Wall clock time and date at job start Tue Mar 31 2020 18:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47364 * 2 1 4 4 C 1.50705 * 109.46846 * 240.00127 * 2 1 3 5 5 H 1.07999 * 119.99609 * 275.30965 * 4 2 1 6 6 C 1.37878 * 120.00128 * 95.31921 * 4 2 1 7 7 N 1.31510 * 119.99684 * 186.07325 * 6 4 2 8 8 Si 1.86793 * 119.99953 * 6.06754 * 6 4 2 9 9 H 1.48498 * 109.47245 * 84.61744 * 8 6 4 10 10 H 1.48502 * 109.47217 * 204.61827 * 8 6 4 11 11 H 1.48500 * 109.47412 * 324.61751 * 8 6 4 12 12 N 1.46900 * 109.47338 * 120.00047 * 2 1 3 13 13 C 1.46898 * 111.00141 * 275.00222 * 12 2 1 14 14 C 1.50693 * 109.47208 * 179.97438 * 13 12 2 15 15 O 1.21279 * 120.00183 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00097 * 179.97438 * 14 13 12 17 17 C 1.46682 * 121.34144 * 7.38071 * 16 14 13 18 18 C 1.50809 * 109.67219 * 135.65719 * 17 16 14 19 19 C 1.38834 * 117.79833 * 190.91735 * 18 17 16 20 20 C 1.37959 * 120.50778 * 180.62986 * 19 18 17 21 21 C 1.38262 * 119.71782 * 359.97438 * 20 19 18 22 22 C 1.37906 * 119.82471 * 359.80082 * 21 20 19 23 23 C 1.37674 * 122.35412 * 11.16400 * 18 17 16 24 24 C 1.50606 * 122.87087 * 359.12667 * 23 18 17 25 25 C 1.47240 * 121.34911 * 187.37893 * 16 14 13 26 26 H 1.08997 * 109.81797 * 124.68798 * 25 16 14 27 27 C 1.50697 * 109.77424 * 3.91255 * 25 16 14 28 28 O 1.20823 * 119.99828 * 109.94433 * 27 25 16 29 29 O 1.34228 * 120.00215 * 289.94384 * 27 25 16 30 30 H 1.09000 * 109.46996 * 185.52919 * 1 2 3 31 31 H 1.08998 * 109.46964 * 305.52939 * 1 2 3 32 32 H 1.09004 * 109.46727 * 65.52844 * 1 2 3 33 33 H 0.97004 * 120.00086 * 179.97438 * 7 6 4 34 34 H 1.00905 * 110.99542 * 38.94972 * 12 2 1 35 35 H 1.08997 * 109.47512 * 59.99369 * 13 12 2 36 36 H 1.09001 * 109.46530 * 299.99617 * 13 12 2 37 37 H 1.09004 * 109.44120 * 15.59224 * 17 16 14 38 38 H 1.09007 * 109.40481 * 255.70234 * 17 16 14 39 39 H 1.07997 * 119.74893 * 0.60051 * 19 18 17 40 40 H 1.08004 * 120.14297 * 179.97438 * 20 19 18 41 41 H 1.07999 * 120.09076 * 179.82642 * 21 20 19 42 42 H 1.07997 * 119.70991 * 180.08132 * 22 21 20 43 43 H 1.09000 * 109.19446 * 259.41422 * 24 23 18 44 44 H 1.08995 * 109.16299 * 140.10169 * 24 23 18 45 45 H 0.96706 * 117.00168 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1306 -1.7859 -1.2307 6 6 2.3664 0.0127 -2.3559 7 7 2.6900 -0.6122 -3.4669 8 14 2.3593 1.8798 -2.3026 9 1 3.6576 2.3648 -1.7694 10 1 2.1568 2.4135 -3.6736 11 1 1.2577 2.3458 -1.4225 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5874 -0.5219 3.5559 15 8 2.8670 -1.6989 3.4704 16 7 2.7283 0.1204 4.7325 17 6 2.2512 1.4957 4.9129 18 6 1.5286 1.6135 6.2313 19 6 0.8083 2.7755 6.4732 20 6 0.1367 2.9476 7.6660 21 6 0.1814 1.9548 8.6272 22 6 0.8927 0.7982 8.3861 23 6 1.5679 0.6207 7.1843 24 6 2.3159 -0.6716 6.9881 25 6 3.3673 -0.5301 5.8885 26 1 4.1950 0.0823 6.2463 27 6 3.8754 -1.8919 5.4908 28 8 5.0640 -2.0929 5.4088 29 8 3.0077 -2.8816 5.2275 30 1 -0.3633 -1.0229 0.0990 31 1 -0.3633 0.5972 0.8363 32 1 -0.3633 0.4257 -0.9354 33 1 2.9248 -0.1036 -4.2588 34 1 1.4495 -1.4979 1.4100 35 1 1.0872 0.6163 2.5525 36 1 2.7589 1.0461 2.1182 37 1 1.5701 1.7528 4.1016 38 1 3.1012 2.1781 4.9027 39 1 0.7737 3.5507 5.7221 40 1 -0.4215 3.8541 7.8482 41 1 -0.3397 2.0845 9.5642 42 1 0.9253 0.0234 9.1377 43 1 1.6108 -1.4553 6.7112 44 1 2.8079 -0.9455 7.9213 45 1 3.3810 -3.7375 4.9760 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592222168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:24 Heat of formation + Delta-G solvation = -78.741640 kcal Electronic energy + Delta-G solvation = -29032.397774 eV Core-core repulsion = 25015.266935 eV Total energy + Delta-G solvation = -4017.130838 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.31146 -39.72750 -38.98986 -36.49225 -35.93963 -35.71905 -33.59955 -32.37273 -31.76665 -30.58719 -29.60303 -26.48199 -25.62287 -25.24345 -24.69446 -22.59052 -21.81151 -21.16153 -20.10484 -19.28534 -17.73289 -17.47325 -17.29165 -16.82286 -16.36054 -15.91840 -15.53816 -15.28305 -15.17621 -14.97778 -14.47225 -14.22702 -14.19974 -13.75859 -13.54653 -13.44202 -13.26781 -12.87654 -12.72634 -12.53888 -12.44997 -12.28808 -11.98561 -11.95963 -11.57844 -11.43921 -11.34223 -11.17491 -11.09648 -10.79048 -10.43362 -10.22048 -9.80080 -9.58566 -9.23704 -9.15607 -8.98619 -8.88639 -8.52183 -7.45373 -6.05496 -4.02796 0.95991 1.00009 1.99741 2.61651 2.91400 3.06030 3.26336 3.32005 3.34945 3.35903 4.21196 4.28881 4.35468 4.40388 4.54402 4.56319 4.73100 4.77297 4.87936 5.00131 5.04739 5.11179 5.21522 5.27230 5.33217 5.37656 5.54490 5.60334 5.61890 5.63009 5.77145 5.96821 6.10968 6.14231 6.14794 6.19622 6.31953 6.53333 6.61250 6.68247 6.72388 7.08886 7.10747 7.64533 7.86423 8.04590 8.12989 8.31152 8.64815 9.04433 9.56168 11.08255 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013172 B = 0.003476 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.235442 B = 8052.603665 C = 9505.349821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.181 3.819 3 H 0.038 0.962 4 C -0.492 4.492 5 H 0.078 0.922 6 C 0.070 3.930 7 N -0.898 5.898 8 Si 0.876 3.124 9 H -0.275 1.275 10 H -0.289 1.289 11 H -0.269 1.269 12 N -0.658 5.658 13 C 0.044 3.956 14 C 0.516 3.484 15 O -0.487 6.487 16 N -0.617 5.617 17 C 0.151 3.849 18 C -0.095 4.095 19 C -0.110 4.110 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.066 4.066 24 C -0.093 4.093 25 C 0.157 3.843 26 H 0.118 0.882 27 C 0.505 3.495 28 O -0.524 6.524 29 O -0.490 6.490 30 H 0.047 0.953 31 H 0.018 0.982 32 H 0.055 0.945 33 H 0.264 0.736 34 H 0.339 0.661 35 H 0.050 0.950 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.099 0.901 44 H 0.091 0.909 45 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.253 7.317 26.748 28.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.073 3.927 3 H 0.055 0.945 4 C -0.530 4.530 5 H 0.096 0.904 6 C -0.132 4.132 7 N -0.537 5.537 8 Si 0.703 3.297 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.194 1.194 12 N -0.290 5.290 13 C -0.088 4.088 14 C 0.305 3.695 15 O -0.360 6.360 16 N -0.356 5.356 17 C 0.029 3.971 18 C -0.096 4.096 19 C -0.129 4.129 20 C -0.138 4.138 21 C -0.136 4.136 22 C -0.135 4.135 23 C -0.066 4.066 24 C -0.131 4.131 25 C 0.052 3.948 26 H 0.135 0.865 27 C 0.348 3.652 28 O -0.413 6.413 29 O -0.301 6.301 30 H 0.066 0.934 31 H 0.037 0.963 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.158 0.842 35 H 0.067 0.933 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.105 0.895 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.117 0.883 44 H 0.109 0.891 45 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -4.214 7.055 26.360 27.612 hybrid contribution -0.731 0.811 0.068 1.093 sum -4.945 7.866 26.428 28.014 Atomic orbital electron populations 1.22669 1.00763 1.00094 0.99543 1.19716 0.89517 0.94636 0.88784 0.94452 1.20830 1.42741 0.95838 0.93602 0.90421 1.24983 0.94813 0.98044 0.95349 1.69891 1.46696 1.35668 1.01398 0.86905 0.78822 0.86813 0.77151 1.20107 1.21472 1.19356 1.60762 1.59011 1.08078 1.01156 1.21913 0.99862 0.97052 0.90009 1.21216 0.77241 0.87664 0.83343 1.90705 1.48356 1.15072 1.81817 1.48220 1.61570 1.15359 1.10483 1.20593 0.98604 0.82574 0.95378 1.19789 0.99314 0.94769 0.95744 1.21042 0.97148 0.96861 0.97802 1.21090 0.99584 0.99278 0.93818 1.21093 0.99146 0.93922 0.99400 1.21148 0.97803 0.97990 0.96575 1.19343 0.98522 0.94896 0.93873 1.20872 0.97548 0.96321 0.98356 1.21001 0.96809 0.89606 0.87380 0.86480 1.22233 0.84134 0.86572 0.72262 1.90727 1.17858 1.83009 1.49677 1.84502 1.42514 1.23533 1.79516 0.93363 0.96253 0.92638 0.92622 0.84234 0.93275 0.88462 0.87750 0.89459 0.85522 0.85794 0.85937 0.85913 0.88292 0.89082 0.73432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.46 9.15 37.16 0.34 -3.12 16 2 C 0.18 4.15 2.26 -68.86 -0.16 3.99 16 3 H 0.04 0.86 4.89 -51.93 -0.25 0.60 16 4 C -0.49 -13.83 9.19 -34.44 -0.32 -14.14 16 5 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 6 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 7 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 8 Si 0.88 21.08 27.02 -169.99 -4.59 16.49 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.03 6.78 56.52 0.38 -5.64 16 12 N -0.66 -13.71 5.86 -109.22 -0.64 -14.35 16 13 C 0.04 0.71 4.60 -4.98 -0.02 0.69 16 14 C 0.52 8.15 7.63 -10.99 -0.08 8.07 16 15 O -0.49 -9.13 11.46 -20.36 -0.23 -9.36 16 16 N -0.62 -7.50 2.93 -168.14 -0.49 -7.99 16 17 C 0.15 1.36 6.03 -5.04 -0.03 1.33 16 18 C -0.10 -0.83 5.82 -104.55 -0.61 -1.44 16 19 C -0.11 -0.83 9.62 -39.46 -0.38 -1.21 16 20 C -0.12 -0.83 10.05 -39.67 -0.40 -1.23 16 21 C -0.12 -0.82 10.04 -39.69 -0.40 -1.22 16 22 C -0.12 -0.89 9.59 -39.43 -0.38 -1.27 16 23 C -0.07 -0.58 5.76 -104.60 -0.60 -1.19 16 24 C -0.09 -0.83 5.18 -28.04 -0.15 -0.98 16 25 C 0.16 1.78 3.32 -68.79 -0.23 1.55 16 26 H 0.12 1.18 8.13 -51.93 -0.42 0.76 16 27 C 0.51 7.29 5.24 36.00 0.19 7.48 16 28 O -0.52 -9.26 17.85 -19.54 -0.35 -9.61 16 29 O -0.49 -6.56 10.10 -47.58 -0.48 -7.04 16 30 H 0.05 0.95 8.03 -51.93 -0.42 0.53 16 31 H 0.02 0.32 7.60 -51.93 -0.39 -0.07 16 32 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 34 H 0.34 6.98 8.10 -39.29 -0.32 6.67 16 35 H 0.05 0.69 6.71 -51.93 -0.35 0.34 16 36 H 0.10 1.49 8.06 -51.93 -0.42 1.07 16 37 H 0.10 0.86 6.19 -51.93 -0.32 0.54 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.13 0.72 8.05 -52.49 -0.42 0.30 16 40 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 41 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 42 H 0.12 0.71 8.05 -52.49 -0.42 0.29 16 43 H 0.10 0.98 7.52 -51.93 -0.39 0.59 16 44 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 45 H 0.41 4.34 9.10 45.56 0.41 4.75 16 LS Contribution 366.44 15.07 5.52 5.52 Total: -1.00 -35.85 366.44 -9.21 -45.06 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -5.40 Total: 8.81 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -3.32 Total: -0.77 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -0.36 Total: -49.10 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -1.06 Total: -26.01 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.59 Total: 16.49 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.85 -9.21 -45.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.680 kcal (2) G-P(sol) polarization free energy of solvation -35.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds