Wall clock time and date at job start Tue Mar 31 2020 18:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47286 * 2 1 4 4 C 1.50705 * 109.46902 * 239.99911 * 2 1 3 5 5 H 1.07998 * 119.99453 * 245.52411 * 4 2 1 6 6 C 1.37869 * 119.99805 * 65.52100 * 4 2 1 7 7 N 1.31508 * 120.00419 * 5.21877 * 6 4 2 8 8 Si 1.86803 * 119.99735 * 185.21687 * 6 4 2 9 9 H 1.48498 * 109.47524 * 94.99970 * 8 6 4 10 10 H 1.48498 * 109.47285 * 215.00424 * 8 6 4 11 11 H 1.48504 * 109.46930 * 334.99993 * 8 6 4 12 12 N 1.46896 * 109.46896 * 120.00182 * 2 1 3 13 13 C 1.46909 * 110.99891 * 274.99648 * 12 2 1 14 14 C 1.50699 * 109.47126 * 179.97438 * 13 12 2 15 15 O 1.21289 * 120.00093 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00066 * 179.97438 * 14 13 12 17 17 C 1.46681 * 121.33254 * 5.97897 * 16 14 13 18 18 C 1.50806 * 109.67697 * 224.43148 * 17 16 14 19 19 C 1.38838 * 117.80985 * 168.47094 * 18 17 16 20 20 C 1.37957 * 120.50830 * 179.52560 * 19 18 17 21 21 C 1.38270 * 119.71504 * 359.91134 * 20 19 18 22 22 C 1.37908 * 119.82829 * 0.26048 * 21 20 19 23 23 C 1.37669 * 122.34570 * 348.39311 * 18 17 16 24 24 C 1.50629 * 122.87895 * 1.47550 * 23 18 17 25 25 C 1.47228 * 121.33506 * 185.99820 * 16 14 13 26 26 H 1.08995 * 109.76867 * 235.43818 * 25 16 14 27 27 C 1.50697 * 109.76970 * 356.16822 * 25 16 14 28 28 O 1.20831 * 119.99564 * 83.32935 * 27 25 16 29 29 O 1.34232 * 120.00510 * 263.60028 * 27 25 16 30 30 H 1.09001 * 109.47157 * 54.96626 * 1 2 3 31 31 H 1.08998 * 109.47296 * 174.96438 * 1 2 3 32 32 H 1.08998 * 109.46981 * 294.96929 * 1 2 3 33 33 H 0.96999 * 120.00276 * 179.97438 * 7 6 4 34 34 H 1.00902 * 111.00144 * 38.94718 * 12 2 1 35 35 H 1.09000 * 109.46900 * 60.00389 * 13 12 2 36 36 H 1.08996 * 109.46661 * 300.00103 * 13 12 2 37 37 H 1.09005 * 109.43239 * 344.49304 * 17 16 14 38 38 H 1.08997 * 109.43827 * 104.40498 * 17 16 14 39 39 H 1.08002 * 119.73987 * 359.50905 * 19 18 17 40 40 H 1.07998 * 120.14140 * 179.88161 * 20 19 18 41 41 H 1.07996 * 120.08469 * 180.28031 * 21 20 19 42 42 H 1.07994 * 119.71130 * 180.02562 * 22 21 20 43 43 H 1.09003 * 109.24648 * 219.52368 * 24 23 18 44 44 H 1.09006 * 109.16916 * 100.22734 * 24 23 18 45 45 H 0.96698 * 117.00436 * 179.72453 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5776 -1.6376 -1.1338 6 6 1.7956 -0.1768 -2.4795 7 7 1.2227 1.0015 -2.5934 8 14 2.2887 -1.1274 -4.0101 9 1 1.1235 -1.9006 -4.5095 10 1 2.7389 -0.1776 -5.0591 11 1 3.3960 -2.0597 -3.6784 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2226 2.3469 14 6 2.5872 -0.5218 3.5560 15 8 2.8676 -1.6987 3.4703 16 7 2.7282 0.1204 4.7325 17 6 2.2786 1.5061 4.9037 18 6 3.3313 2.2940 5.6422 19 6 3.1962 3.6751 5.6842 20 6 4.1218 4.4494 6.3527 21 6 5.1911 3.8445 6.9872 22 6 5.3283 2.4729 6.9432 23 6 4.4009 1.6910 6.2649 24 6 4.6309 0.2026 6.2365 25 6 3.3399 -0.5405 5.8972 26 1 2.6568 -0.4992 6.7455 27 6 3.6511 -1.9767 5.5630 28 8 4.6738 -2.2538 4.9822 29 8 2.7897 -2.9474 5.9057 30 1 -0.3633 0.5899 -0.8415 31 1 -0.3634 -1.0237 -0.0902 32 1 -0.3633 0.4338 0.9316 33 1 1.0565 1.3771 -3.4721 34 1 1.4494 -1.4979 1.4100 35 1 1.0870 0.6163 2.5525 36 1 2.7589 1.0461 2.1182 37 1 2.1088 1.9558 3.9253 38 1 1.3502 1.5184 5.4745 39 1 2.3601 4.1469 5.1894 40 1 4.0119 5.5234 6.3800 41 1 5.9167 4.4445 7.5161 42 1 6.1640 2.0024 7.4397 43 1 4.9868 -0.1246 7.2134 44 1 5.3858 -0.0286 5.4849 45 1 3.0308 -3.8528 5.6665 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592222166.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:16 Heat of formation + Delta-G solvation = -85.075828 kcal Electronic energy + Delta-G solvation = -28903.019935 eV Core-core repulsion = 24885.614426 eV Total energy + Delta-G solvation = -4017.405509 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.29468 -39.65064 -38.93174 -36.45732 -35.81514 -35.67247 -33.44726 -32.42439 -31.69225 -30.35509 -29.07026 -26.37733 -25.56734 -25.18196 -24.66035 -22.48972 -21.73003 -21.09845 -20.22690 -18.83067 -18.19481 -17.31416 -17.19486 -16.40425 -16.19085 -15.95947 -15.39769 -15.19090 -14.99154 -14.82600 -14.64107 -14.46798 -13.91958 -13.61986 -13.45769 -13.28327 -13.07748 -12.86094 -12.78246 -12.57304 -12.36408 -11.86816 -11.72727 -11.64419 -11.45047 -11.31905 -11.26504 -10.92853 -10.90409 -10.56416 -10.33782 -10.22372 -9.94242 -9.61337 -9.15686 -9.03613 -8.90402 -8.82573 -8.35984 -7.32366 -6.00427 -4.00362 1.04980 1.09414 2.09802 2.66469 2.95440 3.00834 3.34782 3.41319 3.44954 3.47880 4.29007 4.38403 4.46014 4.47848 4.62966 4.69350 4.81150 4.85394 4.97217 5.11492 5.20336 5.26485 5.28489 5.31937 5.33757 5.42386 5.60209 5.70717 5.71785 5.77661 5.81904 6.04447 6.19918 6.23609 6.28242 6.55728 6.70062 6.73527 6.73764 6.96147 7.09809 7.27499 7.57490 7.87739 8.04212 8.14646 8.19891 8.47985 8.56422 9.07100 9.64056 11.09030 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012525 B = 0.003248 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2235.041990 B = 8619.368215 C = 9972.975887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.212 3.788 3 H 0.041 0.959 4 C -0.495 4.495 5 H 0.064 0.936 6 C 0.057 3.943 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.273 1.273 12 N -0.667 5.667 13 C 0.051 3.949 14 C 0.518 3.482 15 O -0.494 6.494 16 N -0.614 5.614 17 C 0.152 3.848 18 C -0.097 4.097 19 C -0.109 4.109 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.117 4.117 23 C -0.064 4.064 24 C -0.088 4.088 25 C 0.158 3.842 26 H 0.106 0.894 27 C 0.497 3.503 28 O -0.503 6.503 29 O -0.517 6.517 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.007 0.993 33 H 0.260 0.740 34 H 0.335 0.665 35 H 0.051 0.949 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.384 5.771 23.925 24.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.104 3.896 3 H 0.059 0.941 4 C -0.534 4.534 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.538 5.538 8 Si 0.724 3.276 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.197 1.197 12 N -0.298 5.298 13 C -0.082 4.082 14 C 0.308 3.692 15 O -0.367 6.367 16 N -0.353 5.353 17 C 0.030 3.970 18 C -0.098 4.098 19 C -0.127 4.127 20 C -0.138 4.138 21 C -0.135 4.135 22 C -0.135 4.135 23 C -0.065 4.065 24 C -0.125 4.125 25 C 0.053 3.947 26 H 0.123 0.877 27 C 0.339 3.661 28 O -0.390 6.390 29 O -0.329 6.329 30 H 0.094 0.906 31 H 0.053 0.947 32 H 0.026 0.974 33 H 0.069 0.931 34 H 0.153 0.847 35 H 0.069 0.931 36 H 0.117 0.883 37 H 0.125 0.875 38 H 0.105 0.895 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.109 0.891 44 H 0.119 0.881 45 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 3.325 5.622 23.457 24.349 hybrid contribution -0.582 -0.670 -0.790 1.188 sum 2.744 4.952 22.666 23.362 Atomic orbital electron populations 1.22408 1.00834 1.00070 0.99090 1.19247 0.89294 0.94848 0.86175 0.94140 1.21119 1.34393 1.08330 0.89516 0.91768 1.24924 0.95494 0.94901 0.99023 1.69930 1.44101 1.16144 1.23637 0.86501 0.78759 0.79747 0.82548 1.20869 1.21372 1.19746 1.60604 1.59083 1.08279 1.01863 1.21806 0.99897 0.96852 0.89599 1.21363 0.76753 0.87740 0.83376 1.90642 1.48893 1.15921 1.81266 1.48230 1.62917 1.14107 1.10023 1.20619 0.95111 0.79533 1.01760 1.19791 0.96445 0.94172 0.99344 1.21046 0.99738 0.92482 0.99453 1.21088 0.94851 0.99917 0.97927 1.21087 0.98147 0.94638 0.99634 1.21133 0.98795 0.93937 0.99663 1.19323 0.94875 0.94601 0.97670 1.20776 0.96888 0.90940 1.03939 1.20570 0.96664 0.87023 0.90440 0.87655 1.22166 0.81263 0.87576 0.75073 1.90715 1.28187 1.83314 1.36761 1.84386 1.51240 1.20684 1.76584 0.90629 0.94719 0.97376 0.93081 0.84704 0.93131 0.88337 0.87502 0.89470 0.85450 0.85775 0.85945 0.85920 0.89075 0.88100 0.73016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 8.96 37.16 0.33 -3.46 16 2 C 0.21 5.26 2.44 -68.86 -0.17 5.09 16 3 H 0.04 1.08 7.78 -51.93 -0.40 0.68 16 4 C -0.49 -13.93 8.77 -34.44 -0.30 -14.23 16 5 H 0.06 1.87 7.82 -52.49 -0.41 1.46 16 6 C 0.06 1.60 5.29 -17.83 -0.09 1.51 16 7 N -0.90 -25.66 12.00 55.43 0.66 -24.99 16 8 Si 0.90 21.87 29.54 -169.99 -5.02 16.84 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.67 -14.73 5.86 -109.22 -0.64 -15.37 16 13 C 0.05 0.89 4.36 -4.97 -0.02 0.87 16 14 C 0.52 8.76 7.67 -10.99 -0.08 8.68 16 15 O -0.49 -10.04 12.33 -23.81 -0.29 -10.33 16 16 N -0.61 -7.94 2.94 -168.16 -0.49 -8.44 16 17 C 0.15 1.47 6.10 -5.04 -0.03 1.44 16 18 C -0.10 -0.94 5.82 -104.56 -0.61 -1.55 16 19 C -0.11 -0.91 9.62 -39.46 -0.38 -1.29 16 20 C -0.12 -0.94 10.05 -39.67 -0.40 -1.34 16 21 C -0.12 -0.92 10.04 -39.69 -0.40 -1.32 16 22 C -0.12 -1.02 9.59 -39.43 -0.38 -1.40 16 23 C -0.06 -0.64 5.76 -104.59 -0.60 -1.25 16 24 C -0.09 -0.92 5.08 -28.03 -0.14 -1.06 16 25 C 0.16 1.87 3.35 -68.80 -0.23 1.64 16 26 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 27 C 0.50 7.30 4.67 36.00 0.17 7.47 16 28 O -0.50 -9.21 15.68 -26.37 -0.41 -9.62 16 29 O -0.52 -6.54 13.27 -44.79 -0.59 -7.13 16 30 H 0.07 1.91 6.85 -51.93 -0.36 1.56 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.01 0.15 7.35 -51.93 -0.38 -0.23 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.34 7.35 8.18 -39.29 -0.32 7.03 16 35 H 0.05 0.78 7.13 -51.93 -0.37 0.41 16 36 H 0.10 1.68 7.73 -51.93 -0.40 1.28 16 37 H 0.11 1.00 6.17 -51.93 -0.32 0.68 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.13 0.83 8.05 -52.49 -0.42 0.40 16 40 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.12 0.85 8.05 -52.49 -0.42 0.43 16 43 H 0.09 0.73 8.11 -51.93 -0.42 0.31 16 44 H 0.10 1.31 7.39 -51.93 -0.38 0.93 16 45 H 0.41 3.88 9.10 45.56 0.41 4.30 16 LS Contribution 369.08 15.07 5.56 5.56 Total: -1.00 -35.18 369.08 -10.02 -45.20 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -5.45 Total: 8.48 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -3.34 Total: -0.20 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: -0.47 Total: -48.79 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -1.30 Total: -27.08 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.18 -10.02 -45.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222166.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.880 kcal (2) G-P(sol) polarization free energy of solvation -35.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds