16 21 21 N 1.31514 * 120.00276 * 0.27223 * 20 18 17 22 22 Si 1.86806 * 119.99997 * 180.27716 * 20 18 17 23 23 H 1.48498 * 109.47258 * 89.99574 * 22 20 18 24 24 H 1.48504 * 109.46831 * 209.99832 * 22 20 18 25 25 H 1.48496 * 109.47163 * 329.99527 * 22 20 18 26 26 C 1.38290 * 120.15218 * 0.27777 * 16 15 14 27 27 C 1.38094 * 120.07484 * 359.49388 * 26 16 15 28 28 C 1.54100 * 104.19151 * 339.12121 * 5 4 2 29 29 O 1.43746 * 107.29012 * 357.97193 * 28 5 4 30 30 H 1.08998 * 109.46917 * 181.42960 * 1 2 3 31 31 H 1.09003 * 109.47273 * 301.42924 * 1 2 3 32 32 H 1.09000 * 109.46848 * 61.42927 * 1 2 3 33 33 H 1.09001 * 110.90645 * 37.33085 * 4 2 1 34 34 H 1.08995 * 110.90828 * 273.72453 * 4 2 1 35 35 H 0.97000 * 119.99691 * 21.22611 * 7 5 4 36 36 H 0.97005 * 119.99969 * 5.27963 * 12 10 8 37 37 H 1.08002 * 120.03715 * 0.02562 * 14 13 12 38 38 H 1.08004 * 119.95941 * 180.02562 * 15 14 13 39 39 H 1.09004 * 109.47132 * 330.00287 * 17 16 15 40 40 H 1.09006 * 109.47279 * 209.99942 * 17 16 15 41 41 H 0.96996 * 120.00360 * 180.02562 * 21 20 18 42 42 H 1.08001 * 119.96620 * 179.72307 * 26 16 15 43 43 H 1.08004 * 120.03867 * 180.25037 * 27 26 16 44 44 H 1.09000 * 109.87869 * 117.39278 * 28 5 4 45 45 H 1.08997 * 109.87866 * 238.39992 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0759 -0.7910 1.2161 5 6 3.4795 -1.2177 0.7219 6 1 4.2423 -0.5364 1.0988 7 7 3.7725 -2.5925 1.1346 8 6 5.0493 -3.0194 1.1981 9 8 5.9563 -2.2652 0.9128 10 6 5.3480 -4.4207 1.6194 11 8 4.4409 -5.1753 1.9043 12 7 6.6247 -4.8476 1.6834 13 6 6.9001 -6.1871 1.9700 14 6 8.0365 -6.5249 2.6942 15 6 8.3053 -7.8497 2.9762 16 6 7.4444 -8.8398 2.5390 17 6 7.7407 -10.2844 2.8491 18 6 7.1012 -10.6580 4.1615 19 1 6.5362 -9.9229 4.7155 20 6 7.2321 -11.9398 4.6520 21 7 7.9196 -12.8352 3.9773 22 14 6.4328 -12.4050 6.2751 23 1 5.0582 -12.9076 6.0239 24 1 7.2348 -13.4659 6.9357 25 1 6.3700 -11.2111 7.1560 26 6 6.3150 -8.5076 1.8134 27 6 6.0377 -7.1844 1.5319 28 6 3.3840 -1.1242 -0.8133 29 8 2.0385 -0.7336 -1.1347 30 1 -0.3633 -1.0273 0.0256 31 1 -0.3634 0.5359 0.8769 32 1 -0.3633 0.4915 -0.9025 33 1 1.4550 -1.6626 1.4236 34 1 2.1509 -0.1505 2.0948 35 1 3.0476 -3.1954 1.3623 36 1 7.3526 -4.2248 1.5304 37 1 8.7086 -5.7521 3.0370 38 1 9.1884 -8.1129 3.5395 39 1 8.8192 -10.4278 2.9167 40 1 7.3392 -10.9160 2.0565 41 1 8.0114 -13.7371 4.3222 42 1 5.6471 -9.2836 1.4696 43 1 5.1533 -6.9253 0.9686 44 1 4.0854 -0.3765 -1.1835 45 1 3.6071 -2.0939 -1.2583 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001516291013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:04 Heat of formation + Delta-G solvation = -91.973579 kcal Electronic energy + Delta-G solvation = -27032.883283 eV Core-core repulsion = 23015.178665 eV Total energy + Delta-G solvation = -4017.704618 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.26950 -40.21488 -39.07826 -38.02396 -35.65825 -34.75719 -33.04250 -32.65285 -30.76634 -30.53686 -30.38033 -27.16301 -26.59378 -25.15480 -23.18442 -22.50877 -21.95019 -21.70723 -20.69652 -20.11307 -18.95563 -17.56308 -17.33549 -16.63522 -16.39220 -16.31039 -16.02902 -15.95772 -15.06941 -14.93172 -14.58127 -14.29672 -14.17533 -14.00740 -13.73188 -13.15628 -13.05410 -13.01311 -12.93318 -12.63418 -12.40131 -12.13541 -12.07280 -12.02127 -11.74159 -11.48223 -11.44917 -11.28040 -10.83538 -10.61395 -10.41102 -10.30694 -10.18843 -9.77394 -9.66790 -9.52979 -9.32552 -8.43733 -8.38381 -7.50672 -6.05057 -4.09112 0.99228 1.88705 1.96631 2.09526 2.96888 3.24648 3.30506 3.36652 3.38298 3.41174 3.83367 4.14373 4.19314 4.34278 4.37324 4.46606 4.51236 4.63850 4.79603 5.01211 5.11044 5.18039 5.23591 5.28686 5.34833 5.35120 5.45391 5.46092 5.63807 5.76684 5.79348 5.92137 5.98388 6.11211 6.34816 6.49799 6.55252 6.70729 6.77055 7.08200 7.12109 7.20546 7.43247 7.47577 7.60536 7.81001 7.82711 7.90692 8.30250 8.96231 9.54923 11.04521 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021991 B = 0.001939 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.965163 B =14440.531292 C =15125.292432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.072 3.928 3 H 0.075 0.925 4 C -0.158 4.158 5 C 0.111 3.889 6 H 0.109 0.891 7 N -0.693 5.693 8 C 0.514 3.486 9 O -0.517 6.517 10 C 0.500 3.500 11 O -0.499 6.499 12 N -0.633 5.633 13 C 0.095 3.905 14 C -0.135 4.135 15 C -0.107 4.107 16 C -0.036 4.036 17 C 0.047 3.953 18 C -0.512 4.512 19 H 0.057 0.943 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.895 3.105 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.108 4.108 27 C -0.114 4.114 28 C 0.037 3.963 29 O -0.371 6.371 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.417 0.583 36 H 0.417 0.583 37 H 0.118 0.882 38 H 0.125 0.875 39 H 0.030 0.970 40 H 0.030 0.970 41 H 0.262 0.738 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.071 0.929 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.784 26.993 -7.745 29.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.015 3.985 3 H 0.093 0.907 4 C -0.196 4.196 5 C 0.006 3.994 6 H 0.127 0.873 7 N -0.348 5.348 8 C 0.295 3.705 9 O -0.392 6.392 10 C 0.281 3.719 11 O -0.373 6.373 12 N -0.279 5.279 13 C 0.003 3.997 14 C -0.155 4.155 15 C -0.126 4.126 16 C -0.037 4.037 17 C 0.010 3.990 18 C -0.550 4.550 19 H 0.076 0.924 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.723 3.277 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.127 4.127 27 C -0.134 4.134 28 C -0.041 4.041 29 O -0.290 6.290 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.254 0.746 36 H 0.254 0.746 37 H 0.136 0.864 38 H 0.143 0.857 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.072 0.928 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.090 0.910 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.856 26.807 -7.959 29.649 hybrid contribution -0.224 -0.256 1.177 1.226 sum -10.080 26.550 -6.782 29.198 Atomic orbital electron populations 1.21787 0.92610 1.03282 1.02790 1.23129 0.95735 0.95372 0.84302 0.90674 1.23514 0.94642 1.01942 0.99516 1.22505 0.98478 0.83362 0.95085 0.87324 1.45819 1.07914 1.13726 1.67331 1.20162 0.83655 0.88203 0.78529 1.90777 1.44948 1.56051 1.47444 1.20013 0.84007 0.88005 0.79842 1.90826 1.44787 1.55886 1.45804 1.43012 1.07612 1.09940 1.67377 1.17501 0.98207 0.81630 1.02354 1.20777 0.97584 0.97167 0.99975 1.20917 1.00377 0.91221 1.00093 1.20782 0.92256 0.98781 0.91862 1.18379 0.97859 0.85529 0.97248 1.21059 1.32969 0.96113 1.04851 0.92428 1.25008 0.95335 0.96447 0.97541 1.69953 1.40636 1.04010 1.38683 0.86534 0.79322 0.78230 0.83626 1.20566 1.21168 1.19810 1.21004 0.97473 0.94961 0.99221 1.20979 0.99453 0.92136 1.00812 1.23627 0.84730 1.01730 0.94019 1.88944 1.27573 1.73685 1.38790 0.91552 0.90866 0.91526 0.89176 0.88865 0.74596 0.74577 0.86450 0.85711 0.95168 0.95178 0.92835 0.85827 0.85828 0.91044 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.66 37.16 0.36 -0.32 16 2 C 0.07 0.41 3.98 -25.67 -0.10 0.31 16 3 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 4 C -0.16 -0.78 6.30 -24.72 -0.16 -0.94 16 5 C 0.11 0.76 3.35 -66.40 -0.22 0.54 16 6 H 0.11 0.76 7.67 -51.93 -0.40 0.36 16 7 N -0.69 -5.83 5.04 -52.79 -0.27 -6.10 16 8 C 0.51 5.62 7.88 -11.64 -0.09 5.53 16 9 O -0.52 -6.34 16.19 5.48 0.09 -6.25 16 10 C 0.50 6.56 7.62 -11.64 -0.09 6.47 16 11 O -0.50 -7.74 14.16 5.47 0.08 -7.67 16 12 N -0.63 -8.29 5.32 -10.30 -0.05 -8.34 16 13 C 0.09 1.53 6.28 -83.75 -0.53 1.00 16 14 C -0.14 -2.16 9.96 -39.38 -0.39 -2.55 16 15 C -0.11 -2.01 9.69 -39.61 -0.38 -2.40 16 16 C -0.04 -0.78 5.07 -104.58 -0.53 -1.31 16 17 C 0.05 1.18 5.10 -29.04 -0.15 1.03 16 18 C -0.51 -14.25 9.09 -34.44 -0.31 -14.57 16 19 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 22 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 26 C -0.11 -2.13 9.69 -39.62 -0.38 -2.51 16 27 C -0.11 -2.02 8.65 -39.38 -0.34 -2.36 16 28 C 0.04 0.29 7.50 37.73 0.28 0.57 16 29 O -0.37 -3.19 11.22 -35.23 -0.40 -3.58 16 30 H 0.07 0.34 8.13 -51.93 -0.42 -0.08 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.43 7.65 -51.93 -0.40 0.04 16 34 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.42 3.22 7.82 -40.82 -0.32 2.90 16 36 H 0.42 4.47 8.30 -40.82 -0.34 4.13 16 37 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 38 H 0.12 2.23 8.06 -52.48 -0.42 1.81 16 39 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 40 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 43 H 0.12 2.10 6.42 -52.48 -0.34 1.77 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.77 7.93 -51.93 -0.41 0.36 16 LS Contribution 382.38 15.07 5.76 5.76 Total: -1.00 -32.45 382.38 -8.59 -41.05 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.39 Total: 4.04 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -3.13 Total: -9.95 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.42 Total: -39.93 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.23 Total: -17.50 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.45 -8.59 -41.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001516291013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.928 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds