Wall clock time and date at job start Tue Mar 31 2020 18:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47041 * 2 1 4 4 C 1.53000 * 109.47000 * 239.99883 * 2 1 3 5 5 C 1.50690 * 109.47251 * 176.02281 * 4 2 1 6 6 O 1.21294 * 120.00243 * 354.69967 * 5 4 2 7 7 N 1.34782 * 120.00279 * 174.70125 * 5 4 2 8 8 C 1.37097 * 120.00129 * 180.02562 * 7 5 4 9 9 H 1.08001 * 119.99748 * 22.55277 * 8 7 5 10 10 C 1.38944 * 119.99895 * 202.56064 * 8 7 5 11 11 N 1.31414 * 120.00180 * 15.47177 * 10 8 7 12 12 Si 1.86801 * 120.00215 * 195.47157 * 10 8 7 13 13 H 1.48507 * 109.46594 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47132 * 119.99857 * 12 10 8 15 15 H 1.48497 * 109.47372 * 240.00021 * 12 10 8 16 16 C 1.46490 * 119.99803 * 359.97438 * 7 5 4 17 17 C 1.50707 * 109.47465 * 84.75722 * 16 7 5 18 18 O 1.20830 * 119.99221 * 0.02562 * 17 16 7 19 19 O 1.34224 * 120.00667 * 179.97438 * 17 16 7 20 20 N 1.46897 * 109.46683 * 120.00043 * 2 1 3 21 21 C 1.47908 * 111.00257 * 49.26323 * 20 2 1 22 22 C 1.54603 * 102.61890 * 265.48007 * 21 20 2 23 23 C 1.51564 * 102.84036 * 334.46935 * 22 21 20 24 24 C 1.37922 * 131.56713 * 196.34653 * 23 22 21 25 25 C 1.38303 * 120.08438 * 179.28160 * 24 23 22 26 26 C 1.38304 * 119.88155 * 359.97438 * 25 24 23 27 27 C 1.37906 * 120.26543 * 0.13143 * 26 25 24 28 28 C 1.38967 * 107.95495 * 15.92880 * 23 22 21 29 29 H 1.09002 * 109.47045 * 294.71866 * 1 2 3 30 30 H 1.09001 * 109.47211 * 54.70726 * 1 2 3 31 31 H 1.08996 * 109.47730 * 174.71479 * 1 2 3 32 32 H 1.08997 * 109.46781 * 296.02308 * 4 2 1 33 33 H 1.09003 * 109.47173 * 56.02074 * 4 2 1 34 34 H 0.97000 * 120.00056 * 180.02562 * 11 10 8 35 35 H 1.09001 * 109.47362 * 204.76278 * 16 7 5 36 36 H 1.09001 * 109.47250 * 324.76047 * 16 7 5 37 37 H 0.96692 * 117.00195 * 180.02562 * 19 17 16 38 38 H 1.08997 * 110.77859 * 23.76728 * 21 20 2 39 39 H 1.09005 * 110.78115 * 147.20536 * 21 20 2 40 40 H 1.08996 * 110.73789 * 216.12645 * 22 21 20 41 41 H 1.09003 * 110.88798 * 92.87810 * 22 21 20 42 42 H 1.08001 * 119.95543 * 359.27980 * 24 23 22 43 43 H 1.08000 * 120.05888 * 179.97438 * 25 24 23 44 44 H 1.08000 * 119.86594 * 180.14384 * 26 25 24 45 45 H 1.08001 * 119.89858 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5437 -0.6365 -1.2995 6 8 4.1418 0.0240 -0.4767 7 7 4.2241 -1.2948 -2.2589 8 6 5.5921 -1.2181 -2.3044 9 1 6.1483 -0.9602 -1.4152 10 6 6.2630 -1.4720 -3.4943 11 7 5.6033 -1.4847 -4.6308 12 14 8.1028 -1.7954 -3.4787 13 1 8.6058 -1.7249 -2.0832 14 1 8.3728 -3.1454 -4.0352 15 1 8.7923 -0.7723 -4.3052 16 6 3.5018 -2.0930 -3.2524 17 6 3.0489 -1.2017 -4.3801 18 8 3.3038 -0.0209 -4.3564 19 8 2.3632 -1.7198 -5.4112 20 7 2.0196 -0.6925 1.1994 21 6 1.3467 -1.9987 1.3692 22 6 0.1818 -1.6566 2.3264 23 6 0.6981 -0.4367 3.0629 24 6 0.2842 0.1711 4.2297 25 6 0.9488 1.2875 4.7035 26 6 2.0301 1.7936 4.0053 27 6 2.4467 1.1911 2.8369 28 6 1.7798 0.0676 2.3509 29 1 -0.3633 0.4297 0.9335 30 1 -0.3634 0.5937 -0.8388 31 1 -0.3634 -1.0232 -0.0947 32 1 1.7360 -1.7674 -1.2142 33 1 1.6196 -0.2503 -2.1378 34 1 6.0717 -1.6624 -5.4615 35 1 4.1604 -2.8683 -3.6441 36 1 2.6333 -2.5565 -2.7844 37 1 2.0945 -1.1089 -6.1109 38 1 0.9683 -2.3656 0.4152 39 1 2.0205 -2.7246 1.8243 40 1 -0.0017 -2.4772 3.0198 41 1 -0.7226 -1.4159 1.7675 42 1 -0.5601 -0.2254 4.7741 43 1 0.6241 1.7633 5.6170 44 1 2.5504 2.6641 4.3767 45 1 3.2921 1.5910 2.2967 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592225536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:18 Heat of formation + Delta-G solvation = -60.930962 kcal Electronic energy + Delta-G solvation = -29731.292215 eV Core-core repulsion = 25714.933705 eV Total energy + Delta-G solvation = -4016.358509 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.04535 -39.33861 -38.13761 -36.96162 -35.15930 -34.39083 -33.16709 -31.73668 -31.29375 -28.84799 -28.41240 -27.99222 -27.39186 -24.49068 -23.01489 -22.23583 -21.10726 -21.04230 -20.00996 -18.49128 -17.20284 -17.03090 -16.80123 -16.13570 -15.76186 -15.64367 -15.37747 -15.24902 -14.66300 -14.39158 -14.13359 -13.91176 -13.58881 -13.26290 -13.07240 -12.94486 -12.52717 -12.45485 -12.19119 -12.11322 -12.00937 -11.80610 -11.62959 -11.49691 -11.35455 -11.10128 -10.97887 -10.88319 -10.67645 -10.54910 -10.36861 -10.27450 -10.21107 -9.52328 -9.22744 -9.00038 -8.67471 -8.34962 -7.75661 -7.59136 -6.35792 -3.85642 1.43808 1.52599 3.17847 3.27967 3.35272 3.53029 3.73519 3.79138 3.93821 4.15780 4.32901 4.61397 4.73556 4.86078 5.01857 5.08185 5.11561 5.14106 5.23186 5.29936 5.39612 5.48365 5.52552 5.65941 5.69583 5.76766 5.80637 5.83650 5.93066 5.96763 6.01612 6.07095 6.17354 6.24164 6.40078 6.49668 6.50916 6.63285 6.63758 6.67005 6.91873 7.26570 7.54144 7.54922 7.61588 8.12193 8.47334 9.10652 9.20369 9.40240 9.97842 10.73940 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016362 B = 0.003663 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.831305 B = 7643.120151 C = 8615.621505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.107 3.893 3 H 0.092 0.908 4 C -0.131 4.131 5 C 0.477 3.523 6 O -0.552 6.552 7 N -0.443 5.443 8 C -0.296 4.296 9 H 0.104 0.896 10 C 0.027 3.973 11 N -0.890 5.890 12 Si 0.929 3.071 13 H -0.268 1.268 14 H -0.282 1.282 15 H -0.284 1.284 16 C 0.152 3.848 17 C 0.489 3.511 18 O -0.502 6.502 19 O -0.538 6.538 20 N -0.467 5.467 21 C 0.045 3.955 22 C -0.112 4.112 23 C -0.147 4.147 24 C -0.094 4.094 25 C -0.143 4.143 26 C -0.106 4.106 27 C -0.108 4.108 28 C 0.113 3.887 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.268 0.732 35 H 0.121 0.879 36 H 0.073 0.927 37 H 0.390 0.610 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.114 0.886 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.573 -1.936 9.082 16.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.001 3.999 3 H 0.110 0.890 4 C -0.172 4.172 5 C 0.266 3.734 6 O -0.433 6.433 7 N -0.164 5.164 8 C -0.424 4.424 9 H 0.121 0.879 10 C -0.175 4.175 11 N -0.531 5.531 12 Si 0.756 3.244 13 H -0.193 1.193 14 H -0.208 1.208 15 H -0.210 1.210 16 C 0.025 3.975 17 C 0.329 3.671 18 O -0.387 6.387 19 O -0.349 6.349 20 N -0.182 5.182 21 C -0.082 4.082 22 C -0.150 4.150 23 C -0.150 4.150 24 C -0.113 4.113 25 C -0.162 4.162 26 C -0.125 4.125 27 C -0.128 4.128 28 C 0.016 3.984 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.078 0.922 35 H 0.139 0.861 36 H 0.090 0.910 37 H 0.246 0.754 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.132 0.868 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.414 -1.659 9.501 15.720 hybrid contribution 0.005 0.333 -0.876 0.937 sum -12.409 -1.326 8.625 15.170 Atomic orbital electron populations 1.22717 0.97132 1.02202 1.02464 1.21483 0.91506 0.98951 0.87982 0.88988 1.21792 0.96477 1.01139 0.97793 1.19846 0.87966 0.81450 0.84186 1.90533 1.69929 1.41926 1.40888 1.43369 1.06263 1.42694 1.24097 1.19684 0.80018 1.45854 0.96796 0.87865 1.25237 1.00364 0.97550 0.94300 1.69647 1.36744 1.48880 0.97820 0.85810 0.82353 0.77697 0.78510 1.19266 1.20759 1.20995 1.20513 0.96630 0.93345 0.86977 1.23841 0.72463 0.88501 0.82277 1.90601 1.51542 1.18477 1.78072 1.84523 1.69673 1.47152 1.33549 1.60082 1.55028 1.02298 1.00816 1.23202 0.93644 0.91954 0.99373 1.21875 0.99443 0.95516 0.98153 1.21036 0.96842 0.99321 0.97820 1.20302 0.99876 0.96028 0.95098 1.20953 0.97459 0.97275 1.00497 1.20916 0.96986 0.99729 0.94863 1.20681 1.00198 0.95484 0.96460 1.19564 0.92706 0.93851 0.92279 0.92046 0.91886 0.92028 0.90415 0.89742 0.92186 0.86109 0.90962 0.75367 0.89608 0.89528 0.90305 0.89862 0.86756 0.86290 0.85959 0.85280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.34 7.44 37.16 0.28 -2.06 16 2 C 0.11 1.75 1.82 -67.71 -0.12 1.63 16 3 H 0.09 1.73 7.82 -51.93 -0.41 1.32 16 4 C -0.13 -2.34 3.86 -27.89 -0.11 -2.45 16 5 C 0.48 11.34 7.26 -10.99 -0.08 11.26 16 6 O -0.55 -14.93 15.12 5.55 0.08 -14.85 16 7 N -0.44 -11.02 2.16 -116.10 -0.25 -11.27 16 8 C -0.30 -8.15 9.26 -14.94 -0.14 -8.28 16 9 H 0.10 3.00 7.43 -52.49 -0.39 2.61 16 10 C 0.03 0.71 4.98 -17.47 -0.09 0.62 16 11 N -0.89 -23.60 8.87 55.50 0.49 -23.10 16 12 Si 0.93 20.94 29.58 -169.99 -5.03 15.91 16 13 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 14 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 16 C 0.15 3.25 4.98 -5.20 -0.03 3.23 16 17 C 0.49 10.71 5.97 36.01 0.22 10.93 16 18 O -0.50 -13.01 16.49 -18.75 -0.31 -13.32 16 19 O -0.54 -9.54 13.42 -39.24 -0.53 -10.07 16 20 N -0.47 -7.75 4.24 -161.49 -0.69 -8.44 16 21 C 0.05 0.60 6.26 -2.43 -0.02 0.58 16 22 C -0.11 -1.25 6.10 -26.62 -0.16 -1.41 16 23 C -0.15 -1.96 5.33 -104.04 -0.55 -2.51 16 24 C -0.09 -1.11 10.03 -39.67 -0.40 -1.51 16 25 C -0.14 -1.64 10.06 -39.53 -0.40 -2.04 16 26 C -0.11 -1.35 10.02 -39.68 -0.40 -1.75 16 27 C -0.11 -1.69 10.07 -39.27 -0.40 -2.08 16 28 C 0.11 1.78 5.05 -83.40 -0.42 1.36 16 29 H 0.06 0.77 6.06 -51.93 -0.31 0.46 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.67 5.77 -51.93 -0.30 0.37 16 32 H 0.08 1.19 5.55 -51.93 -0.29 0.90 16 33 H 0.08 1.49 7.83 -51.93 -0.41 1.09 16 34 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.12 2.70 6.68 -51.93 -0.35 2.36 16 36 H 0.07 1.23 6.51 -51.93 -0.34 0.90 16 37 H 0.39 5.35 9.10 45.56 0.41 5.76 16 38 H 0.09 1.01 5.34 -51.93 -0.28 0.73 16 39 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.84 5.99 -51.93 -0.31 0.52 16 42 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 45 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 358.74 15.07 5.41 5.41 Total: -1.00 -34.24 358.74 -8.69 -42.92 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -5.06 Total: 11.29 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -2.81 Total: 5.51 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: -0.44 Total: -42.81 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -0.75 Total: -38.23 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.24 -8.69 -42.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592225536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.007 kcal (2) G-P(sol) polarization free energy of solvation -34.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds