Wall clock time and date at job start Tue Mar 31 2020 17:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.87167 * 2 1 4 4 O 1.43754 * 110.00196 * 238.91653 * 2 1 3 5 5 C 1.44380 * 106.97395 * 267.02131 * 4 2 1 6 6 C 1.55225 * 103.56425 * 320.00998 * 5 4 2 7 7 C 1.54099 * 109.87986 * 121.01380 * 2 1 3 8 8 H 1.08993 * 110.48973 * 358.73095 * 7 2 1 9 9 C 1.50703 * 110.48754 * 236.21701 * 7 2 1 10 10 O 1.21289 * 119.99778 * 1.84489 * 9 7 2 11 11 N 1.34770 * 120.00147 * 181.84078 * 9 7 2 12 12 N 1.40098 * 119.99992 * 179.72808 * 11 9 7 13 13 C 1.34787 * 120.00254 * 180.27988 * 12 11 9 14 14 O 1.21280 * 119.99390 * 359.97438 * 13 12 11 15 15 C 1.50696 * 119.99979 * 179.97438 * 13 12 11 16 16 H 1.09002 * 109.47554 * 59.99785 * 15 13 12 17 17 C 1.50702 * 109.47085 * 299.99760 * 15 13 12 18 18 H 1.07997 * 119.99798 * 333.98499 * 17 15 13 19 19 C 1.37875 * 120.00190 * 153.99222 * 17 15 13 20 20 N 1.31513 * 120.00226 * 173.51343 * 19 17 15 21 21 Si 1.86803 * 119.99828 * 353.51403 * 19 17 15 22 22 H 1.48502 * 109.47519 * 84.81557 * 21 19 17 23 23 H 1.48503 * 109.47010 * 204.81984 * 21 19 17 24 24 H 1.48507 * 109.47272 * 324.81900 * 21 19 17 25 25 C 1.50702 * 109.46864 * 179.97438 * 15 13 12 26 26 C 1.38232 * 120.00148 * 65.80949 * 25 15 13 27 27 C 1.38230 * 120.00076 * 179.80700 * 26 25 15 28 28 C 1.38238 * 120.00031 * 0.42637 * 27 26 25 29 29 C 1.38236 * 119.99905 * 359.80470 * 28 27 26 30 30 C 1.38236 * 119.99550 * 246.08685 * 25 15 13 31 31 H 1.09002 * 109.47374 * 298.98553 * 1 2 3 32 32 H 1.09000 * 109.47624 * 58.99167 * 1 2 3 33 33 H 1.09007 * 109.47225 * 178.99174 * 1 2 3 34 34 H 1.08993 * 110.62082 * 78.44052 * 5 4 2 35 35 H 1.09008 * 110.61422 * 201.28227 * 5 4 2 36 36 H 1.09000 * 110.89182 * 278.74534 * 6 5 4 37 37 H 1.09001 * 111.01901 * 155.07791 * 6 5 4 38 38 H 0.96995 * 120.00362 * 0.02562 * 11 9 7 39 39 H 0.97006 * 120.00118 * 0.27467 * 12 11 9 40 40 H 0.96996 * 119.99791 * 179.97438 * 20 19 17 41 41 H 1.07999 * 120.00007 * 0.02562 * 26 25 15 42 42 H 1.08001 * 120.00081 * 180.21079 * 27 26 25 43 43 H 1.07999 * 120.00043 * 179.78595 * 28 27 26 44 44 H 1.07996 * 119.99858 * 179.97438 * 29 28 27 45 45 H 1.07998 * 120.00631 * 359.97438 * 30 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0216 -0.6974 -1.1569 5 6 2.2333 -2.0703 -0.7631 6 6 2.8349 -1.9514 0.6629 7 6 2.0539 -0.7467 1.2420 8 1 1.2238 -1.0910 1.8586 9 6 2.9715 0.1409 2.0429 10 8 3.1720 1.2833 1.6882 11 7 3.5692 -0.3347 3.1532 12 7 4.4266 0.4886 3.8946 13 6 5.0289 0.0112 5.0019 14 8 4.8280 -1.1310 5.3567 15 6 5.9516 0.8967 5.7990 16 1 5.4021 1.7689 6.1533 17 6 7.0960 1.3444 4.9266 18 1 7.4021 0.7402 4.0854 19 6 7.7522 2.5252 5.2023 20 7 8.8289 2.8535 4.5223 21 14 7.1118 3.6588 6.5419 22 1 7.6409 3.2185 7.8578 23 1 7.5576 5.0488 6.2690 24 1 5.6277 3.6102 6.5639 25 6 6.4894 0.1290 6.9790 26 6 7.3243 -0.9540 6.7766 27 6 7.8208 -1.6557 7.8591 28 6 7.4752 -1.2800 9.1438 29 6 6.6365 -0.2000 9.3461 30 6 6.1431 0.5042 8.2636 31 1 -0.3634 0.4980 0.8989 32 1 -0.3634 0.5294 -0.8808 33 1 -0.3634 -1.0276 -0.0181 34 1 1.2877 -2.6116 -0.7349 35 1 2.9345 -2.5597 -1.4391 36 1 3.9027 -1.7373 0.6176 37 1 2.6448 -2.8538 1.2439 38 1 3.4091 -1.2484 3.4367 39 1 4.5870 1.4023 3.6109 40 1 9.2903 3.6844 4.7161 41 1 7.5916 -1.2496 5.7729 42 1 8.4759 -2.4997 7.7011 43 1 7.8604 -1.8305 9.9894 44 1 6.3662 0.0933 10.3497 45 1 5.4875 1.3478 8.4216 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001537462239.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:37 Heat of formation + Delta-G solvation = -64.854761 kcal Electronic energy + Delta-G solvation = -28456.835082 eV Core-core repulsion = 24440.306424 eV Total energy + Delta-G solvation = -4016.528658 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.73777 -39.58961 -38.60794 -37.77500 -34.97958 -33.79267 -32.93450 -31.65874 -31.50735 -30.47857 -30.18639 -27.81031 -26.85713 -23.81708 -22.73517 -22.01605 -21.87702 -21.38706 -20.65580 -19.50107 -17.81709 -17.50923 -17.17896 -16.47765 -16.31814 -16.06461 -15.53036 -15.08810 -14.76001 -14.62538 -14.47274 -14.20699 -13.90338 -13.61759 -13.56243 -13.21029 -13.00416 -12.73661 -12.66013 -12.34605 -12.20920 -12.17557 -11.98413 -11.70188 -11.29788 -11.26208 -11.12303 -11.02611 -10.92679 -10.51492 -10.39969 -10.10509 -9.98694 -9.80560 -9.67021 -9.19933 -8.83217 -8.18765 -7.99234 -7.90394 -6.35021 -4.41768 1.97740 2.13458 2.29130 2.44204 3.14802 3.20648 3.24672 3.33464 3.61876 4.07360 4.18997 4.19576 4.46392 4.52396 4.72927 4.82425 4.88703 4.95519 5.01999 5.15628 5.27173 5.28515 5.43769 5.49711 5.53797 5.55481 5.65725 5.70660 5.78997 5.85949 5.87223 6.00212 6.19950 6.23816 6.38312 6.64761 6.67753 6.78780 6.97706 7.01119 7.11442 7.17987 7.19718 7.52187 7.73691 7.94243 8.10589 8.15381 8.63054 8.88442 9.21532 10.75703 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014549 B = 0.003193 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.029480 B = 8766.707395 C = 9748.992811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.081 3.919 3 H 0.120 0.880 4 O -0.366 6.366 5 C 0.047 3.953 6 C -0.150 4.150 7 C -0.131 4.131 8 H 0.114 0.886 9 C 0.517 3.483 10 O -0.534 6.534 11 N -0.518 5.518 12 N -0.521 5.521 13 C 0.540 3.460 14 O -0.559 6.559 15 C 0.035 3.965 16 H 0.074 0.926 17 C -0.523 4.523 18 H 0.084 0.916 19 C 0.091 3.909 20 N -0.876 5.876 21 Si 0.863 3.137 22 H -0.264 1.264 23 H -0.283 1.283 24 H -0.262 1.262 25 C -0.031 4.031 26 C -0.069 4.069 27 C -0.130 4.130 28 C -0.140 4.140 29 C -0.129 4.129 30 C -0.134 4.134 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.427 0.573 39 H 0.438 0.562 40 H 0.271 0.729 41 H 0.118 0.882 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.329 -8.689 -2.621 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.023 3.977 3 H 0.138 0.862 4 O -0.285 6.285 5 C -0.030 4.030 6 C -0.188 4.188 7 C -0.154 4.154 8 H 0.132 0.868 9 C 0.302 3.698 10 O -0.409 6.409 11 N -0.263 5.263 12 N -0.271 5.271 13 C 0.329 3.671 14 O -0.436 6.436 15 C 0.012 3.988 16 H 0.092 0.908 17 C -0.560 4.560 18 H 0.102 0.898 19 C -0.115 4.115 20 N -0.511 5.511 21 Si 0.690 3.310 22 H -0.189 1.189 23 H -0.209 1.209 24 H -0.187 1.187 25 C -0.032 4.032 26 C -0.087 4.087 27 C -0.148 4.148 28 C -0.158 4.158 29 C -0.147 4.147 30 C -0.152 4.152 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.268 0.732 39 H 0.281 0.719 40 H 0.081 0.919 41 H 0.136 0.864 42 H 0.130 0.870 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.120 -8.426 -2.865 15.854 hybrid contribution -0.127 0.538 1.001 1.143 sum -13.246 -7.889 -1.864 15.530 Atomic orbital electron populations 1.22275 0.95025 1.02369 1.02953 1.22796 0.93851 0.98498 0.82530 0.86215 1.88966 1.85952 1.20579 1.33028 1.23581 0.99859 0.84839 0.94688 1.23266 1.01365 0.97040 0.97103 1.22687 0.98498 0.96256 0.97973 0.86754 1.20399 0.81176 0.88549 0.79681 1.90740 1.62971 1.18650 1.68547 1.44771 1.43294 1.14102 1.24181 1.45276 1.43489 1.13801 1.24559 1.21555 0.78389 0.88615 0.78550 1.90613 1.63646 1.19467 1.69898 1.18421 0.94830 0.93774 0.91749 0.90837 1.20504 1.14422 1.07637 1.13448 0.89798 1.24924 0.93974 0.97259 0.95362 1.69856 1.16870 1.24074 1.40266 0.87006 0.80005 0.80657 0.83349 1.18854 1.20893 1.18720 1.19992 0.95420 0.94164 0.93655 1.20847 0.95193 0.94145 0.98538 1.21039 1.00677 1.00156 0.92904 1.20886 1.00122 0.98217 0.96617 1.20885 0.99189 0.96705 0.97930 1.20972 1.01184 1.00350 0.92683 0.91325 0.91406 0.92366 0.91932 0.88565 0.89465 0.88965 0.73181 0.71860 0.91933 0.86387 0.87039 0.87251 0.87178 0.87326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 9.31 37.15 0.35 -1.08 16 2 C 0.08 0.90 3.70 -26.16 -0.10 0.81 16 3 H 0.12 1.62 6.44 -51.93 -0.33 1.29 16 4 O -0.37 -4.41 11.20 -35.23 -0.39 -4.80 16 5 C 0.05 0.40 7.67 38.34 0.29 0.70 16 6 C -0.15 -1.31 6.69 -24.60 -0.16 -1.47 16 7 C -0.13 -1.33 3.06 -90.24 -0.28 -1.60 16 8 H 0.11 0.85 7.70 -51.93 -0.40 0.45 16 9 C 0.52 7.42 7.15 -10.99 -0.08 7.34 16 10 O -0.53 -9.62 15.10 5.55 0.08 -9.54 16 11 N -0.52 -7.81 6.22 31.22 0.19 -7.61 16 12 N -0.52 -9.64 6.16 31.22 0.19 -9.45 16 13 C 0.54 11.10 7.15 -10.98 -0.08 11.02 16 14 O -0.56 -12.03 15.25 5.56 0.08 -11.94 16 15 C 0.04 0.77 1.89 -94.08 -0.18 0.60 16 16 H 0.07 1.58 5.14 -51.93 -0.27 1.31 16 17 C -0.52 -13.19 8.03 -34.44 -0.28 -13.46 16 18 H 0.08 2.33 8.05 -52.49 -0.42 1.91 16 19 C 0.09 2.39 5.47 -17.82 -0.10 2.29 16 20 N -0.88 -24.74 13.96 55.43 0.77 -23.97 16 21 Si 0.86 19.69 26.74 -169.99 -4.55 15.15 16 22 H -0.26 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.26 -5.56 6.31 56.52 0.36 -5.20 16 25 C -0.03 -0.67 3.95 -104.62 -0.41 -1.08 16 26 C -0.07 -1.46 8.29 -39.59 -0.33 -1.79 16 27 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 28 C -0.14 -2.38 10.05 -39.58 -0.40 -2.78 16 29 C -0.13 -2.26 10.05 -39.58 -0.40 -2.65 16 30 C -0.13 -2.63 9.26 -39.58 -0.37 -3.00 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 34 H 0.06 0.42 8.13 -51.93 -0.42 -0.01 16 35 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.09 0.92 7.86 -51.93 -0.41 0.51 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.43 5.64 8.00 -182.60 -1.46 4.18 16 39 H 0.44 8.40 7.89 -182.59 -1.44 6.96 16 40 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.12 2.58 7.90 -52.49 -0.41 2.16 16 42 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 44 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 45 H 0.11 1.97 7.95 -52.49 -0.42 1.55 16 LS Contribution 375.17 15.07 5.65 5.65 Total: -1.00 -31.52 375.17 -9.41 -40.94 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: -8.55 Total: 14.51 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -2.91 Total: -8.94 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 1.16 Total: -41.03 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.23 Total: -26.28 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.55 Total: 15.15 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.52 -9.41 -40.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537462239.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.918 kcal (2) G-P(sol) polarization free energy of solvation -31.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds