Wall clock time and date at job start Tue Mar 31 2020 17:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 110.54866 * 2 1 4 4 C 1.54998 * 110.61712 * 123.04237 * 2 1 3 5 5 C 1.54808 * 102.08951 * 155.52528 * 4 2 1 6 6 H 1.09000 * 110.60116 * 97.85532 * 5 4 2 7 7 N 1.46503 * 110.48937 * 220.44354 * 5 4 2 8 8 C 1.34773 * 120.00383 * 201.22215 * 7 5 4 9 9 O 1.21365 * 119.99899 * 359.97438 * 8 7 5 10 10 C 1.49345 * 120.00213 * 179.97438 * 8 7 5 11 11 O 1.21380 * 120.00226 * 0.02562 * 10 8 7 12 12 N 1.34773 * 120.00213 * 180.02562 * 10 8 7 13 13 C 1.39728 * 120.00202 * 185.27541 * 12 10 8 14 14 C 1.38929 * 120.07811 * 213.34097 * 13 12 10 15 15 C 1.38094 * 119.92447 * 179.97438 * 14 13 12 16 16 C 1.38292 * 120.07621 * 359.97438 * 15 14 13 17 17 C 1.50696 * 119.92440 * 180.02562 * 16 15 14 18 18 C 1.50702 * 109.47602 * 90.00000 * 17 16 15 19 19 H 1.08005 * 119.99597 * 0.02562 * 18 17 16 20 20 C 1.37868 * 120.00240 * 179.72740 * 18 17 16 21 21 N 1.31514 * 120.00276 * 0.27223 * 20 18 17 22 22 Si 1.86806 * 119.99997 * 180.27716 * 20 18 17 23 23 H 1.48498 * 109.47258 * 89.99574 * 22 20 18 24 24 H 1.48504 * 109.46831 * 209.99832 * 22 20 18 25 25 H 1.48496 * 109.47163 * 329.99527 * 22 20 18 26 26 C 1.38290 * 120.15218 * 0.27777 * 16 15 14 27 27 C 1.38094 * 120.07484 * 359.49388 * 26 16 15 28 28 C 1.54100 * 104.19151 * 339.12121 * 5 4 2 29 29 O 1.43746 * 107.29012 * 357.97193 * 28 5 4 30 30 H 1.08998 * 109.46917 * 181.42960 * 1 2 3 31 31 H 1.09003 * 109.47273 * 301.42924 * 1 2 3 32 32 H 1.09000 * 109.46848 * 61.42927 * 1 2 3 33 33 H 1.09001 * 110.90645 * 37.33085 * 4 2 1 34 34 H 1.08995 * 110.90828 * 273.72453 * 4 2 1 35 35 H 0.97000 * 119.99691 * 21.22611 * 7 5 4 36 36 H 0.97005 * 119.99969 * 5.27963 * 12 10 8 37 37 H 1.08002 * 120.03715 * 0.02562 * 14 13 12 38 38 H 1.08004 * 119.95941 * 180.02562 * 15 14 13 39 39 H 1.09004 * 109.47132 * 330.00287 * 17 16 15 40 40 H 1.09006 * 109.47279 * 209.99942 * 17 16 15 41 41 H 0.96996 * 120.00360 * 180.02562 * 21 20 18 42 42 H 1.08001 * 119.96620 * 179.72307 * 26 16 15 43 43 H 1.08004 * 120.03867 * 180.25037 * 27 26 16 44 44 H 1.09000 * 109.87869 * 117.39278 * 28 5 4 45 45 H 1.08997 * 109.87866 * 238.39992 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0759 -0.7910 1.2161 5 6 3.4795 -1.2177 0.7219 6 1 4.2423 -0.5364 1.0988 7 7 3.7725 -2.5925 1.1346 8 6 5.0493 -3.0194 1.1981 9 8 5.9563 -2.2652 0.9128 10 6 5.3480 -4.4207 1.6194 11 8 4.4409 -5.1753 1.9043 12 7 6.6247 -4.8476 1.6834 13 6 6.9001 -6.1871 1.9700 14 6 8.0365 -6.5249 2.6942 15 6 8.3053 -7.8497 2.9762 16 6 7.4444 -8.8398 2.5390 17 6 7.7407 -10.2844 2.8491 18 6 7.1012 -10.6580 4.1615 19 1 6.5362 -9.9229 4.7155 20 6 7.2321 -11.9398 4.6520 21 7 7.9196 -12.8352 3.9773 22 14 6.4328 -12.4050 6.2751 23 1 5.0582 -12.9076 6.0239 24 1 7.2348 -13.4659 6.9357 25 1 6.3700 -11.2111 7.1560 26 6 6.3150 -8.5076 1.8134 27 6 6.0377 -7.1844 1.5319 28 6 3.3840 -1.1242 -0.8133 29 8 2.0385 -0.7336 -1.1347 30 1 -0.3633 -1.0273 0.0256 31 1 -0.3634 0.5359 0.8769 32 1 -0.3633 0.4915 -0.9025 33 1 1.4550 -1.6626 1.4236 34 1 2.1509 -0.1505 2.0948 35 1 3.0476 -3.1954 1.3623 36 1 7.3526 -4.2248 1.5304 37 1 8.7086 -5.7521 3.0370 38 1 9.1884 -8.1129 3.5395 39 1 8.8192 -10.4278 2.9167 40 1 7.3392 -10.9160 2.0565 41 1 8.0114 -13.7371 4.3222 42 1 5.6471 -9.2836 1.4696 43 1 5.1533 -6.9253 0.9686 44 1 4.0854 -0.3765 -1.1835 45 1 3.6071 -2.0939 -1.2583 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001516291013.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:03 Heat of formation + Delta-G solvation = -113.906129 kcal Electronic energy + Delta-G solvation = -27033.834350 eV Core-core repulsion = 23015.178665 eV Total energy + Delta-G solvation = -4018.655685 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.03 seconds Orbital eigenvalues (eV) -42.23756 -41.03298 -40.05860 -39.22804 -36.73865 -35.79488 -34.96399 -33.10537 -32.31941 -31.84397 -31.26762 -28.79845 -27.08701 -26.42087 -24.79096 -23.91482 -22.72037 -22.34559 -21.83163 -21.26264 -19.94751 -18.59000 -18.47927 -18.08341 -17.50236 -17.11515 -17.05941 -16.79047 -16.54509 -15.98885 -15.88587 -15.68390 -15.03132 -14.95475 -14.63324 -14.50392 -14.39360 -14.28308 -13.72857 -13.49325 -13.44112 -13.36724 -13.22627 -12.93891 -12.84551 -12.62632 -12.61901 -12.45064 -12.24833 -12.03741 -11.87015 -11.69486 -11.52781 -11.14569 -10.87594 -10.78990 -10.59868 -10.33904 -9.81498 -8.98460 -8.18879 -6.32634 -0.06861 0.52638 0.62368 1.10571 1.40011 1.40698 1.52195 1.96645 2.39804 2.41561 2.83624 2.94819 3.11027 3.20432 3.37665 3.70124 3.91760 3.97363 4.00396 4.08818 4.18869 4.35151 4.41365 4.49448 4.52386 4.56959 4.63005 4.66051 4.72160 4.82334 4.91468 5.05815 5.08217 5.14890 5.24285 5.27451 5.29843 5.37678 5.37802 5.53825 5.74622 5.76986 5.89311 6.05509 6.07156 6.19722 6.22292 6.58310 6.77697 6.79894 7.35741 8.89287 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021991 B = 0.001939 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.965163 B =14440.531292 C =15125.292432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.066 3.934 3 H 0.088 0.912 4 C -0.150 4.150 5 C 0.110 3.890 6 H 0.113 0.887 7 N -0.680 5.680 8 C 0.522 3.478 9 O -0.529 6.529 10 C 0.502 3.498 11 O -0.523 6.523 12 N -0.626 5.626 13 C 0.110 3.890 14 C -0.121 4.121 15 C -0.112 4.112 16 C -0.068 4.068 17 C 0.056 3.944 18 C -0.528 4.528 19 H 0.053 0.947 20 C 0.005 3.995 21 N -0.928 5.928 22 Si 0.963 3.037 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.266 1.266 26 C -0.118 4.118 27 C -0.117 4.117 28 C 0.037 3.963 29 O -0.394 6.394 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.421 0.579 36 H 0.432 0.568 37 H 0.159 0.841 38 H 0.129 0.871 39 H 0.010 0.990 40 H 0.004 0.996 41 H 0.265 0.735 42 H 0.116 0.884 43 H 0.130 0.870 44 H 0.077 0.923 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.588 29.853 -6.632 32.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.009 3.991 3 H 0.106 0.894 4 C -0.188 4.188 5 C 0.006 3.994 6 H 0.131 0.869 7 N -0.334 5.334 8 C 0.302 3.698 9 O -0.406 6.406 10 C 0.284 3.716 11 O -0.399 6.399 12 N -0.273 5.273 13 C 0.016 3.984 14 C -0.141 4.141 15 C -0.131 4.131 16 C -0.069 4.069 17 C 0.019 3.981 18 C -0.566 4.566 19 H 0.071 0.929 20 C -0.193 4.193 21 N -0.568 5.568 22 Si 0.788 3.212 23 H -0.199 1.199 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.136 4.136 27 C -0.137 4.137 28 C -0.041 4.041 29 O -0.314 6.314 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.133 0.867 35 H 0.259 0.741 36 H 0.271 0.729 37 H 0.176 0.824 38 H 0.147 0.853 39 H 0.028 0.972 40 H 0.022 0.978 41 H 0.074 0.926 42 H 0.134 0.866 43 H 0.148 0.852 44 H 0.095 0.905 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.675 29.708 -6.858 32.305 hybrid contribution -0.026 -1.020 0.743 1.262 sum -10.701 28.689 -6.115 31.224 Atomic orbital electron populations 1.21812 0.91948 1.03078 1.03539 1.23360 0.96328 0.95797 0.83622 0.89416 1.23525 0.93081 1.02275 0.99910 1.22648 0.99860 0.82250 0.94652 0.86865 1.45838 1.07093 1.14494 1.65991 1.19684 0.84355 0.86938 0.78776 1.90784 1.45442 1.55904 1.48453 1.20438 0.83497 0.88810 0.78827 1.90823 1.45489 1.56853 1.46694 1.42944 1.08390 1.08886 1.67113 1.17566 0.97400 0.82724 1.00667 1.21051 0.97769 0.96740 0.98538 1.20995 1.00019 0.92007 1.00041 1.20474 0.94420 0.97068 0.94941 1.18118 0.96064 0.88273 0.95681 1.21371 1.33001 0.96351 1.05860 0.92906 1.25897 0.95832 0.96382 1.01227 1.70069 1.41847 1.04434 1.40477 0.85471 0.78447 0.78110 0.79187 1.19893 1.20362 1.19080 1.20942 0.97111 0.95981 0.99611 1.21016 1.00111 0.91586 1.01022 1.23600 0.84761 1.01264 0.94511 1.88926 1.27887 1.74241 1.40350 0.92292 0.88884 0.91970 0.88964 0.86736 0.74096 0.72855 0.82368 0.85310 0.97194 0.97800 0.92573 0.86604 0.85215 0.90524 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.66 71.98 0.70 -0.38 16 2 C 0.07 0.61 3.98 31.28 0.12 0.73 16 3 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 4 C -0.15 -1.09 6.30 31.89 0.20 -0.89 16 5 C 0.11 1.28 3.35 45.98 0.15 1.43 16 6 H 0.11 1.28 7.67 -2.39 -0.02 1.26 16 7 N -0.68 -10.08 5.04 -439.28 -2.21 -12.29 16 8 C 0.52 10.30 7.88 87.24 0.69 10.99 16 9 O -0.53 -11.73 16.19 -3.29 -0.05 -11.78 16 10 C 0.50 12.15 7.62 87.24 0.67 12.81 16 11 O -0.52 -15.44 14.16 -3.34 -0.05 -15.49 16 12 N -0.63 -14.76 5.32 -304.84 -1.62 -16.38 16 13 C 0.11 3.30 6.28 38.21 0.24 3.54 16 14 C -0.12 -3.57 9.96 22.40 0.22 -3.35 16 15 C -0.11 -4.15 9.69 22.25 0.22 -3.93 16 16 C -0.07 -3.01 5.07 -19.84 -0.10 -3.11 16 17 C 0.06 2.97 5.10 29.10 0.15 3.11 16 18 C -0.53 -30.28 9.09 25.60 0.23 -30.04 16 19 H 0.05 3.01 7.74 -2.91 -0.02 2.98 16 20 C 0.00 0.28 5.46 84.65 0.46 0.74 16 21 N -0.93 -55.88 13.29 21.44 0.28 -55.60 16 22 Si 0.96 44.57 29.54 68.60 2.03 46.60 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 C -0.12 -4.76 9.69 22.25 0.22 -4.54 16 27 C -0.12 -4.09 8.65 22.40 0.19 -3.90 16 28 C 0.04 0.52 7.50 72.35 0.54 1.06 16 29 O -0.39 -6.32 11.22 -148.98 -1.67 -7.99 16 30 H 0.06 0.52 8.13 -2.39 -0.02 0.50 16 31 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.09 0.66 7.65 -2.39 -0.02 0.64 16 34 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.42 5.71 7.82 -92.71 -0.72 4.98 16 36 H 0.43 7.87 8.30 -92.70 -0.77 7.10 16 37 H 0.16 3.37 8.06 -2.91 -0.02 3.35 16 38 H 0.13 4.58 8.06 -2.91 -0.02 4.55 16 39 H 0.01 0.55 8.08 -2.39 -0.02 0.53 16 40 H 0.00 0.21 8.08 -2.38 -0.02 0.19 16 41 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 42 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 43 H 0.13 4.34 6.42 -2.91 -0.02 4.32 16 44 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.08 1.27 7.93 -2.39 -0.02 1.26 16 Total: -1.00 -71.12 382.38 1.14 -69.99 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -0.47 Total: 18.67 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 4.90 Total: -15.73 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -3.55 Total: -84.27 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -1.77 Total: -35.26 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -71.12 1.14 -69.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001516291013.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.921 kcal (2) G-P(sol) polarization free energy of solvation -71.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.03 seconds