Wall clock time and date at job start Tue Mar 31 2020 18:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47041 * 2 1 4 4 C 1.53000 * 109.47000 * 239.99883 * 2 1 3 5 5 C 1.50690 * 109.47251 * 176.02281 * 4 2 1 6 6 O 1.21294 * 120.00243 * 354.69967 * 5 4 2 7 7 N 1.34782 * 120.00279 * 174.70125 * 5 4 2 8 8 C 1.37097 * 120.00129 * 180.02562 * 7 5 4 9 9 H 1.08001 * 119.99748 * 22.55277 * 8 7 5 10 10 C 1.38944 * 119.99895 * 202.56064 * 8 7 5 11 11 N 1.31414 * 120.00180 * 15.47177 * 10 8 7 12 12 Si 1.86801 * 120.00215 * 195.47157 * 10 8 7 13 13 H 1.48507 * 109.46594 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47132 * 119.99857 * 12 10 8 15 15 H 1.48497 * 109.47372 * 240.00021 * 12 10 8 16 16 C 1.46490 * 119.99803 * 359.97438 * 7 5 4 17 17 C 1.50707 * 109.47465 * 84.75722 * 16 7 5 18 18 O 1.20830 * 119.99221 * 0.02562 * 17 16 7 19 19 O 1.34224 * 120.00667 * 179.97438 * 17 16 7 20 20 N 1.46897 * 109.46683 * 120.00043 * 2 1 3 21 21 C 1.47908 * 111.00257 * 49.26323 * 20 2 1 22 22 C 1.54603 * 102.61890 * 265.48007 * 21 20 2 23 23 C 1.51564 * 102.84036 * 334.46935 * 22 21 20 24 24 C 1.37922 * 131.56713 * 196.34653 * 23 22 21 25 25 C 1.38303 * 120.08438 * 179.28160 * 24 23 22 26 26 C 1.38304 * 119.88155 * 359.97438 * 25 24 23 27 27 C 1.37906 * 120.26543 * 0.13143 * 26 25 24 28 28 C 1.38967 * 107.95495 * 15.92880 * 23 22 21 29 29 H 1.09002 * 109.47045 * 294.71866 * 1 2 3 30 30 H 1.09001 * 109.47211 * 54.70726 * 1 2 3 31 31 H 1.08996 * 109.47730 * 174.71479 * 1 2 3 32 32 H 1.08997 * 109.46781 * 296.02308 * 4 2 1 33 33 H 1.09003 * 109.47173 * 56.02074 * 4 2 1 34 34 H 0.97000 * 120.00056 * 180.02562 * 11 10 8 35 35 H 1.09001 * 109.47362 * 204.76278 * 16 7 5 36 36 H 1.09001 * 109.47250 * 324.76047 * 16 7 5 37 37 H 0.96692 * 117.00195 * 180.02562 * 19 17 16 38 38 H 1.08997 * 110.77859 * 23.76728 * 21 20 2 39 39 H 1.09005 * 110.78115 * 147.20536 * 21 20 2 40 40 H 1.08996 * 110.73789 * 216.12645 * 22 21 20 41 41 H 1.09003 * 110.88798 * 92.87810 * 22 21 20 42 42 H 1.08001 * 119.95543 * 359.27980 * 24 23 22 43 43 H 1.08000 * 120.05888 * 179.97438 * 25 24 23 44 44 H 1.08000 * 119.86594 * 180.14384 * 26 25 24 45 45 H 1.08001 * 119.89858 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5437 -0.6365 -1.2995 6 8 4.1418 0.0240 -0.4767 7 7 4.2241 -1.2948 -2.2589 8 6 5.5921 -1.2181 -2.3044 9 1 6.1483 -0.9602 -1.4152 10 6 6.2630 -1.4720 -3.4943 11 7 5.6033 -1.4847 -4.6308 12 14 8.1028 -1.7954 -3.4787 13 1 8.6058 -1.7249 -2.0832 14 1 8.3728 -3.1454 -4.0352 15 1 8.7923 -0.7723 -4.3052 16 6 3.5018 -2.0930 -3.2524 17 6 3.0489 -1.2017 -4.3801 18 8 3.3038 -0.0209 -4.3564 19 8 2.3632 -1.7198 -5.4112 20 7 2.0196 -0.6925 1.1994 21 6 1.3467 -1.9987 1.3692 22 6 0.1818 -1.6566 2.3264 23 6 0.6981 -0.4367 3.0629 24 6 0.2842 0.1711 4.2297 25 6 0.9488 1.2875 4.7035 26 6 2.0301 1.7936 4.0053 27 6 2.4467 1.1911 2.8369 28 6 1.7798 0.0676 2.3509 29 1 -0.3633 0.4297 0.9335 30 1 -0.3634 0.5937 -0.8388 31 1 -0.3634 -1.0232 -0.0947 32 1 1.7360 -1.7674 -1.2142 33 1 1.6196 -0.2503 -2.1378 34 1 6.0717 -1.6624 -5.4615 35 1 4.1604 -2.8683 -3.6441 36 1 2.6333 -2.5565 -2.7844 37 1 2.0945 -1.1089 -6.1109 38 1 0.9683 -2.3656 0.4152 39 1 2.0205 -2.7246 1.8243 40 1 -0.0017 -2.4772 3.0198 41 1 -0.7226 -1.4159 1.7675 42 1 -0.5601 -0.2254 4.7741 43 1 0.6241 1.7633 5.6170 44 1 2.5504 2.6641 4.3767 45 1 3.2921 1.5910 2.2967 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592225536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:17 Heat of formation + Delta-G solvation = -83.531789 kcal Electronic energy + Delta-G solvation = -29732.272260 eV Core-core repulsion = 25714.933705 eV Total energy + Delta-G solvation = -4017.338555 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.157 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.13526 -41.06062 -39.83284 -38.11091 -36.88570 -36.22680 -34.41178 -33.62602 -32.40630 -29.84517 -29.62999 -29.41524 -28.97293 -26.35648 -23.99704 -23.41488 -22.73508 -22.05270 -21.41307 -20.03585 -18.93544 -18.61364 -18.22043 -17.90598 -17.31125 -16.82504 -16.42470 -16.40706 -16.27947 -16.14124 -15.83843 -15.35541 -14.97780 -14.42897 -14.33534 -14.12449 -13.84058 -13.66457 -13.50743 -13.43839 -13.31846 -13.16736 -13.12700 -12.87086 -12.83393 -12.70827 -12.38298 -12.20700 -12.14452 -12.03050 -11.88246 -11.75620 -11.61612 -11.39539 -10.93396 -10.32732 -10.20980 -9.71305 -9.66568 -8.65659 -8.37363 -5.93731 0.44555 0.50275 1.36075 1.40871 1.54679 1.80198 2.01606 2.29689 2.62185 2.73218 2.91303 3.03770 3.16972 3.64623 3.84897 3.88611 3.93899 4.09193 4.14421 4.20614 4.28226 4.35811 4.42224 4.53969 4.56924 4.60241 4.64086 4.74405 4.77482 4.80778 4.88857 4.95642 5.01651 5.07260 5.09347 5.23302 5.27859 5.47858 5.53031 5.62928 5.64774 5.95119 6.03252 6.11322 6.19592 6.45556 6.50284 7.20955 7.39920 7.55787 8.08227 8.69663 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016362 B = 0.003663 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.831305 B = 7643.120151 C = 8615.621505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.112 3.888 3 H 0.049 0.951 4 C -0.117 4.117 5 C 0.465 3.535 6 O -0.600 6.600 7 N -0.457 5.457 8 C -0.329 4.329 9 H 0.071 0.929 10 C -0.003 4.003 11 N -0.899 5.899 12 Si 0.989 3.011 13 H -0.276 1.276 14 H -0.261 1.261 15 H -0.287 1.287 16 C 0.149 3.851 17 C 0.498 3.502 18 O -0.550 6.550 19 O -0.521 6.521 20 N -0.501 5.501 21 C 0.039 3.961 22 C -0.100 4.100 23 C -0.149 4.149 24 C -0.092 4.092 25 C -0.137 4.137 26 C -0.110 4.110 27 C -0.143 4.143 28 C 0.083 3.917 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.270 0.730 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.412 0.588 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.148 0.852 43 H 0.153 0.847 44 H 0.138 0.862 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.516 -3.787 9.565 19.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.006 3.994 3 H 0.067 0.933 4 C -0.157 4.157 5 C 0.256 3.744 6 O -0.483 6.483 7 N -0.178 5.178 8 C -0.457 4.457 9 H 0.088 0.912 10 C -0.203 4.203 11 N -0.539 5.539 12 Si 0.813 3.187 13 H -0.201 1.201 14 H -0.185 1.185 15 H -0.213 1.213 16 C 0.024 3.976 17 C 0.340 3.660 18 O -0.438 6.438 19 O -0.333 6.333 20 N -0.217 5.217 21 C -0.087 4.087 22 C -0.137 4.137 23 C -0.152 4.152 24 C -0.111 4.111 25 C -0.155 4.155 26 C -0.129 4.129 27 C -0.163 4.163 28 C -0.014 4.014 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.129 0.871 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.129 0.871 36 H 0.138 0.862 37 H 0.271 0.729 38 H 0.121 0.879 39 H 0.096 0.904 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.166 0.834 43 H 0.171 0.829 44 H 0.156 0.844 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.402 -3.549 9.941 18.672 hybrid contribution 0.934 0.951 -1.038 1.690 sum -14.467 -2.598 8.903 17.185 Atomic orbital electron populations 1.22590 0.93618 1.04033 1.02851 1.21316 0.94028 0.96438 0.87663 0.93294 1.21739 0.91654 1.03462 0.98868 1.20884 0.90451 0.80187 0.82922 1.90504 1.71583 1.43736 1.42522 1.43548 1.05779 1.43356 1.25114 1.19531 0.81876 1.47976 0.96341 0.91154 1.25903 1.04056 0.96711 0.93667 1.69737 1.37919 1.48305 0.97925 0.84942 0.77583 0.78246 0.77880 1.20086 1.18526 1.21285 1.20687 0.97759 0.92500 0.86699 1.23822 0.71725 0.87632 0.82807 1.90596 1.53652 1.20431 1.79165 1.84445 1.68527 1.47107 1.33194 1.59972 1.56861 1.03745 1.01112 1.23313 0.94258 0.90237 1.00868 1.21853 0.98865 0.95097 0.97907 1.21342 0.95897 0.99849 0.98083 1.20737 1.00360 0.95559 0.94422 1.21362 0.96151 0.96946 1.01043 1.21135 0.97713 1.00100 0.93909 1.20687 1.00365 0.97118 0.98119 1.19730 0.94325 0.94442 0.92871 0.91945 0.91163 0.89345 0.87063 0.89285 0.91964 0.87117 0.86224 0.72927 0.87912 0.90448 0.88059 0.87956 0.83421 0.82918 0.84368 0.88998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 7.44 71.98 0.54 -3.44 16 2 C 0.11 3.73 1.82 44.92 0.08 3.82 16 3 H 0.05 2.01 7.82 -2.39 -0.02 1.99 16 4 C -0.12 -4.14 3.86 29.85 0.12 -4.03 16 5 C 0.47 23.05 7.26 87.65 0.64 23.69 16 6 O -0.60 -34.99 15.12 -3.07 -0.05 -35.03 16 7 N -0.46 -23.37 2.16 -639.62 -1.38 -24.75 16 8 C -0.33 -18.94 9.26 84.04 0.78 -18.16 16 9 H 0.07 4.40 7.43 -2.91 -0.02 4.38 16 10 C 0.00 -0.17 4.98 84.92 0.42 0.26 16 11 N -0.90 -47.74 8.87 21.66 0.19 -47.55 16 12 Si 0.99 43.74 29.58 68.60 2.03 45.77 16 13 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 14 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 15 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 16 C 0.15 6.26 4.98 85.64 0.43 6.69 16 17 C 0.50 21.32 5.97 71.24 0.43 21.75 16 18 O -0.55 -28.69 16.49 21.95 0.36 -28.32 16 19 O -0.52 -17.19 13.42 -51.35 -0.69 -17.88 16 20 N -0.50 -17.02 4.24 -664.84 -2.82 -19.84 16 21 C 0.04 0.98 6.26 86.66 0.54 1.52 16 22 C -0.10 -1.90 6.10 30.67 0.19 -1.71 16 23 C -0.15 -3.68 5.33 -19.49 -0.10 -3.79 16 24 C -0.09 -1.89 10.03 22.21 0.22 -1.67 16 25 C -0.14 -2.81 10.06 22.30 0.22 -2.58 16 26 C -0.11 -2.83 10.02 22.21 0.22 -2.61 16 27 C -0.14 -4.82 10.07 22.47 0.23 -4.60 16 28 C 0.08 2.70 5.05 38.28 0.19 2.89 16 29 H 0.06 1.44 6.06 -2.39 -0.01 1.43 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.09 1.55 5.77 -2.39 -0.01 1.54 16 32 H 0.11 3.12 5.55 -2.39 -0.01 3.11 16 33 H 0.09 3.08 7.83 -2.39 -0.02 3.06 16 34 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 35 H 0.11 4.89 6.68 -2.39 -0.02 4.87 16 36 H 0.12 3.77 6.51 -2.39 -0.02 3.76 16 37 H 0.41 10.22 9.10 -74.06 -0.67 9.54 16 38 H 0.10 2.09 5.34 -2.39 -0.01 2.08 16 39 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.10 1.58 5.99 -2.39 -0.01 1.57 16 42 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 43 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 44 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 45 H 0.09 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -80.62 358.74 3.15 -77.47 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: 0.37 Total: 32.12 kcal Atomic # 6 Polarization: 12.88 SS G_CDS: 5.14 Total: 18.02 kcal Atomic # 7 Polarization: -88.13 SS G_CDS: -4.01 Total: -92.14 kcal Atomic # 8 Polarization: -80.86 SS G_CDS: -0.37 Total: -81.24 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -80.62 3.15 -77.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592225536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.061 kcal (2) G-P(sol) polarization free energy of solvation -80.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds