Wall clock time and date at job start Tue Mar 31 2020 17:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.99124 * 2 1 4 4 O 1.43743 * 109.87913 * 238.90493 * 2 1 3 5 5 C 1.44384 * 106.97488 * 214.06237 * 4 2 1 6 6 C 1.54994 * 103.49006 * 40.06494 * 5 4 2 7 7 C 1.54105 * 109.87670 * 121.07767 * 2 1 3 8 8 H 1.09001 * 110.59713 * 240.18660 * 7 2 1 9 9 C 1.50701 * 110.48776 * 2.77578 * 7 2 1 10 10 O 1.21276 * 119.99906 * 81.96665 * 9 7 2 11 11 N 1.34775 * 119.99863 * 261.97044 * 9 7 2 12 12 N 1.40108 * 119.99829 * 180.02562 * 11 9 7 13 13 C 1.34778 * 120.00196 * 179.97438 * 12 11 9 14 14 O 1.21282 * 119.99542 * 0.02562 * 13 12 11 15 15 C 1.50689 * 119.99781 * 179.97438 * 13 12 11 16 16 H 1.09000 * 109.47830 * 300.00234 * 15 13 12 17 17 C 1.50704 * 109.47448 * 60.00590 * 15 13 12 18 18 H 1.08003 * 119.99698 * 235.74328 * 17 15 13 19 19 C 1.37875 * 119.99849 * 55.73601 * 17 15 13 20 20 N 1.31506 * 120.00358 * 1.90116 * 19 17 15 21 21 Si 1.86796 * 119.99686 * 181.90291 * 19 17 15 22 22 H 1.48499 * 109.47416 * 89.99938 * 21 19 17 23 23 H 1.48502 * 109.47331 * 210.00079 * 21 19 17 24 24 H 1.48505 * 109.47277 * 330.00016 * 21 19 17 25 25 C 1.50704 * 109.46970 * 179.97438 * 15 13 12 26 26 C 1.38238 * 119.99915 * 46.37538 * 25 15 13 27 27 C 1.38234 * 120.00376 * 179.97438 * 26 25 15 28 28 C 1.38233 * 119.99667 * 0.27613 * 27 26 25 29 29 C 1.38240 * 120.00092 * 359.50826 * 28 27 26 30 30 C 1.38235 * 120.00335 * 226.34943 * 25 15 13 31 31 H 1.09005 * 109.47039 * 301.96298 * 1 2 3 32 32 H 1.09000 * 109.47058 * 61.96084 * 1 2 3 33 33 H 1.08994 * 109.47581 * 181.95862 * 1 2 3 34 34 H 1.08996 * 110.62063 * 281.56291 * 5 4 2 35 35 H 1.09000 * 110.61397 * 158.56443 * 5 4 2 36 36 H 1.08997 * 110.90953 * 204.77636 * 6 5 4 37 37 H 1.08996 * 110.93692 * 81.18281 * 6 5 4 38 38 H 0.96991 * 120.00535 * 359.97438 * 11 9 7 39 39 H 0.97005 * 119.99846 * 359.97438 * 12 11 9 40 40 H 0.96998 * 120.00342 * 179.97438 * 20 19 17 41 41 H 1.08003 * 119.99982 * 359.97438 * 26 25 15 42 42 H 1.07990 * 119.99963 * 180.02562 * 27 26 25 43 43 H 1.08005 * 119.99914 * 179.72901 * 28 27 26 44 44 H 1.08001 * 120.00248 * 180.27471 * 29 28 27 45 45 H 1.07998 * 120.00000 * 359.97438 * 30 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0188 -0.6981 -1.1575 5 6 3.2379 -1.3643 -0.7644 6 6 2.9195 -1.8914 0.6579 7 6 2.0539 -0.7481 1.2412 8 1 2.6614 -0.0870 1.8594 9 6 0.9072 -1.3102 2.0414 10 8 0.3982 -2.3616 1.7154 11 7 0.4474 -0.6444 3.1192 12 7 -0.6183 -1.1672 3.8634 13 6 -1.0779 -0.5018 4.9416 14 8 -0.5692 0.5499 5.2672 15 6 -2.2245 -1.0639 5.7416 16 1 -3.1005 -1.1636 5.1006 17 6 -1.8427 -2.4169 6.2845 18 1 -2.4587 -3.2779 6.0708 19 6 -0.7070 -2.5555 7.0539 20 7 0.0227 -1.5009 7.3452 21 14 -0.2048 -4.2413 7.6825 22 1 0.6878 -4.8936 6.6910 23 1 0.5136 -4.0943 8.9738 24 1 -1.4165 -5.0763 7.8823 25 6 -2.5416 -0.1355 6.8856 26 6 -2.6428 1.2252 6.6638 27 6 -2.9341 2.0768 7.7130 28 6 -3.1187 1.5683 8.9851 29 6 -3.0220 0.2071 9.2061 30 6 -2.7318 -0.6446 8.1566 31 1 -0.3633 0.5440 0.8719 32 1 -0.3633 0.4831 -0.9070 33 1 -0.3634 -1.0270 0.0351 34 1 4.0685 -0.6591 -0.7354 35 1 3.4584 -2.1910 -1.4397 36 1 3.8330 -2.0223 1.2378 37 1 2.3541 -2.8221 0.6108 38 1 0.8547 0.1963 3.3802 39 1 -1.0255 -2.0082 3.6027 40 1 0.8214 -1.5984 7.8868 41 1 -2.4941 1.6230 5.6708 42 1 -3.0135 3.1397 7.5396 43 1 -3.3420 2.2341 9.8056 44 1 -3.1706 -0.1907 10.1991 45 1 -2.6537 -1.7077 8.3298 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537462240.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:40 Heat of formation + Delta-G solvation = -77.852046 kcal Electronic energy + Delta-G solvation = -29144.089105 eV Core-core repulsion = 25126.996843 eV Total energy + Delta-G solvation = -4017.092263 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.83076 -40.76924 -39.61033 -38.84650 -36.11925 -35.55724 -33.83149 -32.74388 -32.49614 -31.66851 -31.34091 -28.93201 -27.31168 -25.83877 -23.82416 -23.16294 -22.94995 -22.55099 -21.74594 -20.64861 -18.86957 -18.81641 -17.99203 -17.63203 -17.13680 -17.01864 -16.76513 -16.53411 -16.19971 -16.09777 -15.70623 -15.38259 -15.16756 -14.88235 -14.44986 -14.12040 -13.95630 -13.83455 -13.77361 -13.43960 -13.34472 -13.15157 -13.04847 -12.81396 -12.59248 -12.40012 -12.29879 -12.04382 -11.99872 -11.91077 -11.78393 -11.43939 -11.29058 -11.17270 -10.72822 -10.63716 -10.35998 -9.37184 -9.14457 -9.10340 -8.13529 -6.32611 0.81624 0.92938 1.16292 1.36257 1.39484 1.43506 1.49385 2.22087 2.41448 2.82247 3.09553 3.14191 3.30820 3.43017 3.64008 3.84994 4.05104 4.16546 4.25582 4.31294 4.34391 4.38045 4.49554 4.51517 4.56294 4.58576 4.69511 4.82646 4.88390 4.92648 4.94646 5.03587 5.10769 5.15311 5.17643 5.44897 5.53562 5.66697 5.84952 5.87878 5.90454 5.93044 5.96002 5.98729 6.40852 6.52863 6.68434 6.85614 7.06635 7.36833 7.76844 8.84984 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014798 B = 0.003596 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.698698 B = 7785.579158 C = 9126.025404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.095 3.905 3 H 0.110 0.890 4 O -0.392 6.392 5 C 0.050 3.950 6 C -0.143 4.143 7 C -0.132 4.132 8 H 0.135 0.865 9 C 0.522 3.478 10 O -0.577 6.577 11 N -0.513 5.513 12 N -0.531 5.531 13 C 0.554 3.446 14 O -0.570 6.570 15 C 0.058 3.942 16 H 0.075 0.925 17 C -0.540 4.540 18 H 0.072 0.928 19 C 0.044 3.956 20 N -0.869 5.869 21 Si 0.937 3.063 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.261 1.261 25 C -0.036 4.036 26 C -0.115 4.115 27 C -0.145 4.145 28 C -0.139 4.139 29 C -0.152 4.152 30 C -0.085 4.085 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.430 0.570 39 H 0.427 0.573 40 H 0.258 0.742 41 H 0.104 0.896 42 H 0.131 0.869 43 H 0.138 0.862 44 H 0.126 0.874 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.041 4.682 -9.451 11.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.037 3.963 3 H 0.127 0.873 4 O -0.312 6.312 5 C -0.026 4.026 6 C -0.181 4.181 7 C -0.154 4.154 8 H 0.153 0.847 9 C 0.310 3.690 10 O -0.455 6.455 11 N -0.258 5.258 12 N -0.279 5.279 13 C 0.344 3.656 14 O -0.447 6.447 15 C 0.035 3.965 16 H 0.093 0.907 17 C -0.578 4.578 18 H 0.090 0.910 19 C -0.161 4.161 20 N -0.503 5.503 21 Si 0.763 3.237 22 H -0.213 1.213 23 H -0.215 1.215 24 H -0.185 1.185 25 C -0.037 4.037 26 C -0.134 4.134 27 C -0.163 4.163 28 C -0.157 4.157 29 C -0.170 4.170 30 C -0.103 4.103 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.109 0.891 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.087 0.913 38 H 0.272 0.728 39 H 0.268 0.732 40 H 0.067 0.933 41 H 0.122 0.878 42 H 0.149 0.851 43 H 0.155 0.845 44 H 0.144 0.856 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.102 4.770 -9.529 11.419 hybrid contribution 0.641 -1.183 0.849 1.591 sum 4.743 3.587 -8.680 10.521 Atomic orbital electron populations 1.22125 0.94626 1.02476 1.03178 1.22689 0.94758 0.96302 0.82591 0.87260 1.88884 1.41109 1.68155 1.33040 1.23743 0.87334 0.97304 0.94188 1.23200 1.00082 0.97361 0.97449 1.22874 0.94623 1.00384 0.97565 0.84717 1.20958 0.84782 0.84223 0.79065 1.90684 1.60672 1.24460 1.69713 1.45037 1.29717 1.25412 1.25652 1.45114 1.29001 1.26459 1.27308 1.21484 0.85070 0.82623 0.76473 1.90519 1.60991 1.25086 1.68089 1.17906 0.91910 0.94776 0.91911 0.90691 1.20933 1.10087 0.92720 1.34028 0.90995 1.25502 0.96347 0.98634 0.95622 1.70183 1.14946 1.29348 1.35798 0.85871 0.78726 0.81664 0.77397 1.21294 1.21513 1.18481 1.19783 0.95290 0.93127 0.95494 1.21061 0.99639 0.93567 0.99084 1.21197 1.02194 0.99677 0.93270 1.21201 1.02142 0.95235 0.97153 1.21306 1.02538 0.94271 0.98853 1.21121 0.96844 0.99995 0.92361 0.91193 0.90423 0.93366 0.89106 0.87579 0.87428 0.91255 0.72808 0.73233 0.93293 0.87798 0.85116 0.84462 0.85636 0.87008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 8.42 71.98 0.61 -3.47 16 2 C 0.09 1.97 4.05 30.97 0.13 2.10 16 3 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 4 O -0.39 -9.02 11.19 -148.98 -1.67 -10.69 16 5 C 0.05 0.83 7.72 72.66 0.56 1.39 16 6 C -0.14 -2.86 6.66 31.89 0.21 -2.65 16 7 C -0.13 -2.86 3.43 -10.55 -0.04 -2.90 16 8 H 0.13 2.11 8.13 -2.39 -0.02 2.09 16 9 C 0.52 16.37 4.92 87.66 0.43 16.81 16 10 O -0.58 -22.24 14.56 -3.02 -0.04 -22.28 16 11 N -0.51 -17.48 6.12 -173.54 -1.06 -18.54 16 12 N -0.53 -21.56 6.16 -173.54 -1.07 -22.63 16 13 C 0.55 25.20 5.59 87.65 0.49 25.69 16 14 O -0.57 -28.11 13.73 -3.03 -0.04 -28.15 16 15 C 0.06 2.64 2.78 -13.03 -0.04 2.61 16 16 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 17 C -0.54 -25.99 7.11 25.60 0.18 -25.81 16 18 H 0.07 3.37 7.81 -2.91 -0.02 3.35 16 19 C 0.04 2.20 4.02 84.66 0.34 2.54 16 20 N -0.87 -46.40 10.90 21.45 0.23 -46.16 16 21 Si 0.94 40.89 29.54 68.60 2.03 42.91 16 22 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 25 C -0.04 -1.65 4.51 -19.86 -0.09 -1.74 16 26 C -0.12 -4.94 8.21 22.27 0.18 -4.76 16 27 C -0.15 -5.42 10.05 22.27 0.22 -5.20 16 28 C -0.14 -4.94 10.05 22.27 0.22 -4.71 16 29 C -0.15 -5.89 10.05 22.27 0.22 -5.67 16 30 C -0.09 -3.84 8.20 22.27 0.18 -3.65 16 31 H 0.07 1.71 7.64 -2.38 -0.02 1.69 16 32 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.05 1.47 6.51 -2.39 -0.02 1.45 16 34 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.07 1.82 6.97 -2.39 -0.02 1.80 16 38 H 0.43 13.55 7.99 -213.33 -1.71 11.85 16 39 H 0.43 17.50 7.89 -213.31 -1.68 15.81 16 40 H 0.26 13.72 8.31 -92.71 -0.77 12.95 16 41 H 0.10 4.43 6.94 -2.91 -0.02 4.41 16 42 H 0.13 4.02 8.06 -2.92 -0.02 4.00 16 43 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 44 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 45 H 0.11 5.30 6.06 -2.91 -0.02 5.28 16 Total: -1.00 -65.98 366.56 -0.15 -66.14 By element: Atomic # 1 Polarization: 51.20 SS G_CDS: -2.35 Total: 48.84 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 3.82 Total: -9.44 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -1.90 Total: -87.33 kcal Atomic # 8 Polarization: -59.37 SS G_CDS: -1.75 Total: -61.13 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.91 kcal Total: -65.98 -0.15 -66.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537462240.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.713 kcal (2) G-P(sol) polarization free energy of solvation -65.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds