Wall clock time and date at job start Tue Mar 31 2020 18:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47364 * 2 1 4 4 C 1.50705 * 109.46846 * 240.00127 * 2 1 3 5 5 H 1.07999 * 119.99609 * 275.30965 * 4 2 1 6 6 C 1.37878 * 120.00128 * 95.31921 * 4 2 1 7 7 N 1.31510 * 119.99684 * 186.07325 * 6 4 2 8 8 Si 1.86793 * 119.99953 * 6.06754 * 6 4 2 9 9 H 1.48498 * 109.47245 * 84.61744 * 8 6 4 10 10 H 1.48502 * 109.47217 * 204.61827 * 8 6 4 11 11 H 1.48500 * 109.47412 * 324.61751 * 8 6 4 12 12 N 1.46900 * 109.47338 * 120.00047 * 2 1 3 13 13 C 1.46898 * 111.00141 * 275.00222 * 12 2 1 14 14 C 1.50693 * 109.47208 * 179.97438 * 13 12 2 15 15 O 1.21279 * 120.00183 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00097 * 179.97438 * 14 13 12 17 17 C 1.46682 * 121.34144 * 7.38071 * 16 14 13 18 18 C 1.50809 * 109.67219 * 135.65719 * 17 16 14 19 19 C 1.38834 * 117.79833 * 190.91735 * 18 17 16 20 20 C 1.37959 * 120.50778 * 180.62986 * 19 18 17 21 21 C 1.38262 * 119.71782 * 359.97438 * 20 19 18 22 22 C 1.37906 * 119.82471 * 359.80082 * 21 20 19 23 23 C 1.37674 * 122.35412 * 11.16400 * 18 17 16 24 24 C 1.50606 * 122.87087 * 359.12667 * 23 18 17 25 25 C 1.47240 * 121.34911 * 187.37893 * 16 14 13 26 26 H 1.08997 * 109.81797 * 124.68798 * 25 16 14 27 27 C 1.50697 * 109.77424 * 3.91255 * 25 16 14 28 28 O 1.20823 * 119.99828 * 109.94433 * 27 25 16 29 29 O 1.34228 * 120.00215 * 289.94384 * 27 25 16 30 30 H 1.09000 * 109.46996 * 185.52919 * 1 2 3 31 31 H 1.08998 * 109.46964 * 305.52939 * 1 2 3 32 32 H 1.09004 * 109.46727 * 65.52844 * 1 2 3 33 33 H 0.97004 * 120.00086 * 179.97438 * 7 6 4 34 34 H 1.00905 * 110.99542 * 38.94972 * 12 2 1 35 35 H 1.08997 * 109.47512 * 59.99369 * 13 12 2 36 36 H 1.09001 * 109.46530 * 299.99617 * 13 12 2 37 37 H 1.09004 * 109.44120 * 15.59224 * 17 16 14 38 38 H 1.09007 * 109.40481 * 255.70234 * 17 16 14 39 39 H 1.07997 * 119.74893 * 0.60051 * 19 18 17 40 40 H 1.08004 * 120.14297 * 179.97438 * 20 19 18 41 41 H 1.07999 * 120.09076 * 179.82642 * 21 20 19 42 42 H 1.07997 * 119.70991 * 180.08132 * 22 21 20 43 43 H 1.09000 * 109.19446 * 259.41422 * 24 23 18 44 44 H 1.08995 * 109.16299 * 140.10169 * 24 23 18 45 45 H 0.96706 * 117.00168 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1306 -1.7859 -1.2307 6 6 2.3664 0.0127 -2.3559 7 7 2.6900 -0.6122 -3.4669 8 14 2.3593 1.8798 -2.3026 9 1 3.6576 2.3648 -1.7694 10 1 2.1568 2.4135 -3.6736 11 1 1.2577 2.3458 -1.4225 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5874 -0.5219 3.5559 15 8 2.8670 -1.6989 3.4704 16 7 2.7283 0.1204 4.7325 17 6 2.2512 1.4957 4.9129 18 6 1.5286 1.6135 6.2313 19 6 0.8083 2.7755 6.4732 20 6 0.1367 2.9476 7.6660 21 6 0.1814 1.9548 8.6272 22 6 0.8927 0.7982 8.3861 23 6 1.5679 0.6207 7.1843 24 6 2.3159 -0.6716 6.9881 25 6 3.3673 -0.5301 5.8885 26 1 4.1950 0.0823 6.2463 27 6 3.8754 -1.8919 5.4908 28 8 5.0640 -2.0929 5.4088 29 8 3.0077 -2.8816 5.2275 30 1 -0.3633 -1.0229 0.0990 31 1 -0.3633 0.5972 0.8363 32 1 -0.3633 0.4257 -0.9354 33 1 2.9248 -0.1036 -4.2588 34 1 1.4495 -1.4979 1.4100 35 1 1.0872 0.6163 2.5525 36 1 2.7589 1.0461 2.1182 37 1 1.5701 1.7528 4.1016 38 1 3.1012 2.1781 4.9027 39 1 0.7737 3.5507 5.7221 40 1 -0.4215 3.8541 7.8482 41 1 -0.3397 2.0845 9.5642 42 1 0.9253 0.0234 9.1377 43 1 1.6108 -1.4553 6.7112 44 1 2.8079 -0.9455 7.9213 45 1 3.3810 -3.7375 4.9760 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592222168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:23 Heat of formation + Delta-G solvation = -104.146559 kcal Electronic energy + Delta-G solvation = -29033.499414 eV Core-core repulsion = 25015.266935 eV Total energy + Delta-G solvation = -4018.232478 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.28081 -40.57027 -40.07405 -37.75590 -37.17272 -36.91975 -34.58639 -34.16884 -32.45609 -31.79411 -30.72519 -27.53491 -27.21237 -26.40986 -25.78934 -23.25374 -22.76134 -21.94011 -21.87698 -20.34212 -19.14207 -18.78923 -18.37001 -18.06139 -17.25400 -16.72808 -16.66535 -16.59558 -16.06041 -15.93448 -15.66506 -15.61643 -15.21179 -15.05464 -14.52670 -14.44700 -14.24662 -14.04475 -13.92680 -13.74975 -13.67051 -13.46012 -13.22923 -12.92712 -12.85925 -12.63378 -12.55460 -12.35731 -12.23188 -12.00871 -11.93748 -11.74248 -11.51516 -11.24473 -10.79677 -10.62694 -10.02167 -9.60533 -9.50566 -9.01665 -8.23817 -6.27250 0.41313 0.48430 0.93367 1.36799 1.40700 1.47553 1.49961 1.84627 2.09758 2.38609 2.83063 3.05960 3.44690 3.51975 3.58103 3.68715 3.71562 3.87131 4.04922 4.22233 4.29622 4.31161 4.38011 4.41298 4.50617 4.52866 4.57029 4.70910 4.71525 4.74710 4.79975 4.83803 5.02841 5.10720 5.12004 5.17656 5.46165 5.57108 5.59655 5.66531 5.66976 5.68438 5.96213 6.10143 6.16644 6.64316 6.65930 6.78619 6.97123 7.02466 7.36575 8.94340 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013172 B = 0.003476 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.235442 B = 8052.603665 C = 9505.349821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.187 3.813 3 H 0.048 0.952 4 C -0.502 4.502 5 H 0.022 0.978 6 C 0.003 3.997 7 N -0.955 5.955 8 Si 0.949 3.051 9 H -0.268 1.268 10 H -0.289 1.289 11 H -0.232 1.232 12 N -0.683 5.683 13 C 0.046 3.954 14 C 0.512 3.488 15 O -0.530 6.530 16 N -0.608 5.608 17 C 0.145 3.855 18 C -0.107 4.107 19 C -0.115 4.115 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.083 4.083 24 C -0.082 4.082 25 C 0.156 3.844 26 H 0.132 0.868 27 C 0.504 3.496 28 O -0.565 6.565 29 O -0.491 6.491 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.265 0.735 34 H 0.336 0.664 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.136 0.864 43 H 0.086 0.914 44 H 0.111 0.889 45 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.841 11.025 29.437 32.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.079 3.921 3 H 0.066 0.934 4 C -0.541 4.541 5 H 0.040 0.960 6 C -0.193 4.193 7 N -0.596 5.596 8 Si 0.772 3.228 9 H -0.194 1.194 10 H -0.216 1.216 11 H -0.155 1.155 12 N -0.315 5.315 13 C -0.086 4.086 14 C 0.301 3.699 15 O -0.406 6.406 16 N -0.346 5.346 17 C 0.025 3.975 18 C -0.108 4.108 19 C -0.133 4.133 20 C -0.142 4.142 21 C -0.141 4.141 22 C -0.142 4.142 23 C -0.083 4.083 24 C -0.120 4.120 25 C 0.052 3.948 26 H 0.150 0.850 27 C 0.349 3.651 28 O -0.457 6.457 29 O -0.301 6.301 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.154 0.846 35 H 0.101 0.899 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.125 0.875 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.160 0.840 42 H 0.154 0.846 43 H 0.104 0.896 44 H 0.129 0.871 45 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -5.840 10.789 29.114 31.593 hybrid contribution -0.253 -0.451 -0.664 0.842 sum -6.093 10.338 28.450 30.877 Atomic orbital electron populations 1.22506 0.98423 1.00678 1.00778 1.19513 0.91072 0.94144 0.87379 0.93420 1.21164 1.42651 0.93771 0.96486 0.95975 1.26001 0.94398 1.04346 0.94571 1.70083 1.48858 1.38183 1.02486 0.85729 0.80173 0.79120 0.77793 1.19377 1.21568 1.15526 1.60427 1.59421 1.09087 1.02564 1.21956 1.02001 0.96193 0.88417 1.21186 0.77148 0.87246 0.84318 1.90696 1.50363 1.16774 1.82755 1.48167 1.60487 1.16443 1.09491 1.20896 0.99711 0.80724 0.96219 1.19830 1.00014 0.95467 0.95478 1.21276 0.96658 0.96805 0.98543 1.21421 0.99268 0.99978 0.93536 1.21407 0.98796 0.93586 1.00279 1.21352 0.97645 0.98764 0.96469 1.19398 0.99402 0.94799 0.94745 1.20782 0.96618 0.96496 0.98104 1.21186 0.98063 0.87861 0.87728 0.85032 1.22872 0.83630 0.87610 0.71031 1.90699 1.19519 1.83856 1.51650 1.84491 1.42519 1.24091 1.79030 0.93886 0.92079 0.93561 0.92647 0.84565 0.89944 0.87228 0.86548 0.87511 0.83667 0.83817 0.84042 0.84601 0.89595 0.87100 0.72564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.24 9.15 71.98 0.66 -5.58 16 2 C 0.19 8.32 2.26 44.17 0.10 8.42 16 3 H 0.05 2.02 4.89 -2.39 -0.01 2.01 16 4 C -0.50 -29.05 9.19 25.60 0.24 -28.81 16 5 H 0.02 1.47 8.06 -2.91 -0.02 1.44 16 6 C 0.00 0.18 5.47 84.66 0.46 0.64 16 7 N -0.96 -60.84 13.96 21.45 0.30 -60.54 16 8 Si 0.95 42.76 27.02 68.60 1.85 44.62 16 9 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 10 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.23 -9.06 6.78 99.48 0.67 -8.38 16 12 N -0.68 -28.00 5.86 -499.47 -2.93 -30.92 16 13 C 0.05 1.37 4.60 85.56 0.39 1.76 16 14 C 0.51 15.50 7.63 87.65 0.67 16.17 16 15 O -0.53 -20.03 11.46 21.75 0.25 -19.78 16 16 N -0.61 -13.55 2.93 -804.27 -2.36 -15.91 16 17 C 0.15 2.12 6.03 85.63 0.52 2.64 16 18 C -0.11 -1.53 5.82 -19.82 -0.12 -1.65 16 19 C -0.11 -1.29 9.62 22.35 0.21 -1.07 16 20 C -0.12 -1.27 10.05 22.21 0.22 -1.05 16 21 C -0.12 -1.30 10.04 22.20 0.22 -1.08 16 22 C -0.12 -1.55 9.59 22.37 0.21 -1.33 16 23 C -0.08 -1.26 5.76 -19.85 -0.11 -1.37 16 24 C -0.08 -1.33 5.18 29.75 0.15 -1.17 16 25 C 0.16 3.34 3.32 44.03 0.15 3.49 16 26 H 0.13 2.44 8.13 -2.39 -0.02 2.42 16 27 C 0.50 14.63 5.24 71.24 0.37 15.00 16 28 O -0.57 -20.47 17.85 22.73 0.41 -20.07 16 29 O -0.49 -13.44 10.10 -43.43 -0.44 -13.88 16 30 H 0.04 1.64 8.03 -2.39 -0.02 1.62 16 31 H 0.06 1.81 7.60 -2.39 -0.02 1.79 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 34 H 0.34 13.95 8.10 -89.69 -0.73 13.23 16 35 H 0.08 1.92 6.71 -2.39 -0.02 1.90 16 36 H 0.11 2.98 8.06 -2.39 -0.02 2.96 16 37 H 0.12 1.41 6.19 -2.39 -0.01 1.39 16 38 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.15 1.01 8.05 -2.91 -0.02 0.99 16 40 H 0.14 0.85 8.06 -2.91 -0.02 0.82 16 41 H 0.14 0.89 8.06 -2.91 -0.02 0.87 16 42 H 0.14 1.22 8.05 -2.91 -0.02 1.20 16 43 H 0.09 1.62 7.52 -2.39 -0.02 1.60 16 44 H 0.11 1.30 8.11 -2.39 -0.02 1.28 16 45 H 0.41 9.37 9.10 -74.05 -0.67 8.70 16 Total: -1.00 -82.12 366.44 1.04 -81.07 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: -0.40 Total: 30.42 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 4.36 Total: 5.00 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -4.99 Total: -107.38 kcal Atomic # 8 Polarization: -53.94 SS G_CDS: 0.22 Total: -53.73 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.85 Total: 44.62 kcal Total: -82.12 1.04 -81.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.075 kcal (2) G-P(sol) polarization free energy of solvation -82.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds