Wall clock time and date at job start Tue Mar 31 2020 17:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.99124 * 2 1 4 4 O 1.43743 * 109.87913 * 238.90493 * 2 1 3 5 5 C 1.44384 * 106.97488 * 214.06237 * 4 2 1 6 6 C 1.54994 * 103.49006 * 40.06494 * 5 4 2 7 7 C 1.54105 * 109.87670 * 121.07767 * 2 1 3 8 8 H 1.09001 * 110.59713 * 240.18660 * 7 2 1 9 9 C 1.50701 * 110.48776 * 2.77578 * 7 2 1 10 10 O 1.21276 * 119.99906 * 81.96665 * 9 7 2 11 11 N 1.34775 * 119.99863 * 261.97044 * 9 7 2 12 12 N 1.40108 * 119.99829 * 180.02562 * 11 9 7 13 13 C 1.34778 * 120.00196 * 179.97438 * 12 11 9 14 14 O 1.21282 * 119.99542 * 0.02562 * 13 12 11 15 15 C 1.50689 * 119.99781 * 179.97438 * 13 12 11 16 16 H 1.09000 * 109.47830 * 300.00234 * 15 13 12 17 17 C 1.50704 * 109.47448 * 60.00590 * 15 13 12 18 18 H 1.08003 * 119.99698 * 235.74328 * 17 15 13 19 19 C 1.37875 * 119.99849 * 55.73601 * 17 15 13 20 20 N 1.31506 * 120.00358 * 1.90116 * 19 17 15 21 21 Si 1.86796 * 119.99686 * 181.90291 * 19 17 15 22 22 H 1.48499 * 109.47416 * 89.99938 * 21 19 17 23 23 H 1.48502 * 109.47331 * 210.00079 * 21 19 17 24 24 H 1.48505 * 109.47277 * 330.00016 * 21 19 17 25 25 C 1.50704 * 109.46970 * 179.97438 * 15 13 12 26 26 C 1.38238 * 119.99915 * 46.37538 * 25 15 13 27 27 C 1.38234 * 120.00376 * 179.97438 * 26 25 15 28 28 C 1.38233 * 119.99667 * 0.27613 * 27 26 25 29 29 C 1.38240 * 120.00092 * 359.50826 * 28 27 26 30 30 C 1.38235 * 120.00335 * 226.34943 * 25 15 13 31 31 H 1.09005 * 109.47039 * 301.96298 * 1 2 3 32 32 H 1.09000 * 109.47058 * 61.96084 * 1 2 3 33 33 H 1.08994 * 109.47581 * 181.95862 * 1 2 3 34 34 H 1.08996 * 110.62063 * 281.56291 * 5 4 2 35 35 H 1.09000 * 110.61397 * 158.56443 * 5 4 2 36 36 H 1.08997 * 110.90953 * 204.77636 * 6 5 4 37 37 H 1.08996 * 110.93692 * 81.18281 * 6 5 4 38 38 H 0.96991 * 120.00535 * 359.97438 * 11 9 7 39 39 H 0.97005 * 119.99846 * 359.97438 * 12 11 9 40 40 H 0.96998 * 120.00342 * 179.97438 * 20 19 17 41 41 H 1.08003 * 119.99982 * 359.97438 * 26 25 15 42 42 H 1.07990 * 119.99963 * 180.02562 * 27 26 25 43 43 H 1.08005 * 119.99914 * 179.72901 * 28 27 26 44 44 H 1.08001 * 120.00248 * 180.27471 * 29 28 27 45 45 H 1.07998 * 120.00000 * 359.97438 * 30 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0188 -0.6981 -1.1575 5 6 3.2379 -1.3643 -0.7644 6 6 2.9195 -1.8914 0.6579 7 6 2.0539 -0.7481 1.2412 8 1 2.6614 -0.0870 1.8594 9 6 0.9072 -1.3102 2.0414 10 8 0.3982 -2.3616 1.7154 11 7 0.4474 -0.6444 3.1192 12 7 -0.6183 -1.1672 3.8634 13 6 -1.0779 -0.5018 4.9416 14 8 -0.5692 0.5499 5.2672 15 6 -2.2245 -1.0639 5.7416 16 1 -3.1005 -1.1636 5.1006 17 6 -1.8427 -2.4169 6.2845 18 1 -2.4587 -3.2779 6.0708 19 6 -0.7070 -2.5555 7.0539 20 7 0.0227 -1.5009 7.3452 21 14 -0.2048 -4.2413 7.6825 22 1 0.6878 -4.8936 6.6910 23 1 0.5136 -4.0943 8.9738 24 1 -1.4165 -5.0763 7.8823 25 6 -2.5416 -0.1355 6.8856 26 6 -2.6428 1.2252 6.6638 27 6 -2.9341 2.0768 7.7130 28 6 -3.1187 1.5683 8.9851 29 6 -3.0220 0.2071 9.2061 30 6 -2.7318 -0.6446 8.1566 31 1 -0.3633 0.5440 0.8719 32 1 -0.3633 0.4831 -0.9070 33 1 -0.3634 -1.0270 0.0351 34 1 4.0685 -0.6591 -0.7354 35 1 3.4584 -2.1910 -1.4397 36 1 3.8330 -2.0223 1.2378 37 1 2.3541 -2.8221 0.6108 38 1 0.8547 0.1963 3.3802 39 1 -1.0255 -2.0082 3.6027 40 1 0.8214 -1.5984 7.8868 41 1 -2.4941 1.6230 5.6708 42 1 -3.0135 3.1397 7.5396 43 1 -3.3420 2.2341 9.8056 44 1 -3.1706 -0.1907 10.1991 45 1 -2.6537 -1.7077 8.3298 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001537462240.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:41 Heat of formation + Delta-G solvation = -58.477518 kcal Electronic energy + Delta-G solvation = -29143.248963 eV Core-core repulsion = 25126.996843 eV Total energy + Delta-G solvation = -4016.252120 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.66666 -39.22184 -38.31936 -37.31732 -34.58764 -33.74841 -32.76324 -31.61818 -30.98742 -30.21976 -29.73886 -27.29161 -26.30410 -24.06867 -22.63401 -22.32393 -21.34637 -20.97286 -20.32038 -19.21095 -17.53952 -17.21305 -16.67684 -16.39806 -15.84696 -15.59937 -15.34309 -15.18951 -14.81410 -14.74149 -14.16804 -13.83649 -13.70815 -13.41046 -12.98858 -12.74737 -12.47369 -12.41858 -12.30249 -12.27865 -12.17916 -12.11365 -11.41078 -11.38044 -11.15059 -11.06606 -11.02476 -10.84486 -10.62506 -10.41557 -10.10841 -10.06356 -9.76580 -9.66016 -9.49605 -8.85641 -8.57130 -7.76400 -7.57528 -7.48743 -6.23931 -4.40836 2.35039 2.54020 2.61573 2.66639 3.17265 3.26156 3.27287 3.65951 3.94698 4.22741 4.26941 4.38049 4.60667 4.84244 4.90657 4.98428 5.02287 5.05739 5.19095 5.28657 5.34947 5.46274 5.56497 5.72975 5.80549 5.86525 5.90973 5.98318 5.99724 6.18236 6.22486 6.35929 6.60139 6.65972 6.71070 6.78841 7.04984 7.12980 7.30120 7.41773 7.48980 7.57252 7.61133 7.68879 8.07563 8.18577 8.34504 8.47626 8.65006 9.27203 9.44666 10.76271 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014798 B = 0.003596 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.698698 B = 7785.579158 C = 9126.025404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.093 3.907 3 H 0.078 0.922 4 O -0.369 6.369 5 C 0.049 3.951 6 C -0.142 4.142 7 C -0.135 4.135 8 H 0.103 0.897 9 C 0.521 3.479 10 O -0.543 6.543 11 N -0.515 5.515 12 N -0.529 5.529 13 C 0.552 3.448 14 O -0.547 6.547 15 C 0.068 3.932 16 H 0.064 0.936 17 C -0.544 4.544 18 H 0.071 0.929 19 C 0.075 3.925 20 N -0.843 5.843 21 Si 0.889 3.111 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.269 1.269 25 C -0.016 4.016 26 C -0.100 4.100 27 C -0.144 4.144 28 C -0.142 4.142 29 C -0.147 4.147 30 C -0.062 4.062 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.425 0.575 39 H 0.428 0.572 40 H 0.266 0.734 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.121 3.422 -9.439 10.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.035 3.965 3 H 0.096 0.904 4 O -0.289 6.289 5 C -0.028 4.028 6 C -0.180 4.180 7 C -0.158 4.158 8 H 0.122 0.878 9 C 0.306 3.694 10 O -0.420 6.420 11 N -0.258 5.258 12 N -0.280 5.280 13 C 0.341 3.659 14 O -0.422 6.422 15 C 0.046 3.954 16 H 0.082 0.918 17 C -0.582 4.582 18 H 0.090 0.910 19 C -0.134 4.134 20 N -0.475 5.475 21 Si 0.716 3.284 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.194 1.194 25 C -0.017 4.017 26 C -0.118 4.118 27 C -0.163 4.163 28 C -0.160 4.160 29 C -0.165 4.165 30 C -0.080 4.080 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.265 0.735 39 H 0.270 0.730 40 H 0.076 0.924 41 H 0.126 0.874 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.191 3.530 -9.496 10.621 hybrid contribution 0.984 -0.779 0.907 1.548 sum 4.175 2.751 -8.589 9.938 Atomic orbital electron populations 1.22166 0.93219 1.04453 1.02721 1.22576 0.95777 0.94998 0.83159 0.90374 1.88907 1.39706 1.67684 1.32559 1.23544 0.87597 0.96422 0.95191 1.23168 0.99824 0.99019 0.95948 1.22715 0.96041 0.99483 0.97593 0.87847 1.20117 0.84555 0.84916 0.79853 1.90698 1.59443 1.22802 1.69051 1.44840 1.30376 1.25013 1.25547 1.45311 1.28238 1.26882 1.27538 1.21676 0.85191 0.82863 0.76142 1.90553 1.60256 1.24119 1.67226 1.17792 0.91238 0.95075 0.91323 0.91777 1.20752 1.10513 0.92095 1.34817 0.91035 1.25060 0.96228 0.96710 0.95360 1.70052 1.14719 1.28055 1.34707 0.86615 0.79113 0.84240 0.78422 1.20486 1.21063 1.19381 1.19704 0.94223 0.92419 0.95338 1.20980 0.98718 0.93675 0.98415 1.20820 1.03536 0.98360 0.93540 1.20797 1.03688 0.95254 0.96309 1.20998 1.03405 0.93704 0.98430 1.21141 0.95031 1.00336 0.91518 0.90958 0.91504 0.90304 0.92012 0.88629 0.89664 0.88324 0.73450 0.73031 0.92400 0.87416 0.88036 0.88137 0.87936 0.85336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 8.42 37.16 0.31 -1.78 16 2 C 0.09 1.06 4.05 -26.16 -0.11 0.96 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 O -0.37 -4.60 11.19 -35.23 -0.39 -5.00 16 5 C 0.05 0.47 7.72 38.21 0.29 0.76 16 6 C -0.14 -1.54 6.66 -24.72 -0.16 -1.70 16 7 C -0.14 -1.59 3.43 -90.24 -0.31 -1.90 16 8 H 0.10 0.98 8.13 -51.93 -0.42 0.56 16 9 C 0.52 8.19 4.92 -10.99 -0.05 8.13 16 10 O -0.54 -10.21 14.56 5.56 0.08 -10.13 16 11 N -0.51 -8.74 6.12 31.22 0.19 -8.55 16 12 N -0.53 -10.53 6.16 31.22 0.19 -10.34 16 13 C 0.55 12.33 5.59 -10.99 -0.06 12.26 16 14 O -0.55 -13.32 13.73 5.56 0.08 -13.24 16 15 C 0.07 1.54 2.78 -94.08 -0.26 1.28 16 16 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 17 C -0.54 -12.89 7.11 -34.44 -0.24 -13.14 16 18 H 0.07 1.65 7.81 -52.48 -0.41 1.24 16 19 C 0.07 1.84 4.02 -17.82 -0.07 1.77 16 20 N -0.84 -22.19 10.90 55.43 0.60 -21.58 16 21 Si 0.89 19.72 29.54 -169.99 -5.02 14.70 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 C -0.02 -0.36 4.51 -104.62 -0.47 -0.83 16 26 C -0.10 -2.15 8.21 -39.58 -0.32 -2.47 16 27 C -0.14 -2.83 10.05 -39.58 -0.40 -3.23 16 28 C -0.14 -2.71 10.05 -39.58 -0.40 -3.10 16 29 C -0.15 -2.96 10.05 -39.58 -0.40 -3.36 16 30 C -0.06 -1.40 8.20 -39.58 -0.32 -1.72 16 31 H 0.07 0.89 7.64 -51.93 -0.40 0.49 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.17 6.51 -51.93 -0.34 0.83 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.10 1.30 6.97 -51.93 -0.36 0.93 16 38 H 0.42 6.78 7.99 -182.60 -1.46 5.32 16 39 H 0.43 8.50 7.89 -182.59 -1.44 7.06 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.11 2.28 6.94 -52.48 -0.36 1.91 16 42 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 43 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 44 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 45 H 0.13 2.98 6.06 -52.49 -0.32 2.66 16 LS Contribution 366.56 15.07 5.52 5.52 Total: -1.00 -30.15 366.56 -10.18 -40.32 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: -8.45 Total: 16.37 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -2.98 Total: -8.07 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.99 Total: -40.47 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.24 Total: -28.36 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.15 -10.18 -40.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537462240.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.155 kcal (2) G-P(sol) polarization free energy of solvation -30.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds