Wall clock time and date at job start Tue Mar 31 2020 18:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47027 * 2 1 4 4 C 1.50702 * 109.47073 * 120.00234 * 2 1 3 5 5 H 1.07998 * 120.00559 * 119.99649 * 4 2 1 6 6 C 1.37882 * 119.99843 * 300.00062 * 4 2 1 7 7 N 1.31521 * 119.99612 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00134 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47125 * 89.99701 * 8 6 4 10 10 H 1.48501 * 109.46905 * 209.99972 * 8 6 4 11 11 H 1.48503 * 109.47027 * 329.99569 * 8 6 4 12 12 N 1.46897 * 109.47241 * 239.99690 * 2 1 3 13 13 C 1.46906 * 110.99756 * 85.00329 * 12 2 1 14 14 C 1.50702 * 109.46973 * 179.97438 * 13 12 2 15 15 O 1.21278 * 120.00049 * 0.02562 * 14 13 12 16 16 N 1.34782 * 119.99766 * 179.97438 * 14 13 12 17 17 C 1.46688 * 121.34713 * 5.38835 * 16 14 13 18 18 C 1.50809 * 109.66550 * 135.68580 * 17 16 14 19 19 C 1.38842 * 117.79719 * 190.99796 * 18 17 16 20 20 C 1.37951 * 120.50765 * 180.45704 * 19 18 17 21 21 C 1.38267 * 119.72192 * 0.03759 * 20 19 18 22 22 C 1.37913 * 119.82179 * 359.75870 * 21 20 19 23 23 C 1.37679 * 122.35775 * 11.09315 * 18 17 16 24 24 C 1.50604 * 122.87211 * 359.23668 * 23 18 17 25 25 C 1.47238 * 121.34824 * 185.40817 * 16 14 13 26 26 H 1.09002 * 109.81736 * 124.69148 * 25 16 14 27 27 C 1.50705 * 109.77344 * 3.91570 * 25 16 14 28 28 O 1.20816 * 119.99851 * 266.46599 * 27 25 16 29 29 O 1.34230 * 119.99841 * 86.47312 * 27 25 16 30 30 H 1.09002 * 109.47174 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47228 * 300.00223 * 1 2 3 32 32 H 1.09006 * 109.46681 * 59.99874 * 1 2 3 33 33 H 0.97003 * 119.99612 * 179.97438 * 7 6 4 34 34 H 1.00894 * 111.00691 * 321.05329 * 12 2 1 35 35 H 1.08995 * 109.47217 * 60.00130 * 13 12 2 36 36 H 1.09000 * 109.47333 * 299.99994 * 13 12 2 37 37 H 1.08998 * 109.43721 * 255.74717 * 17 16 14 38 38 H 1.08999 * 109.44117 * 15.66893 * 17 16 14 39 39 H 1.08002 * 119.74414 * 0.43567 * 19 18 17 40 40 H 1.08001 * 120.14082 * 180.02562 * 20 19 18 41 41 H 1.07996 * 120.09010 * 179.74121 * 21 20 19 42 42 H 1.07997 * 119.70419 * 180.02562 * 22 21 20 43 43 H 1.09005 * 109.19735 * 259.34218 * 24 23 18 44 44 H 1.08997 * 109.19348 * 140.05387 * 24 23 18 45 45 H 0.96700 * 116.99959 * 180.02562 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9435 0.8302 2.6033 8 14 2.3224 -1.1196 4.0080 9 1 3.6304 -0.5441 4.4119 10 1 1.3443 -0.9490 5.1123 11 1 2.4879 -2.5654 3.7123 12 7 2.0197 -0.6925 -1.1994 13 6 2.0826 0.2226 -2.3469 14 6 2.5886 -0.5216 -3.5557 15 8 2.8689 -1.6984 -3.4699 16 7 2.7288 0.1206 -4.7324 17 6 2.5100 1.5668 -4.8433 18 6 3.6084 2.1842 -5.6719 19 6 3.7022 3.5693 -5.6939 20 6 4.6799 4.1932 -6.4408 21 6 5.5726 3.4329 -7.1735 22 6 5.4830 2.0569 -7.1491 23 6 4.5016 1.4254 -6.3944 24 6 4.4716 -0.0802 -6.4078 25 6 3.1075 -0.6013 -5.9585 26 1 2.3679 -0.4187 -6.7382 27 6 3.1944 -2.0787 -5.6742 28 8 4.2542 -2.5746 -5.3732 29 8 2.0943 -2.8436 -5.7554 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 0.7088 1.1614 3.4844 34 1 1.4496 -1.4979 -1.4101 35 1 2.7589 1.0461 -2.1182 36 1 1.0872 0.6164 -2.5525 37 1 1.5476 1.7524 -5.3203 38 1 2.5134 2.0116 -3.8482 39 1 3.0041 4.1628 -5.1222 40 1 4.7477 5.2710 -6.4533 41 1 6.3377 3.9153 -7.7636 42 1 6.1815 1.4649 -7.7218 43 1 5.2400 -0.4601 -5.7343 44 1 4.6753 -0.4337 -7.4186 45 1 2.1995 -3.7856 -5.5638 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592222167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:19 Heat of formation + Delta-G solvation = -107.442838 kcal Electronic energy + Delta-G solvation = -28884.453939 eV Core-core repulsion = 24866.078524 eV Total energy + Delta-G solvation = -4018.375416 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.33015 -40.53190 -40.11681 -37.71157 -37.22639 -36.93306 -34.62581 -34.08448 -32.47918 -31.42794 -30.46693 -27.52116 -27.19494 -26.44249 -25.95167 -23.20108 -22.70731 -22.21595 -21.92086 -19.93115 -19.28078 -18.62228 -18.18622 -17.98514 -17.39097 -16.90232 -16.78586 -16.46888 -16.22312 -15.84255 -15.78424 -15.61407 -15.01041 -14.87595 -14.69697 -14.42388 -14.18229 -14.05216 -13.84055 -13.60344 -13.52821 -13.42923 -13.09411 -12.87679 -12.75790 -12.55221 -12.47249 -12.42223 -12.16181 -12.14954 -11.96140 -11.91451 -11.53121 -11.20101 -10.86180 -10.48147 -10.07066 -9.62691 -9.51788 -9.02477 -8.11220 -6.20777 0.39888 0.46883 1.00636 1.37944 1.42013 1.42959 1.53874 1.86503 2.03026 2.44172 2.81406 3.17401 3.37766 3.54895 3.62366 3.68750 3.75137 3.90490 4.04442 4.19792 4.29710 4.34949 4.38296 4.39050 4.49913 4.51164 4.70028 4.71644 4.75778 4.80586 4.90205 5.05904 5.09190 5.09768 5.16199 5.37041 5.55684 5.58682 5.64948 5.69628 5.71025 5.80233 6.03234 6.11549 6.26104 6.59223 6.68486 6.89170 6.92920 7.03497 7.48562 8.94074 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012881 B = 0.003180 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.247294 B = 8801.781272 C =10092.191165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.220 3.780 3 H 0.017 0.983 4 C -0.520 4.520 5 H 0.045 0.955 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.956 3.044 9 H -0.277 1.277 10 H -0.279 1.279 11 H -0.276 1.276 12 N -0.684 5.684 13 C 0.054 3.946 14 C 0.517 3.483 15 O -0.539 6.539 16 N -0.604 5.604 17 C 0.146 3.854 18 C -0.109 4.109 19 C -0.114 4.114 20 C -0.123 4.123 21 C -0.121 4.121 22 C -0.126 4.126 23 C -0.083 4.083 24 C -0.079 4.079 25 C 0.155 3.845 26 H 0.142 0.858 27 C 0.497 3.503 28 O -0.547 6.547 29 O -0.514 6.514 30 H 0.026 0.974 31 H 0.066 0.934 32 H 0.036 0.964 33 H 0.263 0.737 34 H 0.334 0.666 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.134 0.866 43 H 0.068 0.932 44 H 0.112 0.888 45 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.455 7.822 -24.969 26.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.112 3.888 3 H 0.035 0.965 4 C -0.559 4.559 5 H 0.063 0.937 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.782 3.218 9 H -0.203 1.203 10 H -0.204 1.204 11 H -0.201 1.201 12 N -0.315 5.315 13 C -0.078 4.078 14 C 0.307 3.693 15 O -0.416 6.416 16 N -0.341 5.341 17 C 0.026 3.974 18 C -0.109 4.109 19 C -0.132 4.132 20 C -0.141 4.141 21 C -0.139 4.139 22 C -0.144 4.144 23 C -0.084 4.084 24 C -0.116 4.116 25 C 0.051 3.949 26 H 0.159 0.841 27 C 0.341 3.659 28 O -0.437 6.437 29 O -0.326 6.326 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.151 0.849 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.136 0.864 38 H 0.128 0.872 39 H 0.164 0.836 40 H 0.164 0.836 41 H 0.161 0.839 42 H 0.152 0.848 43 H 0.086 0.914 44 H 0.130 0.870 45 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 3.419 7.650 -24.601 25.989 hybrid contribution -0.396 -1.164 1.053 1.619 sum 3.023 6.486 -23.549 24.612 Atomic orbital electron populations 1.22254 0.99410 0.99256 1.00750 1.18972 0.90371 0.93010 0.86423 0.96528 1.21422 1.30593 1.12493 0.91400 0.93671 1.25595 0.95405 0.95892 1.01452 1.69968 1.37688 1.23897 1.24074 0.85595 0.78123 0.78869 0.79238 1.20328 1.20415 1.20096 1.60401 1.59155 1.09087 1.02894 1.21812 1.01528 0.96026 0.88468 1.21214 0.76390 0.87347 0.84379 1.90633 1.50800 1.18146 1.82065 1.48200 1.69802 1.09883 1.06228 1.20925 0.98053 0.76405 1.02043 1.19864 0.97551 0.94561 0.98970 1.21295 0.99516 0.92867 0.99563 1.21435 0.94912 1.01236 0.96527 1.21408 0.99569 0.93550 0.99391 1.21345 0.98033 0.95604 0.99391 1.19381 0.96873 0.93813 0.98297 1.20662 0.94831 0.92504 1.03650 1.20932 1.00365 0.84487 0.89086 0.84100 1.22761 0.81243 0.90227 0.71705 1.90667 1.32439 1.75464 1.45172 1.84372 1.38378 1.27231 1.82660 0.95458 0.91528 0.94554 0.92829 0.84859 0.87909 0.90254 0.86447 0.87197 0.83575 0.83622 0.83872 0.84787 0.91402 0.87007 0.71737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.27 8.94 71.98 0.64 -6.63 16 2 C 0.22 10.98 2.57 44.17 0.11 11.10 16 3 H 0.02 0.89 7.80 -2.39 -0.02 0.87 16 4 C -0.52 -29.63 8.84 25.60 0.23 -29.40 16 5 H 0.04 2.68 7.81 -2.91 -0.02 2.66 16 6 C 0.02 0.85 5.30 84.65 0.45 1.30 16 7 N -0.92 -51.83 11.32 21.45 0.24 -51.59 16 8 Si 0.96 44.83 29.54 68.60 2.03 46.85 16 9 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 12 N -0.68 -30.22 5.86 -499.45 -2.92 -33.14 16 13 C 0.05 1.80 4.53 85.56 0.39 2.19 16 14 C 0.52 17.08 7.65 87.66 0.67 17.75 16 15 O -0.54 -22.18 12.47 25.29 0.32 -21.86 16 16 N -0.60 -14.67 2.93 -804.25 -2.36 -17.03 16 17 C 0.15 2.46 6.04 85.63 0.52 2.97 16 18 C -0.11 -1.87 5.82 -19.82 -0.12 -1.98 16 19 C -0.11 -1.59 9.62 22.35 0.22 -1.38 16 20 C -0.12 -1.56 10.05 22.21 0.22 -1.34 16 21 C -0.12 -1.60 10.05 22.20 0.22 -1.38 16 22 C -0.13 -1.97 9.59 22.37 0.21 -1.76 16 23 C -0.08 -1.55 5.76 -19.85 -0.11 -1.66 16 24 C -0.08 -1.62 4.99 29.75 0.15 -1.47 16 25 C 0.16 3.47 3.37 44.03 0.15 3.62 16 26 H 0.14 2.20 8.14 -2.39 -0.02 2.18 16 27 C 0.50 14.52 4.70 71.24 0.33 14.85 16 28 O -0.55 -20.28 15.83 28.92 0.46 -19.82 16 29 O -0.51 -12.98 13.07 -45.47 -0.59 -13.57 16 30 H 0.03 1.23 8.13 -2.39 -0.02 1.21 16 31 H 0.07 3.44 6.07 -2.39 -0.01 3.42 16 32 H 0.04 1.40 7.45 -2.38 -0.02 1.39 16 33 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 34 H 0.33 14.85 8.17 -89.70 -0.73 14.12 16 35 H 0.10 3.30 7.29 -2.39 -0.02 3.28 16 36 H 0.08 2.25 7.44 -2.39 -0.02 2.23 16 37 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.11 1.77 6.19 -2.39 -0.01 1.76 16 39 H 0.15 1.40 8.05 -2.91 -0.02 1.38 16 40 H 0.15 1.16 8.06 -2.91 -0.02 1.14 16 41 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 42 H 0.13 1.67 8.05 -2.91 -0.02 1.65 16 43 H 0.07 1.86 7.36 -2.38 -0.02 1.85 16 44 H 0.11 1.73 8.11 -2.39 -0.02 1.71 16 45 H 0.42 8.22 9.10 -74.06 -0.67 7.55 16 Total: -1.00 -76.43 367.91 1.08 -75.35 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: -0.37 Total: 28.04 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 4.29 Total: 6.78 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -5.04 Total: -101.76 kcal Atomic # 8 Polarization: -55.44 SS G_CDS: 0.18 Total: -55.26 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -76.43 1.08 -75.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.096 kcal (2) G-P(sol) polarization free energy of solvation -76.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds