Wall clock time and date at job start Tue Mar 31 2020 17:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.87167 * 2 1 4 4 O 1.43754 * 110.00196 * 238.91653 * 2 1 3 5 5 C 1.44380 * 106.97395 * 267.02131 * 4 2 1 6 6 C 1.55225 * 103.56425 * 320.00998 * 5 4 2 7 7 C 1.54099 * 109.87986 * 121.01380 * 2 1 3 8 8 H 1.08993 * 110.48973 * 358.73095 * 7 2 1 9 9 C 1.50703 * 110.48754 * 236.21701 * 7 2 1 10 10 O 1.21289 * 119.99778 * 1.84489 * 9 7 2 11 11 N 1.34770 * 120.00147 * 181.84078 * 9 7 2 12 12 N 1.40098 * 119.99992 * 179.72808 * 11 9 7 13 13 C 1.34787 * 120.00254 * 180.27988 * 12 11 9 14 14 O 1.21280 * 119.99390 * 359.97438 * 13 12 11 15 15 C 1.50696 * 119.99979 * 179.97438 * 13 12 11 16 16 H 1.09002 * 109.47554 * 59.99785 * 15 13 12 17 17 C 1.50702 * 109.47085 * 299.99760 * 15 13 12 18 18 H 1.07997 * 119.99798 * 333.98499 * 17 15 13 19 19 C 1.37875 * 120.00190 * 153.99222 * 17 15 13 20 20 N 1.31513 * 120.00226 * 173.51343 * 19 17 15 21 21 Si 1.86803 * 119.99828 * 353.51403 * 19 17 15 22 22 H 1.48502 * 109.47519 * 84.81557 * 21 19 17 23 23 H 1.48503 * 109.47010 * 204.81984 * 21 19 17 24 24 H 1.48507 * 109.47272 * 324.81900 * 21 19 17 25 25 C 1.50702 * 109.46864 * 179.97438 * 15 13 12 26 26 C 1.38232 * 120.00148 * 65.80949 * 25 15 13 27 27 C 1.38230 * 120.00076 * 179.80700 * 26 25 15 28 28 C 1.38238 * 120.00031 * 0.42637 * 27 26 25 29 29 C 1.38236 * 119.99905 * 359.80470 * 28 27 26 30 30 C 1.38236 * 119.99550 * 246.08685 * 25 15 13 31 31 H 1.09002 * 109.47374 * 298.98553 * 1 2 3 32 32 H 1.09000 * 109.47624 * 58.99167 * 1 2 3 33 33 H 1.09007 * 109.47225 * 178.99174 * 1 2 3 34 34 H 1.08993 * 110.62082 * 78.44052 * 5 4 2 35 35 H 1.09008 * 110.61422 * 201.28227 * 5 4 2 36 36 H 1.09000 * 110.89182 * 278.74534 * 6 5 4 37 37 H 1.09001 * 111.01901 * 155.07791 * 6 5 4 38 38 H 0.96995 * 120.00362 * 0.02562 * 11 9 7 39 39 H 0.97006 * 120.00118 * 0.27467 * 12 11 9 40 40 H 0.96996 * 119.99791 * 179.97438 * 20 19 17 41 41 H 1.07999 * 120.00007 * 0.02562 * 26 25 15 42 42 H 1.08001 * 120.00081 * 180.21079 * 27 26 25 43 43 H 1.07999 * 120.00043 * 179.78595 * 28 27 26 44 44 H 1.07996 * 119.99858 * 179.97438 * 29 28 27 45 45 H 1.07998 * 120.00631 * 359.97438 * 30 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0216 -0.6974 -1.1569 5 6 2.2333 -2.0703 -0.7631 6 6 2.8349 -1.9514 0.6629 7 6 2.0539 -0.7467 1.2420 8 1 1.2238 -1.0910 1.8586 9 6 2.9715 0.1409 2.0429 10 8 3.1720 1.2833 1.6882 11 7 3.5692 -0.3347 3.1532 12 7 4.4266 0.4886 3.8946 13 6 5.0289 0.0112 5.0019 14 8 4.8280 -1.1310 5.3567 15 6 5.9516 0.8967 5.7990 16 1 5.4021 1.7689 6.1533 17 6 7.0960 1.3444 4.9266 18 1 7.4021 0.7402 4.0854 19 6 7.7522 2.5252 5.2023 20 7 8.8289 2.8535 4.5223 21 14 7.1118 3.6588 6.5419 22 1 7.6409 3.2185 7.8578 23 1 7.5576 5.0488 6.2690 24 1 5.6277 3.6102 6.5639 25 6 6.4894 0.1290 6.9790 26 6 7.3243 -0.9540 6.7766 27 6 7.8208 -1.6557 7.8591 28 6 7.4752 -1.2800 9.1438 29 6 6.6365 -0.2000 9.3461 30 6 6.1431 0.5042 8.2636 31 1 -0.3634 0.4980 0.8989 32 1 -0.3634 0.5294 -0.8808 33 1 -0.3634 -1.0276 -0.0181 34 1 1.2877 -2.6116 -0.7349 35 1 2.9345 -2.5597 -1.4391 36 1 3.9027 -1.7373 0.6176 37 1 2.6448 -2.8538 1.2439 38 1 3.4091 -1.2484 3.4367 39 1 4.5870 1.4023 3.6109 40 1 9.2903 3.6844 4.7161 41 1 7.5916 -1.2496 5.7729 42 1 8.4759 -2.4997 7.7011 43 1 7.8604 -1.8305 9.9894 44 1 6.3662 0.0933 10.3497 45 1 5.4875 1.3478 8.4216 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537462239.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:36 Heat of formation + Delta-G solvation = -86.795359 kcal Electronic energy + Delta-G solvation = -28457.786497 eV Core-core repulsion = 24440.306424 eV Total energy + Delta-G solvation = -4017.480074 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.87360 -41.00157 -39.82681 -39.16724 -36.41266 -35.61430 -33.94670 -33.41811 -32.34310 -31.70385 -31.62792 -29.37212 -27.75003 -25.62929 -23.77996 -23.37504 -22.96262 -22.67033 -21.87973 -20.82210 -19.19654 -18.98560 -18.86849 -17.69406 -17.51014 -17.23960 -16.71218 -16.54819 -16.16265 -15.93920 -15.84997 -15.47748 -15.27722 -14.94424 -14.90034 -14.44497 -14.30286 -14.13897 -13.80951 -13.74391 -13.52820 -13.18182 -13.03818 -12.87854 -12.75159 -12.49350 -12.39700 -12.06718 -12.03156 -11.98440 -11.87789 -11.67048 -11.48578 -11.31756 -10.94348 -10.76139 -10.62778 -9.64361 -9.44458 -9.40161 -8.38474 -6.48379 0.55547 0.67525 0.92020 1.20356 1.33459 1.37421 1.42526 1.73860 2.28163 2.82286 2.91030 2.94373 3.14228 3.37106 3.55815 3.73171 4.01753 4.07777 4.13355 4.16649 4.20365 4.26637 4.31612 4.39266 4.42898 4.54262 4.58255 4.66089 4.80492 4.81020 4.89338 4.89811 5.00165 5.13237 5.14237 5.27837 5.31194 5.35319 5.59788 5.65764 5.71006 5.74350 5.92038 5.92730 6.14176 6.29071 6.46782 6.54700 6.82071 7.17671 7.34378 8.76049 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014549 B = 0.003193 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.029480 B = 8766.707395 C = 9748.992811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.077 3.923 3 H 0.085 0.915 4 O -0.395 6.395 5 C 0.044 3.956 6 C -0.147 4.147 7 C -0.121 4.121 8 H 0.153 0.847 9 C 0.516 3.484 10 O -0.575 6.575 11 N -0.512 5.512 12 N -0.525 5.525 13 C 0.540 3.460 14 O -0.570 6.570 15 C 0.036 3.964 16 H 0.081 0.919 17 C -0.511 4.511 18 H 0.040 0.960 19 C 0.039 3.961 20 N -0.928 5.928 21 Si 0.918 3.082 22 H -0.257 1.257 23 H -0.286 1.286 24 H -0.235 1.235 25 C -0.058 4.058 26 C -0.099 4.099 27 C -0.134 4.134 28 C -0.134 4.134 29 C -0.125 4.125 30 C -0.149 4.149 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.126 0.874 38 H 0.437 0.563 39 H 0.433 0.567 40 H 0.271 0.729 41 H 0.091 0.909 42 H 0.135 0.865 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.579 -10.304 -0.114 18.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.019 3.981 3 H 0.103 0.897 4 O -0.315 6.315 5 C -0.032 4.032 6 C -0.185 4.185 7 C -0.143 4.143 8 H 0.171 0.829 9 C 0.304 3.696 10 O -0.453 6.453 11 N -0.259 5.259 12 N -0.272 5.272 13 C 0.329 3.671 14 O -0.448 6.448 15 C 0.013 3.987 16 H 0.099 0.901 17 C -0.549 4.549 18 H 0.058 0.942 19 C -0.162 4.162 20 N -0.565 5.565 21 Si 0.741 3.259 22 H -0.182 1.182 23 H -0.212 1.212 24 H -0.159 1.159 25 C -0.059 4.059 26 C -0.118 4.118 27 C -0.151 4.151 28 C -0.151 4.151 29 C -0.143 4.143 30 C -0.167 4.167 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.144 0.856 38 H 0.280 0.720 39 H 0.276 0.724 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.153 0.847 43 H 0.168 0.832 44 H 0.166 0.834 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.402 -10.076 -0.361 18.409 hybrid contribution 0.603 0.919 0.150 1.110 sum -14.799 -9.157 -0.211 17.404 Atomic orbital electron populations 1.22219 0.92574 1.03846 1.03245 1.22773 0.95668 0.96905 0.82766 0.89716 1.88934 1.86360 1.22522 1.33691 1.23825 1.01535 0.83481 0.94382 1.23319 0.99675 0.97599 0.97927 1.22803 0.98565 0.95605 0.97347 0.82903 1.21329 0.80734 0.88547 0.78994 1.90729 1.64347 1.20804 1.69375 1.44955 1.42629 1.14142 1.24146 1.45131 1.43659 1.14023 1.24361 1.21237 0.78534 0.88280 0.79057 1.90586 1.64195 1.19594 1.70404 1.18343 0.93802 0.94577 0.91937 0.90093 1.20467 1.15067 1.06793 1.12529 0.94160 1.25687 0.93991 0.98823 0.97661 1.69996 1.18831 1.24902 1.42816 0.86123 0.81051 0.78179 0.80501 1.18187 1.21169 1.15892 1.19964 0.96670 0.95016 0.94221 1.20830 0.96951 0.95571 0.98426 1.21357 1.00495 1.00368 0.92921 1.21369 0.98882 0.97857 0.97017 1.21365 0.97984 0.95937 0.99030 1.21250 1.01812 1.01259 0.92390 0.90545 0.91709 0.90178 0.89013 0.87818 0.91944 0.85554 0.71980 0.72446 0.92001 0.89085 0.84738 0.83207 0.83373 0.85914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.31 71.98 0.67 -1.74 16 2 C 0.08 1.67 3.70 30.96 0.11 1.79 16 3 H 0.08 2.43 6.44 -2.39 -0.02 2.41 16 4 O -0.40 -9.30 11.20 -148.98 -1.67 -10.97 16 5 C 0.04 0.65 7.67 72.75 0.56 1.21 16 6 C -0.15 -2.31 6.69 31.97 0.21 -2.10 16 7 C -0.12 -2.26 3.06 -10.55 -0.03 -2.29 16 8 H 0.15 1.73 7.70 -2.39 -0.02 1.71 16 9 C 0.52 14.94 7.15 87.66 0.63 15.57 16 10 O -0.57 -21.65 15.10 -3.06 -0.05 -21.70 16 11 N -0.51 -15.48 6.22 -173.53 -1.08 -16.56 16 12 N -0.52 -20.00 6.16 -173.52 -1.07 -21.06 16 13 C 0.54 22.74 7.15 87.65 0.63 23.37 16 14 O -0.57 -24.74 15.25 -3.03 -0.05 -24.79 16 15 C 0.04 1.62 1.89 -13.03 -0.02 1.59 16 16 H 0.08 3.44 5.14 -2.39 -0.01 3.43 16 17 C -0.51 -27.07 8.03 25.60 0.21 -26.86 16 18 H 0.04 2.42 8.05 -2.91 -0.02 2.40 16 19 C 0.04 2.14 5.47 84.65 0.46 2.60 16 20 N -0.93 -54.94 13.96 21.45 0.30 -54.64 16 21 Si 0.92 40.64 26.74 68.60 1.83 42.48 16 22 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 23 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.24 -9.29 6.31 99.48 0.63 -8.66 16 25 C -0.06 -2.47 3.95 -19.87 -0.08 -2.55 16 26 C -0.10 -4.26 8.29 22.27 0.18 -4.07 16 27 C -0.13 -4.66 10.05 22.27 0.22 -4.44 16 28 C -0.13 -4.01 10.05 22.27 0.22 -3.79 16 29 C -0.13 -3.89 10.05 22.27 0.22 -3.67 16 30 C -0.15 -5.53 9.26 22.27 0.21 -5.32 16 31 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 0.85 8.13 -2.38 -0.02 0.83 16 34 H 0.09 0.87 8.13 -2.39 -0.02 0.85 16 35 H 0.10 1.37 8.14 -2.38 -0.02 1.36 16 36 H 0.06 1.30 7.86 -2.39 -0.02 1.28 16 37 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.44 11.21 8.00 -213.33 -1.71 9.51 16 39 H 0.43 17.42 7.89 -213.31 -1.68 15.74 16 40 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 41 H 0.09 4.25 7.90 -2.91 -0.02 4.22 16 42 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 43 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 44 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 45 H 0.12 4.09 7.95 -2.91 -0.02 4.07 16 Total: -1.00 -73.35 375.17 0.19 -73.16 By element: Atomic # 1 Polarization: 47.22 SS G_CDS: -2.44 Total: 44.78 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 4.41 Total: -10.69 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -1.85 Total: -92.26 kcal Atomic # 8 Polarization: -55.70 SS G_CDS: -1.76 Total: -57.46 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 1.83 Total: 42.48 kcal Total: -73.35 0.19 -73.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537462239.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.632 kcal (2) G-P(sol) polarization free energy of solvation -73.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds